ratschlab / tensor-sketch-alignment
Code for the paper Aligning Distant Sequences to Graphs using Long Seed Sketches.
☆13Updated 2 years ago
Alternatives and similar repositories for tensor-sketch-alignment:
Users that are interested in tensor-sketch-alignment are comparing it to the libraries listed below
- Iterate k-min-mers from a DNA sequence in Rust☆13Updated 9 months ago
- ProphAsm – a rapid computation of simplitigs directly from k-mer sets☆26Updated last year
- ☆25Updated 3 years ago
- Validation of sycnmers compared to minimizers☆11Updated 4 years ago
- ☆17Updated 4 years ago
- RabbitMash: an efficient highly optimized implementation of Mash.☆21Updated last year
- recompute GFA link overlaps☆25Updated 2 years ago
- A k-mer search engine for all Sequence Read Archive public accessions☆19Updated 2 months ago
- ☆14Updated 2 years ago
- This repo is deprecated. Please use gfatools instead.☆16Updated 6 years ago
- ☆17Updated last year
- Next Index to Query Kmer Intersection☆16Updated last year
- Alignment algorithm for short Illumina reads to a de Bruijn graph☆16Updated 5 years ago
- the we-flyin WFA-guided ultralong tiling sequence aligner☆11Updated 3 years ago
- ☆14Updated last year
- De Bruijn graph construction for large k.☆18Updated 3 years ago
- Utilities to detect and profile `het-kmers`☆11Updated 5 months ago
- Reference implementations of minimizer schemes to go with the mod-minimizers paper.☆22Updated this week
- A script to extract graph structure from multiple sequence alignment result and output as GFA/JSON for vg☆11Updated 5 years ago
- convert variation graph alignments to coverage maps over nodes☆22Updated last month
- Long read aligner for cyclic and acyclic pangenome graphs☆36Updated last year
- Contains the description of a file format to store kmers and associated values☆32Updated 2 years ago
- ☆15Updated 4 years ago
- Optimal distance lower bound k-mer sampling.☆12Updated 7 months ago
- Hidden Markov Model based Copy number caller☆20Updated 2 months ago
- Pangenome Graph Variation Format (PGVF)☆18Updated 4 years ago
- An Fast variant calling tool to detection germline and somatic variants☆10Updated last year
- ☆32Updated 2 years ago
- MEMO: MEM-based pangenome indexing for k-mer queries☆18Updated 7 months ago