stjude-rust-labs / chainfile
A crate for working with genomics chain files.
☆10Updated last month
Alternatives and similar repositories for chainfile:
Users that are interested in chainfile are comparing it to the libraries listed below
- overlapping bases in read-pairs from a fragment indicate accuracy and reveal error-prone sites☆31Updated last week
- drunk on perbase pileups and lua expressions☆17Updated last year
- A (very) fast program for getting statistics about a fastq file, the way I need them, written in Rust☆30Updated last month
- VEP-like tool for sequence ontology and HGVS annotation of VCF files☆17Updated this week
- Samwell: a python package for using genomic files... well☆20Updated 2 years ago
- Fast interval intersection library☆35Updated 3 weeks ago
- Fast sequencing data quality metrics☆23Updated last week
- add true-negative SVs from a population callset to a truth-set.☆15Updated 2 years ago
- ☆22Updated 2 months ago
- Container class to represent genomic locations and support genomic analysis☆18Updated this week
- Fast FASTQ sample demultiplexing in Rust.☆61Updated this week
- Lightweight Python interfaces for reading, writing, and querying Genomic Regions (BED)☆14Updated 3 weeks ago
- BigWig manpulation tools using libBigWig and htslib☆29Updated 6 months ago
- ☆21Updated 3 weeks ago
- v2.x of the microassembly based somatic variant caller☆14Updated last week
- (WIP) best-practices workflow for rare disease☆60Updated 7 months ago
- simple bioinformatics command-line (t)ools (i) (w)ished (i) (h)ad.☆44Updated last year
- ☆21Updated last year
- Numerical Encoding for Human Genetic Variants☆41Updated last year
- Converts 'MultiQC' Reports into Tidy Data Frames☆18Updated 10 months ago
- A better, faster way to count guides in CRISPR screens.☆31Updated 3 weeks ago
- bedtools-like functionality for interval sets in rust☆49Updated 6 months ago
- SQUID detects both fusion-gene and non-fusion-gene structural variations from RNA-seq data☆42Updated 2 years ago
- Long RNA-seq analysis workflow☆15Updated 2 months ago
- ☆12Updated last year
- Simple matching of HTS samples based on HLA typing☆13Updated 8 years ago
- significance testing over interval overlaps☆29Updated 4 years ago
- ☆23Updated 5 years ago
- Manuscript describing ChronQC is now available online in Bioinformatics☆18Updated 5 years ago
- A Rust library for storing generic genomic data by sorted chromosome name☆17Updated 4 months ago