kaamer - protein identification based on amino acid kmers
☆11Mar 7, 2023Updated 3 years ago
Alternatives and similar repositories for kaamer
Users that are interested in kaamer are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- A database for signatures of public genomic sources☆18Jul 18, 2026Updated last week
- A graph-inspired data structure for determining likely chains of sequences from breadcrumbs of evidence☆17Jun 29, 2021Updated 5 years ago
- Run Python functions locally or in the cloud. Built for computational science.☆22Oct 4, 2023Updated 2 years ago
- Streaming sequence classification with web services ✓📌☆19Dec 8, 2022Updated 3 years ago
- Shared k-mer content between two genomes☆18Jun 21, 2023Updated 3 years ago
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- Approximate nearest neighbour search for microbial genomes based on hash metric☆66Jun 10, 2026Updated last month
- ☆24Apr 2, 2021Updated 5 years ago
- (Obsolete) NCBI Prokaryotic Genome Annotation Pipeline. New site:☆16Sep 7, 2018Updated 7 years ago
- Differential k-mer analysis☆42Jan 29, 2024Updated 2 years ago
- a toolset for fast DNA read set matching and assembly using a new type of reduced kmer☆36Aug 4, 2021Updated 4 years ago
- file command's magic pattern file for bioinformatics☆21Nov 25, 2015Updated 10 years ago
- Iterate over minimizers of a DNA sequence☆33Jul 12, 2024Updated 2 years ago
- Go port of wyhash v3☆14Nov 1, 2022Updated 3 years ago
- exploring viral genome assembly with variation graph tools☆20May 18, 2020Updated 6 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Go implementation of ntHash☆20Sep 16, 2021Updated 4 years ago
- in silico plasmid extraction☆13Sep 18, 2017Updated 8 years ago
- Bioinformatics lecture slides 2014☆11Jun 26, 2016Updated 10 years ago
- kvector is a small utility for converting motifs to kmer vectors to compare motifs of different lengths☆10May 29, 2017Updated 9 years ago
- A message queue for genomic surveillance☆20Oct 14, 2021Updated 4 years ago
- a DNA assembly library☆23Aug 13, 2025Updated 11 months ago
- Accurate and fast taxonomic classification using pseudoaligning☆21Sep 16, 2017Updated 8 years ago
- Minhash Index Extended to Knead Kmer Intersection☆11Mar 18, 2020Updated 6 years ago
- ProphAsm – a rapid computation of simplitigs directly from k-mer sets☆25Feb 17, 2023Updated 3 years ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- Histosketching Using Little Kmers☆56May 25, 2023Updated 3 years ago
- Python CLI for alignment-free genomics.☆13May 25, 2026Updated 2 months ago
- Simple tool to verticalize text delimited files.☆37May 6, 2024Updated 2 years ago
- A small library for ranges/intervals, for use with genomic data.☆17Nov 27, 2012Updated 13 years ago
- Gotree: a set of command line tools and an API to manipulate phylogenetic trees.☆150Jul 15, 2026Updated last week
- Alignment against all pre-2019 bacteria on laptops within a few hours (former MOF-Search)☆41Apr 17, 2024Updated 2 years ago
- PipeTaxon exposes the ncbi taxonomy database as a REST API.☆22Feb 15, 2023Updated 3 years ago
- Assembly statistic visualisation☆96Dec 22, 2023Updated 2 years ago
- Standalone C library for assembling Illumina short reads in small regions☆72Dec 15, 2022Updated 3 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Suite of tools for use in genome assembly and consensus. Work in progress.☆31Mar 22, 2021Updated 5 years ago
- Abbreviate strings to short, unique identifiers☆24May 10, 2022Updated 4 years ago
- ☆10Dec 20, 2022Updated 3 years ago
- visualising sequence similarity with Circos☆41Jul 1, 2019Updated 7 years ago
- your friendly pangenome graph genotyper☆10Feb 6, 2023Updated 3 years ago
- A Brand New LSH: The fly’s olfactory circuits algorithm☆11May 2, 2018Updated 8 years ago
- A resistome profiler for Graphing Resistance Out Of meTagenomes☆65May 11, 2020Updated 6 years ago