markschl / seq_io

Related projects ⓘ

Alternatives and complementary repositories for seq_io

• 10XGenomics / rust-debruijn
  De Bruijn graphs in Rust
  ☆63Updated 4 months ago
• zaeleus / squab
  Alignment-based gene expression quantification
  ☆26Updated 5 months ago
• lskatz / fasten
  Fasten toolkit, for streaming operations on fastq files
  ☆76Updated 8 months ago
• aseyboldt / fastq-rs
  ☆47Updated 2 years ago
• jguhlin / minimap2-rs
  Rust bindings to minimap2 library
  ☆66Updated 3 months ago
• COMBINE-lab / terminus
  ☆57Updated 2 years ago
• mrvollger / rustybam
  bioinformatics toolkit in rust
  ☆78Updated 6 months ago
• luizirber / nthash
  ntHash implementation in Rust
  ☆34Updated 4 months ago
• jakobnissen / alen
  Simple terminal alignment viewer
  ☆78Updated 2 months ago
• stjude-rust-labs / fq
  Command line utility for manipulating Illumina-generated FASTQ files.
  ☆77Updated this week
• suchapalaver / krust
  Bioinformatics 101 tool for counting unique k-length substrings in DNA
  ☆30Updated last year
• ostnam / rust-wfa
  ☆11Updated 2 years ago
• 38 / d4-format
  The D4 Quantitative Data Format
  ☆158Updated last month
• ocxtal / udon
  BAM CIGAR / MD transcoder for compact on-memory representation and quick drawing
  ☆20Updated last year
• bsaintjo / slow5-rs
  Low level bindings and wrapper for slow5lib, an alternative for ONT Nanopore sequencing FAST5 output
  ☆10Updated 2 weeks ago
• TianyiShi2001 / bioinformatics-algorithms-rs
  Bioinformatics Algorithms implemented in Rust for Learners
  ☆30Updated 3 years ago
• onecodex / needletail
  Fast FASTX parsing and k-mer methods in Rust
  ☆174Updated 2 weeks ago
• 10XGenomics / rust-pseudoaligner
  Single-Cell RNA-seq pseudo-aligner
  ☆50Updated 6 months ago
• fulcrumgenomics / fqgrep
  Grep for FASTQ files
  ☆93Updated last month
• google / best
  Bam Error Stats Tool (best): analysis of error types in aligned reads.
  ☆126Updated 8 months ago
• COMBINE-lab / kmers
  A bit-packed k-mer representation (and relevant utilities) for rust
  ☆47Updated 4 months ago
• markschl / seqtool
  Fast and flexible tool for reading, modifying and writing biological sequences
  ☆17Updated 2 months ago
• noamteyssier / gia
  gia: Genomic Interval Arithmetic
  ☆51Updated 3 months ago
• algbio / ggcat
  Compacted and colored de Bruijn graph construction and querying
  ☆76Updated this week
• jackh726 / bigtools
  A high-performance BigWig and BigBed library in Rust
  ☆71Updated last week
• wdecoster / kyber
  ☆18Updated this week
• varlociraptor / varlociraptor
  Flexible, uncertainty-aware variant calling with parameter free filtration via FDR control.
  ☆122Updated this week
• onecodex / finch-rs
  A genomic minhashing implementation in Rust
  ☆93Updated 10 months ago
• natir / yacrd
  Yet Another Chimeric Read Detector
  ☆72Updated 2 weeks ago
• 10XGenomics / fastq_set
  Tools for working FASTQ files from sequencers (R1/R2/I1/I2)
  ☆14Updated last month