ArcInstitute / xsraLinks
An efficient CLI to extract sequences from the SRA
☆113Updated 3 months ago
Alternatives and similar repositories for xsra
Users that are interested in xsra are comparing it to the libraries listed below
Sorting:
- Fast FASTQ sample demultiplexing in Rust.☆66Updated last week
- Flexible and efficient parsing, interpreting and editing of sequencing reads☆44Updated last week
- A Rust library and command line tool for working with genomic ranges and their data.☆100Updated last year
- long read RNA-seq quantification☆91Updated last week
- ☆82Updated last month
- an API for intersections of genomic data☆74Updated this week
- Grep for FASTQ files☆98Updated 6 months ago
- expressions on VCFs☆86Updated 6 months ago
- An R package for estimating poly(A)-tail lengths in Oxford Nanopore RNA and DNA reads.☆54Updated last year
- create a interactive coverage plot dashboard from bam files and add gb, vcf and bed tracks☆54Updated 2 months ago
- Pipeline to evaluate and validate the accuracy of variant calling methods in genomic research☆36Updated this week
- EM based transcript abundance from nanopore reads mapped to a transcriptome with minimap2☆64Updated last year
- LongcallR is a SNP caller for single molecule long-read RNA-seq data☆67Updated last month
- Merging paired-end reads and removing adapters☆46Updated last month
- This repository hosts a large collection of Nextflow snippets☆56Updated 9 months ago
- BigWig and BAM utilities☆98Updated last year
- Simple utility to concatenate .fastq(.gz) files whilst creating a summary of the sequences.☆48Updated last month
- Ultra-fast 5' and 3' demultiplexer☆28Updated last year
- A collection of scripts to assist in the retrieval of data from the ENA Browser☆88Updated 2 months ago
- A template repository for snakemake workflows.☆40Updated 11 months ago
- a lexicographically-based GTF/GFF sorter☆35Updated 6 months ago
- ✂️ Deep learning-based splice site predictor that improves spliced alignments☆56Updated 8 months ago
- Human reference genome analysis sets☆55Updated 2 years ago
- A catalogue of available long read sequencing data analysis tools☆80Updated last month
- gatk4 RNA variant calling pipeline☆54Updated last week
- Scoring GT/AG sites for improving spliced alignment☆46Updated last month
- A versatile toolkit for k-mers with taxonomic information☆80Updated 2 months ago
- Creating alignment plots from bam files☆65Updated last week
- ☆46Updated 2 weeks ago
- Snakemake workflow management system and CLI generation tool☆61Updated last week