FASTA and FASTQ parsing in Rust
☆84Mar 14, 2025Updated last year
Alternatives and similar repositories for seq_io
Users that are interested in seq_io are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆53Sep 20, 2022Updated 4 years ago
- Fast FASTX parsing and k-mer methods in Rust☆214Oct 6, 2026Updated 3 weeks ago
- Fast and flexible tool for reading, modifying and writing biological sequences☆18Feb 4, 2026Updated 8 months ago
- Rust bindings to minimap2 library☆114Sep 14, 2026Updated last month
- Bitpacked sequence trait and implementation☆19Updated this week
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Fasten toolkit, for streaming operations on fastq files☆84Oct 12, 2026Updated 2 weeks ago
- Bioinformatics I/O libraries in Rust☆729Oct 15, 2026Updated 2 weeks ago
- SIMD-accelerated library for computing global and X-drop affine gap penalty sequence-to-sequence or sequence-to-profile alignments using …☆141Jun 23, 2024Updated 2 years ago
- Tearing through FASTA/Q sequences☆42Updated this week
- A long read simulator based on badread idea☆23Oct 7, 2022Updated 4 years ago
- Benchmarking pairwise aligners☆37Aug 26, 2026Updated 2 months ago
- kmer-counter☆19Updated this week
- A minimap2 implementation with binseq inputs☆18Dec 11, 2025Updated 10 months ago
- A (very) fast program for getting statistics about a fastq file, the way I need them, written in Rust☆34Jul 27, 2026Updated 3 months ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- This library provides HTSlib bindings and a high level Rust API for reading and writing BAM files.☆375Aug 17, 2026Updated 2 months ago
- De Bruijn graphs in Rust☆72Jul 22, 2024Updated 2 years ago
- A high efficiency binary format for sequencing data☆110Aug 26, 2026Updated 2 months ago
- Shared k-mer content between two genomes☆19Jun 21, 2023Updated 3 years ago
- Bit-packed and well-typed biological sequences☆46Sep 22, 2026Updated last month
- Bioinformatics 101 tool for counting unique k-length substrings in DNA☆33Feb 17, 2026Updated 8 months ago
- Simple and transparent support for compressed files.☆81Sep 23, 2026Updated last month
- Optimal distance lower bound k-mer sampling.☆12Jun 19, 2024Updated 2 years ago
- ☆28Jun 16, 2026Updated 4 months ago
- Serverless GPU API endpoints on Runpod - Get Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- Fast approximate string searching☆170Updated this week
- Iterate over minimizers of a DNA sequence☆34Jul 12, 2024Updated 2 years ago
- ntHash implementation in Rust☆36Jul 12, 2024Updated 2 years ago
- Implementation of the u-index☆12Jul 19, 2025Updated last year
- BAM/SAM/CRAM/FASTA reader, pileup engine, BCF/BAM writing☆30Oct 22, 2026Updated last week
- A FASTA/FASTQ format parser library☆20Mar 1, 2024Updated 2 years ago
- An extensible and performant aligner and read mapper☆107Oct 14, 2026Updated 2 weeks ago
- Grep for FASTQ files☆103Sep 26, 2026Updated last month
- Compute hash digests for DNA sequences in a FASTA file☆12May 31, 2026Updated 4 months ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- A library for efficient nucleotide sequence manipulation using 2-bit encoding☆12Sep 28, 2026Updated last month
- How many distinct k-mers are there in a sequence?☆11Feb 4, 2026Updated 8 months ago
- nimble aligner that will map your reads to the references on a laptop☆11Jun 29, 2017Updated 9 years ago
- Nail is an Alignment Inference tooL☆71Oct 18, 2026Updated last week
- Fast and Memory Efficient Genome Sketching via HyperLogLog, HyperMinHash, UltraLogLog and ExaLogLog☆23Updated this week
- A pure rust reimplementation of rapid-gzip by Maximilian Knespel and Holger Brunst☆23Aug 10, 2026Updated 2 months ago
- A utility for splitting mixed origin NGS reads☆10Jun 1, 2021Updated 5 years ago