zorino / kaamerLinks
kaamer - protein identification based on amino acid kmers
☆12Updated 2 years ago
Alternatives and similar repositories for kaamer
Users that are interested in kaamer are comparing it to the libraries listed below
Sorting:
- Mapping NCBI Genbank accession to GTDB accession☆14Updated 4 years ago
- ☆19Updated 8 years ago
- blast, shmlast☆22Updated 4 years ago
- Nanopore read de-multiplexer☆13Updated 5 years ago
- Paint genomes with taxa-specific k-mer probabilities☆15Updated 3 years ago
- Real-time species-typing visualisation for nanopore data.☆13Updated 2 years ago
- Accurate and fast taxonomic classification using pseudoaligning☆21Updated 7 years ago
- Given a set of kmers (fasta format) and a set of sequences (fasta format), this tool will extract the sequences containing the kmers.☆21Updated last year
- Simulate mutations in genomes☆15Updated 4 years ago
- Alternative taxonomic consensus algorithms based on the NCBI taxonomy tree☆16Updated last year
- Paint genomes with taxa-specific k-mer probabilities☆8Updated 7 years ago
- Robust individual and aggregate checksums for nucleotide sequences☆16Updated last year
- (a) (p)erfect (c)ircle? ... tests DNA sequences for overlapping ends, then trims and rejoins, and aligns reads to test the join☆11Updated 4 years ago
- Bioinformatics pipeline for nanopore sequencing data☆11Updated 6 years ago
- CAMITAX: Taxon labels for microbial genomes☆29Updated last year
- the Metagenomic test for Presence Or Absence of Pathways☆13Updated 6 years ago
- Next Index to Query Kmer Intersection☆16Updated 2 years ago
- Indel-aware consensus for aligned BAM☆21Updated 2 months ago
- ☆16Updated 7 years ago
- ☆14Updated 9 years ago
- ☆14Updated 2 years ago
- Hierarchical binned indexed data store for on-disk genomic data.☆14Updated 4 months ago
- mreps: software for tandem repeat identification in DNA☆14Updated 5 years ago
- k-mer similarity analysis pipeline☆21Updated last month
- exploring viral genome assembly with variation graph tools☆20Updated 5 years ago
- Index and query k-mer matrices in BGZF☆12Updated 7 years ago
- Assembly and scaffolding of bacterial genomes in real time using MinION-sequencing☆9Updated 7 years ago
- Calculate genome wide average nucleotide identity (gwANI) for a multiFASTA alignment☆16Updated 6 years ago
- Utility program for extracting sequences from a fasta/fastq file☆36Updated 5 months ago
- Analysis pipeline for functional metagenomic sequencing data obtained using nanopore sequencing☆12Updated 8 years ago