FASTA and FASTQ parsing in Rust
☆85Mar 14, 2025Updated last year
Alternatives and similar repositories for seq_io
Users that are interested in seq_io are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆52Sep 20, 2022Updated 3 years ago
- Fast FASTX parsing and k-mer methods in Rust☆212Jun 22, 2026Updated last week
- Rust bindings to minimap2 library☆113May 3, 2026Updated last month
- Fast and flexible tool for reading, modifying and writing biological sequences☆19Feb 4, 2026Updated 4 months ago
- SIMD-accelerated library for computing global and X-drop affine gap penalty sequence-to-sequence or sequence-to-profile alignments using …☆140Jun 23, 2024Updated 2 years ago
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- Benchmarking pairwise aligners☆37Feb 8, 2025Updated last year
- Bioinformatics 101 tool for counting unique k-length substrings in DNA☆33Feb 17, 2026Updated 4 months ago
- Rust in bioinformatics and computational biology☆19Oct 22, 2022Updated 3 years ago
- Bitpacked sequence trait and implementation☆18Feb 27, 2026Updated 4 months ago
- Fasten toolkit, for streaming operations on fastq files☆82Oct 24, 2025Updated 8 months ago
- A minimal copy fastq and fasta reader built for parallel support and paired end processing☆43May 21, 2026Updated last month
- Iterate over minimizers of a DNA sequence☆33Jul 12, 2024Updated last year
- Shared k-mer content between two genomes☆18Jun 21, 2023Updated 3 years ago
- A (very) fast program for getting statistics about a fastq file, the way I need them, written in Rust☆33Mar 20, 2026Updated 3 months ago
- Bare Metal GPUs on DigitalOcean Gradient AI • AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- Bioinformatics I/O libraries in Rust☆711Updated this week
- A long read simulator based on badread idea☆23Oct 7, 2022Updated 3 years ago
- A FASTA/FASTQ format parser library☆20Mar 1, 2024Updated 2 years ago
- This library provides HTSlib bindings and a high level Rust API for reading and writing BAM files.☆366Jan 29, 2026Updated 5 months ago
- ntHash implementation in Rust☆36Jul 12, 2024Updated last year
- Simple and transparent support for compressed files.☆81Updated this week
- minimizer-space de Bruijn graphs (mdBG) for whole genome assembly☆183Sep 19, 2024Updated last year
- nimble aligner that will map your reads to the references on a laptop☆11Jun 29, 2017Updated 9 years ago
- Reference implementations of minimizer schemes to go with the mod-minimizers paper.☆29Updated this week
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- A genomic minhashing implementation in Rust☆103Updated this week
- Grep for FASTQ files☆104Apr 30, 2026Updated last month
- String algorithm visualizations☆14Feb 7, 2023Updated 3 years ago
- De Bruijn graphs in Rust☆70Jul 22, 2024Updated last year
- Compute bottom-s sketches and s-buckets sketches, using simd-minimizers crate.☆21May 31, 2026Updated 3 weeks ago
- Optimal distance lower bound k-mer sampling.☆12Jun 19, 2024Updated 2 years ago
- Fast and compact locality-preserving minimal perfect hashing for k-mer sets.☆44Nov 18, 2023Updated 2 years ago
- Fast approximate string searching☆153Jun 20, 2026Updated last week
- fork of dorado that supports S/BLOW5☆13May 29, 2026Updated last month
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Genome size estimation from long read overlaps☆92Jun 22, 2026Updated last week
- An optimal space run-length Burrows-Wheeler transform full-text index☆27Oct 28, 2021Updated 4 years ago
- Nail is an Alignment Inference tooL☆62May 14, 2026Updated last month
- Cute tricks for SIMD vectorized binary encoding and decoding of nucleotides, in Rust.☆129Dec 30, 2020Updated 5 years ago
- A Rust library providing fully dynamic sets of k-mers with high locality☆47May 13, 2026Updated last month
- This library provides implementations of many algorithms and data structures that are useful for bioinformatics. All provided implementat…☆1,807Jun 22, 2026Updated last week
- ProphAsm – a rapid computation of simplitigs directly from k-mer sets☆25Feb 17, 2023Updated 3 years ago