quinlan-lab / bedder-rsLinks
an API for intersections of genomic data
☆75Updated this week
Alternatives and similar repositories for bedder-rs
Users that are interested in bedder-rs are comparing it to the libraries listed below
Sorting:
- A Rust library and command line tool for working with genomic ranges and their data.☆101Updated last year
- Fast FASTQ sample demultiplexing in Rust.☆63Updated 2 months ago
- A high-performance BigWig and BigBed library in Rust☆100Updated 2 months ago
- expressions on VCFs☆85Updated 3 months ago
- long read RNA-seq quantification☆89Updated last month
- bedtools-like functionality for interval sets in rust☆52Updated this week
- bioinformatics toolkit in rust☆90Updated 2 months ago
- Per-base per-nucleotide depth analysis☆137Updated last week
- Creating alignment plots from bam files☆65Updated this week
- Grep for FASTQ files☆99Updated 3 months ago
- gia: Genomic Interval Arithmetic☆65Updated 11 months ago
- a lexicographically-based GTF/GFF sorter☆36Updated 3 months ago
- An efficient CLI to extract sequences from the SRA☆111Updated last week
- Human reference genome analysis sets☆53Updated 2 years ago
- LongcallR is a SNP caller for single molecule long-read RNA-seq data☆63Updated this week
- The Flexible Demultiplexer☆33Updated this week
- Tools for fiberseq data written in rust.☆52Updated this week
- vembrane filters VCF records using python expressions☆61Updated this week
- vcfdist: Accurately benchmarking phased variant calls☆83Updated 2 weeks ago
- An R package for estimating poly(A)-tail lengths in Oxford Nanopore RNA and DNA reads.☆54Updated 9 months ago
- EM based transcript abundance from nanopore reads mapped to a transcriptome with minimap2☆61Updated 9 months ago
- Experimental features for Nextflow☆43Updated 4 months ago
- BigWig and BAM utilities☆97Updated last year
- A tool for projecting genomic alignments to transcriptomic coordinates☆36Updated last year
- ClairS-TO - a deep-learning method for tumor-only somatic variant calling☆66Updated 4 months ago
- An analysis pipeline for long-reads from both PacBio and Oxford Nanopore Technologies (ONT), written in Nextflow.☆32Updated last week
- ☆43Updated 10 months ago
- Set of tools to manipulate and visualize modified base bam files☆56Updated 3 years ago
- Easy genomic regions for short-read variant calling☆32Updated 3 weeks ago
- Haplotype-specific somatic copy number aberrations/profiling from long reads sequencing data☆57Updated last month