Alternatives and similar repositories for seq_io:

Users that are interested in seq_io are comparing it to the libraries listed below

• lskatz / fasten
  Fasten toolkit, for streaming operations on fastq files
  ☆79Updated last month
• 10XGenomics / rust-debruijn
  De Bruijn graphs in Rust
  ☆67Updated 9 months ago
• aseyboldt / fastq-rs
  ☆51Updated 2 years ago
• mrvollger / rustybam
  bioinformatics toolkit in rust
  ☆88Updated 2 weeks ago
• luizirber / nthash
  ntHash implementation in Rust
  ☆36Updated 9 months ago
• noamteyssier / gia
  gia: Genomic Interval Arithmetic
  ☆62Updated 8 months ago
• zaeleus / squab
  Alignment-based gene expression quantification
  ☆27Updated last month
• jguhlin / minimap2-rs
  Rust bindings to minimap2 library
  ☆95Updated last week
• COMBINE-lab / kmers
  A bit-packed k-mer representation (and relevant utilities) for rust
  ☆48Updated 10 months ago
• suchapalaver / krust
  Bioinformatics 101 tool for counting unique k-length substrings in DNA
  ☆30Updated last year
• quinlan-lab / bedder-rs
  an API for intersections of genomic data
  ☆75Updated this week
• COMBINE-lab / terminus
  ☆58Updated 2 years ago
• google / best
  Bam Error Stats Tool (best): analysis of error types in aligned reads.
  ☆132Updated 2 months ago
• onecodex / needletail
  Fast FASTX parsing and k-mer methods in Rust
  ☆186Updated 2 weeks ago
• bsaintjo / slow5-rs
  Low level bindings and wrapper for slow5lib, an alternative for ONT Nanopore sequencing FAST5 output
  ☆10Updated 6 months ago
• stjude-rust-labs / fq
  Command line utility for manipulating Illumina-generated FASTQ files.
  ☆85Updated 2 months ago
• ocxtal / udon
  BAM CIGAR / MD transcoder for compact on-memory representation and quick drawing
  ☆20Updated last year
• ArcInstitute / binseq
  A high efficiency binary format for sequencing data
  ☆45Updated last week
• algbio / ggcat
  Compacted and colored de Bruijn graph construction and querying
  ☆82Updated this week
• ostnam / rust-wfa
  ☆11Updated 2 years ago
• 10XGenomics / rust-pseudoaligner
  Single-Cell RNA-seq pseudo-aligner
  ☆51Updated last year
• TianyiShi2001 / bioinformatics-algorithms-rs
  Bioinformatics Algorithms implemented in Rust for Learners
  ☆31Updated 3 years ago
• varlociraptor / varlociraptor
  Flexible, uncertainty-aware variant calling with parameter free filtration via FDR control.
  ☆124Updated this week
• althonos / lightmotif
  A lightweight platform-accelerated library for biological motif scanning using position weight matrices.
  ☆46Updated last week
• jackh726 / bigtools
  A high-performance BigWig and BigBed library in Rust
  ☆84Updated last month
• stjude-rust-labs / ngs
  Command line utility for working with next-generation sequencing files.
  ☆35Updated 3 weeks ago
• jeff-k / bio-seq
  Bit-packed and well-typed biological sequences
  ☆33Updated last week
• wdecoster / kyber
  ☆21Updated 4 months ago
• rchikhi / rust-alignbench
  Pairwise nucleotide alignment benchmark of Rust bindings
  ☆31Updated last year
• 10XGenomics / rust-toolbox
  Rust utility code
  ☆33Updated last year