Genome size estimation from long read overlaps
☆98Sep 8, 2026Updated last month
Alternatives and similar repositories for lrge
Users that are interested in lrge are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆10Jun 9, 2025Updated last year
- A high-resolution long-read metagenome assembler for even noisy reads. Myloasm assembles strain-resolved, circular + complete genomes fro…☆174Oct 11, 2026Updated last week
- Split k-mer analysis – version 2☆108Oct 12, 2026Updated last week
- Remove human reads from a sequencing run☆53Jun 29, 2026Updated 3 months ago
- Bifrost graph gene caller.☆102Aug 31, 2026Updated last month
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- Plasmid analysis using rearrangement distances☆56Jul 19, 2026Updated 3 months ago
- Randomly subsample sequencing reads or alignments☆278Oct 5, 2026Updated 2 weeks ago
- A tool for generating consensus long-read assemblies for bacterial genomes☆243Oct 8, 2026Updated 2 weeks ago
- Fast DNA search and [host] depletion using minimizers☆128Oct 2, 2026Updated 3 weeks ago
- Fast long-read mapper and whole-genome aligner (accelerated version of minimap2)☆63Jul 5, 2026Updated 3 months ago
- Ultra-fast preprocessing and quality control for long-read sequencing data☆243Sep 11, 2026Updated last month
- De novo genome assembly for long reads using an overlap graph☆25Updated this week
- ☆10Apr 16, 2025Updated last year
- Identify long STRs, VNTRs, satellite DNA and other low-complexity regions in a genome☆101Jan 28, 2026Updated 8 months ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- BRICK creates a BRIG-like interactive data visualisation for bacterial genome annotations and comparisons☆22Sep 9, 2026Updated last month
- Compute a pairwise SNP distance matrix from one or two alignment(s)☆27Sep 12, 2024Updated 2 years ago
- A genome completeness evaluation tool based on miniprot☆270Oct 7, 2026Updated 2 weeks ago
- Pairwise whole genome aligner☆245Sep 4, 2026Updated last month
- A small, auxiliary index to massively improve parallel fastq parsing☆32Mar 6, 2026Updated 7 months ago
- An extensible and performant aligner and read mapper☆107Oct 14, 2026Updated last week
- ☆16Jul 24, 2026Updated 3 months ago
- ultrafast taxonomic profiling and genome querying for metagenomic samples by abundance-corrected minhash.☆332Oct 10, 2026Updated last week
- ☆38Updated this week
- Bare Metal GPUs on DigitalOcean Gradient AI • AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- Benchmark and toy datasets☆12Jan 8, 2025Updated last year
- a short-read polishing tool for long-read assemblies☆226Jul 28, 2026Updated 2 months ago
- Improved long-read assembly by preserving contained reads☆29Aug 22, 2024Updated 2 years ago
- De novo genome assembler for long uncorrected reads☆236Nov 15, 2023Updated 2 years ago
- Interpretative standards for AMR genotypes☆32Oct 8, 2026Updated 2 weeks ago
- LexicMap: efficient sequence alignment against millions of prokaryotic genomes☆226Updated this week
- How many distinct k-mers are there in a sequence?☆11Feb 4, 2026Updated 8 months ago
- Build phylogenomic datasets in seconds☆15Sep 23, 2026Updated last month
- A SIMD-accelerated library to compute random minimizers☆49Oct 2, 2026Updated 3 weeks ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Databases for wg/cgMLST analysis with the PN2.0 software☆10May 7, 2026Updated 5 months ago
- Fast average nucleotide identity (ANI) calculator for bacterial genomes, MAGs, and contigs. Supports genome comparisons and large-scale d…☆269Oct 14, 2026Updated last week
- Fast and Memory Efficient Genome Sketching via HyperLogLog, HyperMinHash, UltraLogLog and ExaLogLog☆23Updated this week
- Strain-level haplotyping for metagenomes with short or long-reads.☆71Apr 10, 2025Updated last year
- A rapid, accurate and flexible (core-genome) multi-locus sequence typing (MLST) allele caller.☆34Oct 14, 2026Updated last week
- A methodology to rapidly leverage whole genome sequencing of bacterial isolates for clinical identification.☆36Oct 6, 2026Updated 2 weeks ago
- Mumemto: multi-MUM and MEM finding across pangenomes☆139Sep 21, 2026Updated last month