sanger-pathogens / panitoLinks
Calculate genome wide average nucleotide identity (gwANI) for a multiFASTA alignment
☆16Updated 7 years ago
Alternatives and similar repositories for panito
Users that are interested in panito are comparing it to the libraries listed below
Sorting:
- Read contamination removal☆25Updated last year
- (a) (p)erfect (c)ircle? ... tests DNA sequences for overlapping ends, then trims and rejoins, and aligns reads to test the join☆11Updated 4 years ago
- De novo VIral Genome Annotator☆23Updated last week
- Paint genomes with taxa-specific k-mer probabilities☆15Updated 3 years ago
- Strain-level abundances estimation in metagenomic samples using variation graphs☆24Updated 2 years ago
- Map query sequences to the assemblies of all pre-June 2023 bacteria (https://ftp.ebi.ac.uk/pub/databases/AllTheBacteria/Releases/0.2/) on…☆12Updated last year
- Indels are not ideal - quick test for interrupted ORFs in bacterial/microbial genomes☆15Updated 7 years ago
- tool to determine optimal refrerence genome given a set of fasta files☆15Updated 2 years ago
- Mycobacterium tuberculosis genomic analysis from Nanopore sequencing data☆12Updated last year
- Genomic Assemblies Merger for NGS☆26Updated 2 years ago
- Embedding-based indexing for compact storage and rapid querying of bacterial pan-genomes☆20Updated last month
- Indel-aware consensus for aligned BAM☆21Updated 5 months ago
- A set of scripts to help automate the construction of data sets for multi-gene phylogenetic analyses.☆13Updated 6 years ago
- metagenome population recombination rate estimation pipeline☆12Updated last month
- Location of structural errors in a genome assembly and structural variations between a pair of genomes☆11Updated 6 years ago
- Assembly based core genome SNP alignments for bacteria☆25Updated 6 years ago
- SARS-CoV-2: detecting recombinations in viruses using large data sets with high sequence similarity☆13Updated 2 years ago
- software to identify primers that can distinguish genomes☆20Updated 3 weeks ago
- Extracts subgraphs or components from a graph in GFA format☆24Updated last year
- VESPA: Very large-scale Evolutionary and Selective Pressure Analyses☆15Updated 3 years ago
- ☆11Updated last year
- transposable element typing pipeline☆19Updated last year
- C++ tools for NCBI taxonomy tasks☆11Updated 6 months ago
- Variant call verification☆16Updated 8 months ago
- Annotated Genome Optimization Using Transcriptome Information☆20Updated 5 years ago
- ☆20Updated 2 years ago
- A k-mer-based maximum likelihood method for estimating distances of reads to genomes and phylogenetic placement.☆18Updated last month
- Grabbing genome accessions & download info based on taxonomy, using the NCBI REST API, w00t☆12Updated 10 months ago
- Nanopore read de-multiplexer☆13Updated 5 years ago
- Scaffolding with assembly likelihood optimization☆21Updated 5 years ago