sanger-pathogens / panito
Calculate genome wide average nucleotide identity (gwANI) for a multiFASTA alignment
☆16Updated 5 years ago
Related projects ⓘ
Alternatives and complementary repositories for panito
- software to identify primers that can distinguish genomes☆20Updated 3 weeks ago
- (a) (p)erfect (c)ircle? ... tests DNA sequences for overlapping ends, then trims and rejoins, and aligns reads to test the join☆11Updated 3 years ago
- De novo VIral Genome Annotator☆21Updated 2 months ago
- MetagenOmic read Re-Assigner and abundance quantifier☆18Updated 5 months ago
- Strain-level abundances estimation in metagenomic samples using variation graphs☆25Updated last year
- Indels are not ideal - quick test for interrupted ORFs in bacterial/microbial genomes☆15Updated 6 years ago
- Strain-level taxonomic classification of metagenomic data using pangenome graphs☆16Updated this week
- Code to create a PRG from a Multiple Sequence Alignment file☆22Updated 7 months ago
- Northern Arizona SNP Pipeline☆19Updated 3 weeks ago
- Map query sequences to the assemblies of all pre-June 2023 bacteria (https://ftp.ebi.ac.uk/pub/databases/AllTheBacteria/Releases/0.2/) on…☆12Updated 6 months ago
- Rapid discovery of reciprocal best blast pairs.☆10Updated 2 weeks ago
- Mycobacterium tuberculosis genomic analysis from Nanopore sequencing data☆11Updated 5 months ago
- Paint genomes with taxa-specific k-mer probabilities☆15Updated 2 years ago
- Genomic Assemblies Merger for NGS☆26Updated last year
- C++ tools for NCBI taxonomy tasks☆11Updated 2 years ago
- transposable element typing pipeline☆17Updated 8 months ago
- Annotate your metagenome assemblies☆11Updated 6 years ago
- tool to determine optimal refrerence genome given a set of fasta files☆14Updated last year
- Utility to analyse a group of closely related MAgs/Genomes/bins/SUBs of more or less dubious origin☆12Updated 2 months ago
- metagenome population recombination rate estimation pipeline☆12Updated 3 months ago
- Detect contigs of complete circular genomes☆21Updated 5 years ago
- Read contamination removal☆24Updated 10 months ago
- Finding prophage regions in bacterial genomes using brute force☆22Updated last year
- Lowest Common Ancestor from a SAM/BAM/CRAM alignment file☆9Updated 3 months ago
- ☆15Updated 4 months ago
- ☆15Updated 4 years ago
- Remove human reads from a sequencing run☆24Updated last month
- Visualize microbial evolution at the SNP level!☆13Updated last week
- Variant call verification☆15Updated last year