Alternatives and similar repositories for seq_io

Users that are interested in seq_io are comparing it to the libraries listed below

• aseyboldt / fastq-rs
  ☆50Updated 3 years ago
• 10XGenomics / rust-debruijn
  De Bruijn graphs in Rust
  ☆70Updated last year
• jguhlin / minimap2-rs
  Rust bindings to minimap2 library
  ☆101Updated last week
• lskatz / fasten
  Fasten toolkit, for streaming operations on fastq files
  ☆80Updated this week
• noamteyssier / gia
  gia: Genomic Interval Arithmetic
  ☆64Updated last year
• mrvollger / rustybam
  bioinformatics toolkit in rust
  ☆92Updated last month
• zaeleus / squab
  Alignment-based gene expression quantification
  ☆28Updated 2 months ago
• algbio / ggcat
  Compacted and colored de Bruijn graph construction and querying
  ☆84Updated this week
• COMBINE-lab / kmers
  A bit-packed k-mer representation (and relevant utilities) for rust
  ☆47Updated last year
• suchapalaver / krust
  Bioinformatics 101 tool for counting unique k-length substrings in DNA
  ☆31Updated 2 years ago
• ostnam / rust-wfa
  ☆12Updated 3 years ago
• onecodex / needletail
  Fast FASTX parsing and k-mer methods in Rust
  ☆198Updated 3 months ago
• jeff-k / bio-seq
  Bit-packed and well-typed biological sequences
  ☆37Updated 3 weeks ago
• luizirber / nthash
  ntHash implementation in Rust
  ☆36Updated last year
• bsaintjo / slow5-rs
  Low level bindings and wrapper for slow5lib, an alternative for ONT Nanopore sequencing FAST5 output
  ☆10Updated 11 months ago
• google / best
  Bam Error Stats Tool (best): analysis of error types in aligned reads.
  ☆137Updated 8 months ago
• quinlan-lab / bedder-rs
  an API for intersections of genomic data
  ☆74Updated last week
• stjude-rust-labs / ngs
  Command line utility for working with next-generation sequencing files.
  ☆36Updated 4 months ago
• 10XGenomics / rust-pseudoaligner
  Single-Cell RNA-seq pseudo-aligner
  ☆51Updated last year
• ocxtal / udon
  BAM CIGAR / MD transcoder for compact on-memory representation and quick drawing
  ☆20Updated 2 years ago
• noamteyssier / bedrs
  bedtools-like functionality for interval sets in rust
  ☆54Updated 2 months ago
• RagnarGrootKoerkamp / astar-pairwise-aligner
  A pairwise sequence aligner written in Rust
  ☆137Updated 3 months ago
• jguhlin / sfasta
  sfasta
  ☆35Updated 5 months ago
• 38 / d4-format
  The D4 Quantitative Data Format
  ☆167Updated 6 months ago
• fulcrumgenomics / fqgrep
  Grep for FASTQ files
  ☆98Updated 6 months ago
• fastqc-rs / fastqc-rs
  A quality control tool for FASTQ files written in rust
  ☆52Updated 4 months ago
• rchikhi / rust-alignbench
  Pairwise nucleotide alignment benchmark of Rust bindings
  ☆30Updated 2 years ago
• vsbuffalo / granges
  A Rust library and command line tool for working with genomic ranges and their data.
  ☆100Updated last year
• stjude-rust-labs / fq
  Command line utility for manipulating Illumina-generated FASTQ files.
  ☆91Updated 3 weeks ago
• rust-seq / minimizer-iter
  Iterate over minimizers of a DNA sequence
  ☆31Updated last year