quinlan-lab / bedder-rs
an API for intersections of genomic data
☆75Updated this week
Alternatives and similar repositories for bedder-rs
Users that are interested in bedder-rs are comparing it to the libraries listed below
Sorting:
- A Rust library and command line tool for working with genomic ranges and their data.☆101Updated 11 months ago
- expressions on VCFs☆83Updated 3 weeks ago
- long read RNA-seq quantification☆83Updated last week
- An efficient CLI to extract sequences from the SRA☆95Updated last week
- Creating alignment plots from bam files☆62Updated this week
- Grep for FASTQ files☆97Updated last month
- bedtools-like functionality for interval sets in rust☆52Updated 8 months ago
- gia: Genomic Interval Arithmetic☆62Updated 8 months ago
- a lexicographically-based GTF/GFF sorter☆35Updated 3 weeks ago
- Fast FASTQ sample demultiplexing in Rust.☆62Updated last month
- A high-performance BigWig and BigBed library in Rust☆88Updated last month
- Set of tools to manipulate and visualize modified base bam files☆55Updated 2 years ago
- vembrane filters VCF records using python expressions☆58Updated 2 weeks ago
- Wally: Visualization of aligned sequencing reads and contigs☆115Updated last month
- PGR-TK: Pangenome Research Tool Kit☆99Updated last year
- LongcallR is a small variant caller for single molecule long-read RNA-seq data☆51Updated this week
- Tools for fiberseq data written in rust.☆47Updated last week
- EM based transcript abundance from nanopore reads mapped to a transcriptome with minimap2☆60Updated 7 months ago
- bioinformatics toolkit in rust☆90Updated 3 weeks ago
- Human reference genome analysis sets☆52Updated last year
- ☆46Updated 8 months ago
- vcfdist: Accurately benchmarking phased variant calls☆80Updated last week
- Fast and accurate coordinate conversion between assemblies☆112Updated last month
- Toolkit for calling structural variants using short or long reads☆102Updated this week
- Haplotype-specific somatic copy number aberrations/profiling from long reads sequencing data☆49Updated last week
- A local-haplotagging-based small and structural variant caller☆76Updated this week
- Copy number caller for long read data including SNV utilization☆63Updated last month
- DEPRECATED - Workflow for the comprehensive detection and prioritization of variants in human genomes with PacBio HiFi reads☆38Updated last year
- Small variant, structural variant, and short tandem repeat phasing tool for PacBio HiFi reads☆72Updated last month
- The Flexible Demultiplexer☆30Updated last month