markschl / seq_ioLinks
FASTA and FASTQ parsing in Rust
☆82Updated 10 months ago
Alternatives and similar repositories for seq_io
Users that are interested in seq_io are comparing it to the libraries listed below
Sorting:
- ☆51Updated 3 years ago
- De Bruijn graphs in Rust☆72Updated last year
- Alignment-based gene expression quantification☆35Updated 5 months ago
- bioinformatics toolkit in rust☆93Updated 4 months ago
- Rust bindings to minimap2 library☆108Updated this week
- Fasten toolkit, for streaming operations on fastq files☆81Updated 3 months ago
- Bit-packed and well-typed biological sequences☆45Updated 2 weeks ago
- Bam Error Stats Tool (best): analysis of error types in aligned reads.☆139Updated 11 months ago
- A bit-packed k-mer representation (and relevant utilities) for rust☆47Updated last year
- gia: Genomic Interval Arithmetic☆66Updated last year
- Fast FASTX parsing and k-mer methods in Rust☆208Updated last week
- Low level bindings and wrapper for slow5lib, an alternative for ONT Nanopore sequencing FAST5 output☆10Updated last year
- Compacted and colored de Bruijn graph construction and querying☆92Updated 2 months ago
- BAM CIGAR / MD transcoder for compact on-memory representation and quick drawing☆20Updated 2 years ago
- A quality control tool for FASTQ files written in rust☆52Updated 7 months ago
- Single-Cell RNA-seq pseudo-aligner☆52Updated last year
- The D4 Quantitative Data Format☆169Updated 2 months ago
- Bioinformatics 101 tool for counting unique k-length substrings in DNA☆33Updated last week
- ☆57Updated 3 years ago
- ☆12Updated 3 years ago
- Command line utility for working with next-generation sequencing files.☆37Updated 7 months ago
- Bioinformatics Algorithms implemented in Rust for Learners☆31Updated 4 years ago
- ntHash implementation in Rust☆36Updated last year
- sfasta☆35Updated 9 months ago
- an API for intersections of genomic data☆142Updated last week
- bedtools-like functionality for interval sets in rust☆55Updated 6 months ago
- Rust UMI Directional Adjacency Deduplicator☆15Updated 6 years ago
- A FASTA/FASTQ format parser library☆20Updated last year
- Rust implmentation of VCF parser☆26Updated 3 years ago
- A high-performance BigWig and BigBed library in Rust☆113Updated 3 months ago