zorino / kaamerLinks
kaamer - protein identification based on amino acid kmers
☆12Updated 2 years ago
Alternatives and similar repositories for kaamer
Users that are interested in kaamer are comparing it to the libraries listed below
Sorting:
- reference free variant assembly☆34Updated 2 years ago
- blast, shmlast☆21Updated 5 years ago
- Accurate and fast taxonomic classification using pseudoaligning☆21Updated 8 years ago
- Mapping NCBI Genbank accession to GTDB accession☆14Updated 4 years ago
- exploring viral genome assembly with variation graph tools☆20Updated 5 years ago
- k-mer similarity analysis pipeline☆23Updated 3 weeks ago
- Given a set of kmers (fasta format) and a set of sequences (fasta format), this tool will extract the sequences containing the kmers.☆21Updated 2 years ago
- Classify sequencing reads using MinHash.☆48Updated 5 years ago
- Nanopore read de-multiplexer☆13Updated 5 years ago
- A message queue for genomic surveillance☆19Updated 4 years ago
- ☆18Updated 8 years ago
- Indel-aware consensus for aligned BAM☆21Updated 3 months ago
- (Obsolete) NCBI Prokaryotic Genome Annotation Pipeline. New site:☆16Updated 7 years ago
- Python bindings to minimap2☆16Updated 8 years ago
- mreps: software for tandem repeat identification in DNA☆15Updated 6 years ago
- Accurate, resource-frugal and deterministic DNA sequence classifier.☆36Updated last week
- Malleable All-seeing Journal Of Research Artifacts☆35Updated 2 years ago
- Find Unique genomic Regions☆32Updated last month
- (a) (p)erfect (c)ircle? ... tests DNA sequences for overlapping ends, then trims and rejoins, and aligns reads to test the join☆11Updated 4 years ago
- Paint genomes with taxa-specific k-mer probabilities☆15Updated 3 years ago
- Parallel implementation of the LAST aligner☆18Updated 9 years ago
- http://www.combio.pl/alfree☆23Updated 3 years ago
- TreeGrafter is a new software tool for annotating uncharacterized protein sequences, using annotated phylogenetic trees.☆13Updated 4 months ago
- Utility program for extracting sequences from a fasta/fastq file☆35Updated 11 months ago
- Collection of utilities for working with PacBio-based assemblies☆13Updated 2 years ago
- Analysis pipeline for functional metagenomic sequencing data obtained using nanopore sequencing☆12Updated 9 years ago
- Simulate mutations in genomes☆15Updated 5 years ago
- A Go implementation of the strobemers (https://github.com/ksahlin/strobemers)☆14Updated 4 years ago
- Calculate genome wide average nucleotide identity (gwANI) for a multiFASTA alignment☆16Updated 7 years ago
- Accurate, Lightweight Clustering of de novo Transcriptomes using Fragment Equivalence Classes☆31Updated last year