zorino / kaamerLinks
kaamer - protein identification based on amino acid kmers
☆12Updated 2 years ago
Alternatives and similar repositories for kaamer
Users that are interested in kaamer are comparing it to the libraries listed below
Sorting:
- Mapping NCBI Genbank accession to GTDB accession☆13Updated 4 years ago
- reference free variant assembly☆34Updated 2 years ago
- A message queue for genomic surveillance☆19Updated 3 years ago
- ☆18Updated 8 years ago
- Nanopore read de-multiplexer☆13Updated 5 years ago
- k-mer similarity analysis pipeline☆23Updated 2 months ago
- blast, shmlast☆21Updated 4 years ago
- Accurate and fast taxonomic classification using pseudoaligning☆21Updated 8 years ago
- exploring viral genome assembly with variation graph tools☆20Updated 5 years ago
- Malleable All-seeing Journal Of Research Artifacts☆35Updated 2 years ago
- Utility program for extracting sequences from a fasta/fastq file☆35Updated 8 months ago
- Given a set of kmers (fasta format) and a set of sequences (fasta format), this tool will extract the sequences containing the kmers.☆21Updated last year
- Simulate mutations in genomes☆15Updated 5 years ago
- Calculate genome wide average nucleotide identity (gwANI) for a multiFASTA alignment☆16Updated 6 years ago
- Dynamic programming for aa-to-nt alignment with affine gap, splicing and frameshift☆19Updated 11 months ago
- mreps: software for tandem repeat identification in DNA☆15Updated 5 years ago
- Accurate, resource-frugal and deterministic DNA sequence classifier.☆36Updated 2 weeks ago
- Paint genomes with taxa-specific k-mer probabilities☆15Updated 3 years ago
- Classify sequencing reads using MinHash.☆48Updated 5 years ago
- Real-time species-typing visualisation for nanopore data.☆13Updated 2 years ago
- (Obsolete) NCBI Prokaryotic Genome Annotation Pipeline. New site:☆16Updated 7 years ago
- CAMITAX: Taxon labels for microbial genomes☆30Updated last year
- Python bindings to minimap2☆16Updated 8 years ago
- Analysis pipeline for functional metagenomic sequencing data obtained using nanopore sequencing☆12Updated 8 years ago
- This is the codebase for Faucet, described in our manuscript: https://academic.oup.com/bioinformatics/article/34/1/147/4004871, by Roye R…☆18Updated 8 years ago
- SWORD - a highly efficient protein database search☆26Updated last year
- Collection of utilities for working with PacBio-based assemblies☆13Updated 2 years ago
- Bioinformatics pipeline for nanopore sequencing data☆11Updated 6 years ago
- Bioinformatics Open Source Sequence machine☆32Updated 2 years ago
- Accurate, Lightweight Clustering of de novo Transcriptomes using Fragment Equivalence Classes☆31Updated last year