An efficient CLI to extract sequences from the SRA
☆124Jun 12, 2026Updated last month
Alternatives and similar repositories for xsra
Users that are interested in xsra are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- k-mers and the like☆23Updated this week
- Compute bottom-s sketches and s-buckets sketches, using simd-minimizers crate.☆21May 31, 2026Updated last month
- Fast DNA search and [host] depletion using minimizers☆119Updated this week
- A high efficiency binary format for sequencing data☆103Updated this week
- Tearing through FASTA/Q sequences☆38Jul 9, 2026Updated 2 weeks ago
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- Split k-mer analysis – version 2☆105Jul 9, 2026Updated 2 weeks ago
- A minimap2 implementation with binseq inputs☆18Dec 11, 2025Updated 7 months ago
- Fast approximate string searching☆159Jul 13, 2026Updated last week
- syncmer graphs, and perhaps other sorts of sequence graphs☆42Jul 10, 2026Updated 2 weeks ago
- Fast and Memory Efficient Genome Sketching via HyperLogLog, HyperMinHash and UltraLogLog☆22Jan 22, 2026Updated 6 months ago
- Rust bindings to minimap2 library☆113May 3, 2026Updated 2 months ago
- A minimal copy fastq and fasta reader built for parallel support and paired end processing☆45Jul 16, 2026Updated last week
- A new high-resolution long-read metagenome assembler for even noisy reads☆157Jul 3, 2026Updated 3 weeks ago
- A small, auxiliary index to massively improve parallel fastq parsing☆32Mar 6, 2026Updated 4 months ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- A SIMD-accelerated library to compute random minimizers☆46Jul 7, 2026Updated 2 weeks ago
- An extensible and performant aligner and read mapper☆99Updated this week
- Fast interval intersection library☆45Jul 14, 2026Updated last week
- Efficient querying of biological databases☆44Oct 27, 2025Updated 8 months ago
- Strain-level haplotyping for metagenomes with short or long-reads.☆69Apr 10, 2025Updated last year
- Experiments with using BIGSI data structure for metagenomic and QC applications☆19Aug 12, 2024Updated last year
- process any file in tabular format. Fasta/fastq/GTF/GFF/VCF/SAM/BED☆24Aug 22, 2025Updated 11 months ago
- Run a command and report its process tree's CPU, memory, and I/O usage☆21Updated this week
- Optimal distance lower bound k-mer sampling.☆12Jun 19, 2024Updated 2 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- A k-mer search engine for all Sequence Read Archive public accessions☆44May 13, 2026Updated 2 months ago
- Iterate over minimizers of a DNA sequence☆33Jul 12, 2024Updated 2 years ago
- A command line utilty for working with BINSEQ files☆39Updated this week
- Robust individual and aggregate checksums for nucleotide sequences☆17Mar 3, 2026Updated 4 months ago
- Tool for exploring sequence alignment algorithms☆14Aug 30, 2024Updated last year
- sunburst plots for taxonomy - working to update Krona☆45Sep 22, 2025Updated 10 months ago
- kmer-counter based on kache-hash☆16Updated this week
- CLI tool for querying the Genome Taxonomy Database (GTDB). Batch search, genome cards, taxon lineages, and cross-release taxonomic compar…☆31Updated this week
- FMSI is a highly memory efficient exact k-mer set index based on masked superstrings and the masked Burrows-Wheeler transform☆25Nov 20, 2025Updated 8 months ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- ☆21Dec 26, 2025Updated 6 months ago
- Align proteins to genomes with splicing and frameshift☆410Jan 5, 2026Updated 6 months ago
- Command line scientific data management tool☆230Nov 4, 2024Updated last year
- Map query sequences to the assemblies of all pre-June 2023 bacteria (https://ftp.ebi.ac.uk/pub/databases/AllTheBacteria/Releases/0.2/) on…☆12May 22, 2024Updated 2 years ago
- Grep for FASTQ files☆104Jul 9, 2026Updated 2 weeks ago
- COBS - Compact Bit-Sliced Signature Index (for Genomic k-Mer Data or q-Grams)☆21Nov 24, 2024Updated last year
- LexicMap: efficient sequence alignment against millions of prokaryotic genomes☆221Jul 16, 2026Updated last week