Alternatives and similar repositories for bedder-rs

Users that are interested in bedder-rs are comparing it to the libraries listed below

• fulcrumgenomics / fqtk
  Fast FASTQ sample demultiplexing in Rust.
  ☆62Updated last week
• vsbuffalo / granges
  A Rust library and command line tool for working with genomic ranges and their data.
  ☆101Updated last year
• noamteyssier / gia
  gia: Genomic Interval Arithmetic
  ☆62Updated 9 months ago
• ArcInstitute / xsra
  An efficient CLI to extract sequences from the SRA
  ☆101Updated this week
• brentp / vcfexpress
  expressions on VCFs
  ☆85Updated last month
• alejandrogzi / gtfsort
  a lexicographically-based GTF/GFF sorter
  ☆34Updated last month
• jackh726 / bigtools
  A high-performance BigWig and BigBed library in Rust
  ☆90Updated last week
• alignoth / alignoth
  Creating alignment plots from bam files
  ☆65Updated this week
• fulcrumgenomics / fqgrep
  Grep for FASTQ files
  ☆97Updated last month
• COMBINE-lab / oarfish
  long read RNA-seq quantification
  ☆85Updated last month
• noamteyssier / bedrs
  bedtools-like functionality for interval sets in rust
  ☆52Updated 9 months ago
• sstadick / perbase
  Per-base per-nucleotide depth analysis
  ☆129Updated 4 months ago
• wdecoster / kyber
  ☆21Updated 5 months ago
• huangnengCSU / longcallR
  LongcallR is a SNP caller for single molecule long-read RNA-seq data
  ☆59Updated 3 weeks ago
• genomic-medicine-sweden / nallo
  An analysis pipeline for long-reads from both PacBio and Oxford Nanopore Technologies (ONT), written in Nextflow.
  ☆30Updated 2 weeks ago
• vembrane / vembrane
  vembrane filters VCF records using python expressions
  ☆58Updated this week
• TimD1 / vcfdist
  vcfdist: Accurately benchmarking phased variant calls
  ☆80Updated last month
• pachterlab / splitcode
  Flexible and efficient parsing, interpreting and editing of sequencing reads
  ☆43Updated this week
• GeneDx / pgr-tk
  PGR-TK: Pangenome Research Tool Kit
  ☆99Updated last year
• evotools / nf-LO
  A Nextflow workflow to generate lift over files for any pair of genomes
  ☆65Updated 2 months ago
• mrvollger / rustybam
  bioinformatics toolkit in rust
  ☆89Updated this week
• lh3 / ref-gen
  Human reference genome analysis sets
  ☆53Updated last year
• a-slide / NanoCount
  EM based transcript abundance from nanopore reads mapped to a transcriptome with minimap2
  ☆60Updated 7 months ago
• ChristopherWilks / megadepth
  BigWig and BAM utilities
  ☆96Updated last year
• nanoporetech / pinfish
  Tools to annotate genomes using long read transcriptomics data
  ☆45Updated 4 years ago
• Psy-Fer / blue-crab
  lossless nanopore pod5 <=> s/blow5 file conversion
  ☆40Updated last month
• PMBio / pycoMeth
  DNA methylation analysis downstream to Nanopolish for Oxford Nanopore DNA sequencing datasets
  ☆28Updated last year
• PacificBiosciences / pb-human-wgs-workflow-snakemake
  DEPRECATED - Workflow for the comprehensive detection and prioritization of variants in human genomes with PacBio HiFi reads
  ☆38Updated last year
• adnaniazi / tailfindr
  An R package for estimating poly(A)-tail lengths in Oxford Nanopore RNA and DNA reads.
  ☆53Updated 7 months ago
• 10XGenomics / scan-rs
  Single-cell analysis methods in Rust
  ☆22Updated 6 months ago