Genome size estimation from long read overlaps
☆82Apr 13, 2026Updated last week
Alternatives and similar repositories for lrge
Users that are interested in lrge are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆10Jun 9, 2025Updated 10 months ago
- ☆30Updated this week
- Bifrost graph gene caller.☆98Apr 12, 2026Updated last week
- BRICK creates a BRIG-like interactive data visualisation for bacterial genome annotations and comparisons☆21Dec 9, 2025Updated 4 months ago
- ☆15Feb 10, 2025Updated last year
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Remove human reads from a sequencing run☆48Apr 13, 2026Updated last week
- Split k-mer analysis – version 2☆105Apr 9, 2026Updated last week
- Plasmid analysis using rearrangement distances☆52Apr 8, 2026Updated last week
- A tool for generating consensus long-read assemblies for bacterial genomes☆227Apr 14, 2026Updated last week
- Pairwise whole genome aligner☆235Mar 2, 2026Updated last month
- A Nextflow pipeline for viral genomics (Influenza/RSV) supporting Illumina and Nanopore sequencing of clinical and wastewater samples.☆10Feb 27, 2026Updated last month
- Finding regions of similarity between plasmids☆17Nov 2, 2022Updated 3 years ago
- A tool to detect acquired AMR genes directly from long read sequencing data.☆27Jan 31, 2026Updated 2 months ago
- Universal and efficient structure-based core gene phylogeny with Foldseek and ProstT5☆87Mar 12, 2026Updated last month
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Interpretative standards for AMR genotypes☆29Mar 24, 2026Updated 3 weeks ago
- Recombination-free trees☆63Sep 1, 2025Updated 7 months ago
- Snakemake workflow management system and CLI generation tool☆66Oct 22, 2025Updated 5 months ago
- Standalone Python re-implementation of the POLCA polisher from MaSuRCA☆44Aug 20, 2025Updated 8 months ago
- Fast sequence distance estimates☆28Updated this week
- Visualize microbial evolution at the SNP level!☆15Aug 12, 2025Updated 8 months ago
- Compute a pairwise SNP distance matrix from one or two alignment(s)☆26Sep 12, 2024Updated last year
- Improved long-read assembly by preserving contained reads☆30Aug 22, 2024Updated last year
- A new high-resolution long-read metagenome assembler for even noisy reads☆145Apr 5, 2026Updated 2 weeks ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- PyO3 bindings and Python interface to skani, a method for fast genomic identity calculation using sparse chaining.☆29Aug 20, 2025Updated 8 months ago
- A taxonomic classifier of plasmids☆28Jul 7, 2021Updated 4 years ago
- ultrafast taxonomic profiling and genome querying for metagenomic samples by abundance-corrected minhash.☆301Feb 3, 2026Updated 2 months ago
- Alignment against all pre-2019 bacteria on laptops within a few hours (former MOF-Search)☆41Apr 17, 2024Updated 2 years ago
- a tool to filter sites in a FASTA-format whole-genome pseudo-alignment☆65Jun 16, 2025Updated 10 months ago
- A hybrid assembly and MAG recovery pipeline (and more!)☆106Apr 14, 2026Updated last week
- Ultra-fast preprocessing and quality control for long-read sequencing data☆226Sep 6, 2025Updated 7 months ago
- Fast pairwise transmission inference from single genome and/or metagenomic data☆24Aug 1, 2025Updated 8 months ago
- De novo genome assembler for long uncorrected reads☆231Nov 15, 2023Updated 2 years ago
- End-to-end encrypted email - Proton Mail • AdSpecial offer: 40% Off Yearly / 80% Off First Month. All Proton services are open source and independently audited for security.
- LexicMap: efficient sequence alignment against millions of prokaryotic genomes☆217Updated this week
- Randomly subsample sequencing reads or alignments☆259Updated this week
- Reorients assembled microbial sequences☆136Aug 21, 2025Updated 7 months ago
- Genomic neighbor typing of bacterial pathogens using MinHash☆42Jan 10, 2023Updated 3 years ago
- TAXnomic Profile Aggregation and STAndardisation☆42Nov 18, 2025Updated 5 months ago
- app to collapse Pango lineages for reporting☆13Dec 9, 2025Updated 4 months ago
- Efficient and fast querying and parsing of GTDB's data☆29Aug 21, 2025Updated 7 months ago