A crate for working with genomics chain files.
☆15Jul 20, 2026Updated 3 weeks ago
Alternatives and similar repositories for chainfile
Users that are interested in chainfile are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Transcript versions for HGVS libraries☆37Jul 2, 2026Updated last month
- FUSE filesystem for the DNAnexus storage system☆13Apr 24, 2026Updated 3 months ago
- Lightweight, portable variation registration and retrieval☆17Updated this week
- Command line utility for working with next-generation sequencing files.☆39Jun 24, 2025Updated last year
- Rust crates for working with Workflow Description Language (WDL) documents.☆62Sep 23, 2025Updated 10 months ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- A performant Kubernetes-based task executor for the Task Execution Service (TES) 1.1 specification.☆19Jul 23, 2026Updated 3 weeks ago
- An information model for representing variant annotations.☆27Updated this week
- Create WDL documentation using Markdown.☆29Nov 25, 2025Updated 8 months ago
- Command line utility for manipulating FASTQ files☆100Updated this week
- Universal Transcript Archive: comprehensive genome-transcript alignments; multiple transcript sources, versions, and alignment methods; a…☆72Jun 27, 2026Updated last month
- Faultless AST for Open Biomedical Ontologies.☆28Oct 25, 2025Updated 9 months ago
- GA4GH Quality Control of Whole Genome Sequencing's metrics definition, benchmark resources and reference implementations☆26Jul 28, 2026Updated 2 weeks ago
- Forensic analysis tool useful in backwards computing information from next-generation sequencing data.☆11Jul 27, 2026Updated 2 weeks ago
- non-redundant, compressed, journalled, file-based storage for biological sequences☆52Nov 10, 2025Updated 9 months ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Bioinformatics workflows developed for and used on the St. Jude Cloud project.☆44Aug 6, 2026Updated last week
- A Snakemake workflow for calling small and structural variants under any kind of scenario (tumor/normal, tumor/normal/relapse, germline, …☆90Updated this week
- Extensible specification for representing and uniquely identifying biological sequence variation☆96Updated this week
- VEP-like tool for sequence ontology and HGVS annotation of VCF files☆32Updated this week
- Wrapper for multiple AI coders (goose, claude code, codex)☆21Dec 15, 2025Updated 7 months ago
- Identification of structural variations☆12Jul 22, 2022Updated 4 years ago
- A Rust-based, headless workflow execution framework supporting local, cloud, and HPC.☆56Updated this week
- drunk on perbase pileups and lua expressions☆19Nov 15, 2025Updated 8 months ago
- Open Source implementation of the GA4GH htsget protocol for objects stored in Google Cloud Storage☆25Nov 19, 2019Updated 6 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- A simple toolkit for manipulating nanopore signal data☆20Mar 14, 2026Updated 5 months ago
- dEploid is designed for deconvoluting mixed genomes with unknown proportions. Traditional ‘phasing’ programs are limited to diploid organ…☆22Jan 20, 2025Updated last year
- A Suite of Packages for Analysis of Big Genomic Data☆34Jan 20, 2025Updated last year
- CGM 主站☆11Jun 8, 2026Updated 2 months ago
- Simple matching of HTS samples based on HLA typing☆14Jan 4, 2017Updated 9 years ago
- A Boolean Algebra for Genetic Variants☆14Jul 6, 2026Updated last month
- Services and guidelines for normalizing variants☆15Jul 24, 2026Updated 3 weeks ago
- Useful functions for manipulating Multiplex Assay of Variant Effect datasets.☆11Feb 6, 2025Updated last year
- ☆24May 16, 2023Updated 3 years ago
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- ☆58Aug 11, 2022Updated 4 years ago
- haplotypes genotypes and alleles example decision synthesizer☆20Jun 13, 2019Updated 7 years ago
- Python toolkit for SSSOM mapping format☆63Aug 3, 2026Updated last week
- A port of biocommons/hgvs to the Rust programming language☆18Updated this week
- Lossless VCF compression☆22Mar 4, 2022Updated 4 years ago
- quick qc on long-read alignment files. Show read-length and depth distributions☆23Apr 24, 2026Updated 3 months ago
- Per-base per-nucleotide depth analysis☆151May 9, 2026Updated 3 months ago