bacpop / ggCallerLinks
Bifrost graph gene caller.
☆95Updated 2 weeks ago
Alternatives and similar repositories for ggCaller
Users that are interested in ggCaller are comparing it to the libraries listed below
Sorting:
- Recombination-free trees☆60Updated last month
- post processing of bacterial pangenome gene presence/absence matrices☆61Updated 7 months ago
- Inferring bacterial recombination rates from large-scale sequencing datasets.☆42Updated 2 years ago
- Split k-mer analysis – version 2☆92Updated 2 months ago
- A comprehensive bacterial core gene-set annotation pipeline based on Roary and pairwise ILPs☆30Updated last week
- A k-mer based program for the identification of known plasmids from whole-genome sequencing reads☆35Updated 4 years ago
- a tool to filter sites in a FASTA-format whole-genome pseudo-alignment☆62Updated 3 months ago
- Split Kmer Analysis☆65Updated 3 years ago
- A toolkit for exploring prokaryotic methylation and base modifications in nanopore sequencing☆49Updated last month
- PATO is a R package designed to analyze pangenomes (set of genomes) intra or inter species.☆62Updated last year
- Indels are not ideal - quick test for interrupted ORFs in bacterial/microbial genomes☆54Updated 2 years ago
- Graph-based assembly phasing☆87Updated 5 months ago
- A tool for removing redundant genomes from a set of assemblies☆77Updated 3 weeks ago
- Calculate assocations between genes and traits☆28Updated 6 months ago
- A toolkit for prokaryotic comparative genomics☆51Updated this week
- whole genome MLST analysis☆48Updated 3 months ago
- a UNIX shell toolkit for processing and analyzing multiple sequence alignments and phylogenies☆75Updated last week
- Discover and annotate the virome☆53Updated this week
- Gene-flank analysis tool☆30Updated 9 months ago
- Automated strain separation of low-complexity metagenomes☆50Updated 3 years ago
- Identify phage regions in bacterial genomes for masking purposes☆34Updated 6 years ago
- Identify short variants and structural variants from raw sequencing data or genomic sequences☆32Updated last year
- a collection of scripts for organising bacterial genomes by species☆77Updated 3 years ago
- Bacterial GWAS analysis☆43Updated 2 months ago
- SeqSero2☆38Updated last week
- A surveillance-oriented tool to strengthen the linkage between pathogen genetic clusters and epidemiological data☆39Updated 4 months ago
- Program to quickly and accurately assemble plasmids in hybrid and long-only sequenced bacterial isolates☆77Updated last week
- reference-based long read assemblies of bacterial genomes☆51Updated 4 years ago
- Remove contaminated contigs from genomes using k-mers and taxonomies.☆59Updated last year
- zol (& fai): large-scale targeted detection and evolutionary investigation of gene clusters (i.e. BGCs, phages, etc.)☆63Updated last week