FASTA and FASTQ parsing in Rust
☆85Mar 14, 2025Updated last year
Alternatives and similar repositories for seq_io
Users that are interested in seq_io are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆53Sep 20, 2022Updated 3 years ago
- Fast FASTX parsing and k-mer methods in Rust☆214Jun 22, 2026Updated 2 months ago
- Rust bindings to minimap2 library☆113May 3, 2026Updated 3 months ago
- Fast and flexible tool for reading, modifying and writing biological sequences☆20Feb 4, 2026Updated 6 months ago
- Bitpacked sequence trait and implementation☆19Aug 19, 2026Updated last week
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- SIMD-accelerated library for computing global and X-drop affine gap penalty sequence-to-sequence or sequence-to-profile alignments using …☆142Jun 23, 2024Updated 2 years ago
- Benchmarking pairwise aligners☆37Updated this week
- Bioinformatics 101 tool for counting unique k-length substrings in DNA☆34Feb 17, 2026Updated 6 months ago
- Rust in bioinformatics and computational biology☆19Oct 22, 2022Updated 3 years ago
- A (very) fast program for getting statistics about a fastq file, the way I need them, written in Rust☆33Jul 27, 2026Updated last month
- kmer-counter based on kache-hash☆16Updated this week
- Fasten toolkit, for streaming operations on fastq files☆82Oct 24, 2025Updated 10 months ago
- Shared k-mer content between two genomes☆18Jun 21, 2023Updated 3 years ago
- Iterate over minimizers of a DNA sequence☆33Jul 12, 2024Updated 2 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- A minimap2 implementation with binseq inputs☆17Dec 11, 2025Updated 8 months ago
- Bioinformatics I/O libraries in Rust☆718Aug 21, 2026Updated last week
- A long read simulator based on badread idea☆23Oct 7, 2022Updated 3 years ago
- This library provides HTSlib bindings and a high level Rust API for reading and writing BAM files.☆371Aug 17, 2026Updated last week
- A FASTA/FASTQ format parser library☆20Mar 1, 2024Updated 2 years ago
- Bit-packed and well-typed biological sequences☆46Jul 26, 2026Updated last month
- ntHash implementation in Rust☆36Jul 12, 2024Updated 2 years ago
- Tearing through FASTA/Q sequences☆38Jul 9, 2026Updated last month
- Simple and transparent support for compressed files.☆81Aug 19, 2026Updated last week
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Fast approximate string searching☆164Aug 11, 2026Updated 2 weeks ago
- ☆27Jun 16, 2026Updated 2 months ago
- nimble aligner that will map your reads to the references on a laptop☆11Jun 29, 2017Updated 9 years ago
- minimizer-space de Bruijn graphs (mdBG) for whole genome assembly☆184Sep 19, 2024Updated last year
- Grep for FASTQ files☆104Jul 9, 2026Updated last month
- String algorithm visualizations☆14Feb 7, 2023Updated 3 years ago
- A genomic minhashing implementation in Rust☆101Jul 8, 2026Updated last month
- Reference implementations of minimizer schemes to go with the mod-minimizers paper.☆29Jul 12, 2026Updated last month
- De Bruijn graphs in Rust☆72Jul 22, 2024Updated 2 years ago
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- Compute bottom-s sketches and s-buckets sketches, using simd-minimizers crate.☆21Updated this week
- An extensible and performant aligner and read mapper☆103Jul 27, 2026Updated last month
- Optimal distance lower bound k-mer sampling.☆12Jun 19, 2024Updated 2 years ago
- Fast and compact locality-preserving minimal perfect hashing for k-mer sets.☆44Nov 18, 2023Updated 2 years ago
- A Rust implementation of SSHash☆19Aug 9, 2026Updated 3 weeks ago
- Genome size estimation from long read overlaps☆91Updated this week
- fork of dorado that supports S/BLOW5☆13May 29, 2026Updated 3 months ago