an API for intersections of genomic data
☆149Sep 17, 2026Updated last week
Alternatives and similar repositories for bedder-rs
Users that are interested in bedder-rs are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- A Rust library and command line tool for working with genomic ranges and their data.☆103May 29, 2024Updated 2 years ago
- A high-performance BigWig and BigBed library in Rust☆126Aug 14, 2026Updated last month
- The D4 Quantitative Data Format☆176Nov 28, 2025Updated 9 months ago
- Fast approximate string searching☆169Aug 11, 2026Updated last month
- bedtools-like functionality for interval sets in rust☆56Aug 5, 2025Updated last year
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- bioinformatics toolkit in rust☆107Aug 16, 2026Updated last month
- Rust bindings to minimap2 library☆113Sep 14, 2026Updated last week
- expressions on VCFs☆93Mar 17, 2026Updated 6 months ago
- Fast FASTX parsing and k-mer methods in Rust☆215Sep 14, 2026Updated last week
- ☆21Dec 26, 2025Updated 8 months ago
- This library provides HTSlib bindings and a high level Rust API for reading and writing BAM files.☆373Aug 17, 2026Updated last month
- convert reads from repeated measures of same piece of DNA into spaced matricies for deep learners.☆14Apr 21, 2023Updated 3 years ago
- Bioinformatics I/O libraries in Rust☆724Updated this week
- Dividing heterogeneous long-read sequencing into groups with de Bruijn graphs☆48Updated this week
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- A tool for somatic structural variant calling using long reads☆179Jun 8, 2026Updated 3 months ago
- Per-base per-nucleotide depth analysis☆151May 9, 2026Updated 4 months ago
- Extremely fast and accurate Nanopore demultiplexing☆106Sep 5, 2026Updated 2 weeks ago
- Fast FASTQ sample demultiplexing in Rust.☆71Aug 28, 2026Updated 3 weeks ago
- Genome browser and variant annotation☆399Aug 24, 2026Updated last month
- A minimal copy fastq and fasta reader built for parallel support and paired end processing☆50Updated this week
- Hierarchical binned indexed data store for on-disk genomic data.☆13Jan 18, 2025Updated last year
- A Rust library for storing generic genomic data by sorted chromosome name☆18Sep 26, 2024Updated last year
- BAM/SAM/CRAM/FASTA reader, pileup engine, BCF/BAM writing☆29Updated this week
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- An extensible and performant aligner and read mapper☆105Sep 15, 2026Updated last week
- A pairwise sequence aligner written in Rust☆153May 22, 2026Updated 4 months ago
- Open Human Genome Library☆69Dec 22, 2025Updated 9 months ago
- long read RNA-seq quantification☆124Aug 19, 2026Updated last month
- gia: Genomic Interval Arithmetic☆69Aug 21, 2024Updated 2 years ago
- Pairwise whole genome aligner☆244Sep 4, 2026Updated 2 weeks ago
- Blazingly fast, streaming duplicate detection for NGS data☆21Aug 24, 2026Updated last month
- Tearing through FASTA/Q sequences☆39Jul 9, 2026Updated 2 months ago
- A tool for sniffing out the differences in vari-Ants☆56Aug 10, 2026Updated last month
- Simple, predictable pricing with DigitalOcean hosting • AdAlways know what you'll pay with monthly caps and flat pricing. Enterprise-grade infrastructure trusted by 600k+ customers.
- Spiritual successor to picard for sequencing qc☆61Jul 19, 2026Updated 2 months ago
- A very fast interval tree data structure☆137Feb 3, 2025Updated last year
- Bam Error Stats Tool (best): analysis of error types in aligned reads.☆142Feb 14, 2025Updated last year
- using all the bits for echt rapid variant annotation and filtering☆162Jul 22, 2026Updated 2 months ago
- Identify long STRs, VNTRs, satellite DNA and other low-complexity regions in a genome☆100Jan 28, 2026Updated 7 months ago
- Long read / genome alignment software☆331Dec 16, 2025Updated 9 months ago
- Successor of bwa-mem for short-read alignment☆350Aug 13, 2026Updated last month