bacpop / ggCaller
Bifrost graph gene caller.
☆93Updated 5 months ago
Alternatives and similar repositories for ggCaller:
Users that are interested in ggCaller are comparing it to the libraries listed below
- post processing of bacterial pangenome gene presence/absence matrices☆58Updated this week
- Recombination-free trees☆57Updated last year
- A tool for removing redundant genomes from a set of assemblies☆70Updated last year
- A pipeline for running AMRfinderPlus and collating results into functional classes☆74Updated 6 months ago
- a collection of scripts for organising bacterial genomes by species☆76Updated 2 years ago
- Split Kmer Analysis☆62Updated 2 years ago
- A k-mer based program for the identification of known plasmids from whole-genome sequencing reads☆35Updated 4 years ago
- A toolkit for exploring prokaryotic methylation and base modifications in nanopore sequencing☆45Updated last month
- Predicting plasmid contigs from assemblies using single copy marker genes, plasmid genes, kmers - Developed by Linda van der Graaf☆48Updated 10 months ago
- Split k-mer analysis – version 2☆75Updated 3 weeks ago
- Program to quickly and accurately assemble plasmids in hybrid and long-only sequenced bacterial isolates☆60Updated last month
- GTDB taxonomy taxdump files with trackable TaxIds☆52Updated 10 months ago
- whole genome MLST analysis☆40Updated 9 months ago
- Inferring bacterial recombination rates from large-scale sequencing datasets.☆42Updated 2 years ago
- A tool for generating consensus long-read assemblies for bacterial genomes☆102Updated this week
- zol (& fai): large-scale targeted detection and evolutionary investigation of gene clusters (i.e. BGCs, phages, etc.)☆54Updated this week
- Binning Virus Genomes from Metagenomes☆61Updated 2 years ago
- IS mapping software☆53Updated 3 years ago
- Fast k-mer based tool for multi locus sequence typing (MLST)☆43Updated 4 years ago
- Python code for versatile Functional Ontology Assignments for Metagenomes searching via Hidden Markov Model (HMM) with environmental focu…☆53Updated last week
- Identify phage regions in bacterial genomes for masking purposes☆30Updated 5 years ago
- Bioinformatics pipeline for recovery and analysis of metagenome-assembled genomes☆44Updated 2 weeks ago
- Fast and accurate tool for calculating Average Nucleotide Identity (ANI) and clustering virus genomes and metagenomes☆56Updated 2 months ago
- EzAAI - High Throughput Prokaryotic AAI Calculator☆38Updated 4 months ago
- Adapter trimmer for Oxford Nanopore reads using ab initio method☆39Updated 3 months ago
- Reorients assembled microbial sequences☆112Updated 2 weeks ago
- Automated strain separation of low-complexity metagenomes☆51Updated 3 years ago
- A python library for predicting phage lifestyle based on genome sequence☆35Updated last year
- Gene-flank analysis tool☆27Updated 2 months ago
- ☆80Updated last year