quinlan-lab / bedder-rsLinks
an API for intersections of genomic data
☆136Updated 2 weeks ago
Alternatives and similar repositories for bedder-rs
Users that are interested in bedder-rs are comparing it to the libraries listed below
Sorting:
- long read RNA-seq quantification☆97Updated last month
- A Rust library and command line tool for working with genomic ranges and their data.☆100Updated last year
- Per-base per-nucleotide depth analysis☆141Updated 2 weeks ago
- expressions on VCFs☆88Updated 8 months ago
- Fast FASTQ sample demultiplexing in Rust.☆66Updated 3 weeks ago
- A high-performance BigWig and BigBed library in Rust☆110Updated 2 months ago
- bioinformatics toolkit in rust☆93Updated 3 months ago
- Creating alignment plots from bam files☆78Updated last week
- Grep for FASTQ files☆103Updated last week
- bedtools-like functionality for interval sets in rust☆55Updated 4 months ago
- Experimental features for Nextflow☆48Updated 4 months ago
- An efficient CLI to extract sequences from the SRA☆118Updated last month
- Tools for fiberseq data written in rust.☆62Updated last week
- a lexicographically-based GTF/GFF sorter☆37Updated 8 months ago
- An analysis pipeline for long-reads from both PacBio and Oxford Nanopore Technologies (ONT), written in Nextflow.☆40Updated last week
- gia: Genomic Interval Arithmetic☆65Updated last year
- seqfu - Sequece Fastx Utilities☆124Updated this week
- Snakemake workflow management system and CLI generation tool☆63Updated 2 months ago
- vcfdist: Accurately benchmarking phased variant calls☆85Updated 3 months ago
- Human reference genome analysis sets☆56Updated 2 years ago
- using all the bits for echt rapid variant annotation and filtering☆152Updated 9 months ago
- A template repository for snakemake workflows.☆40Updated 3 weeks ago
- GenMap - Fast and Exact Computation of Genome Mappability☆113Updated last year
- LongcallR is a SNP caller for single molecule long-read RNA-seq data☆70Updated 2 weeks ago
- Somatic structural variant caller for long-read data☆87Updated last month
- BWT construction and search☆122Updated 2 weeks ago
- Bam Error Stats Tool (best): analysis of error types in aligned reads.☆137Updated 10 months ago
- EM based transcript abundance from nanopore reads mapped to a transcriptome with minimap2☆64Updated last year
- DEPRECATED - Workflow for the comprehensive detection and prioritization of variants in human genomes with PacBio HiFi reads☆39Updated 2 years ago
- A local-haplotagging-based small and structural variant caller☆90Updated last week