bacpop / ggCallerLinks
Bifrost graph gene caller.
☆95Updated 9 months ago
Alternatives and similar repositories for ggCaller
Users that are interested in ggCaller are comparing it to the libraries listed below
Sorting:
- Recombination-free trees☆58Updated 3 months ago
- Inferring bacterial recombination rates from large-scale sequencing datasets.☆42Updated 2 years ago
- post processing of bacterial pangenome gene presence/absence matrices☆60Updated 4 months ago
- A tool for removing redundant genomes from a set of assemblies☆71Updated last year
- Split k-mer analysis – version 2☆87Updated 5 months ago
- A comprehensive bacterial core gene-set annotation pipeline based on Roary and pairwise ILPs☆29Updated 8 months ago
- Split Kmer Analysis☆65Updated 3 years ago
- Indels are not ideal - quick test for interrupted ORFs in bacterial/microbial genomes☆53Updated 2 years ago
- Program to quickly and accurately assemble plasmids in hybrid and long-only sequenced bacterial isolates☆70Updated 3 weeks ago
- a tool to filter sites in a FASTA-format whole-genome pseudo-alignment☆59Updated last month
- Automated strain separation of low-complexity metagenomes☆51Updated 3 years ago
- Identify phage regions in bacterial genomes for masking purposes☆33Updated 5 years ago
- Discover and annotate the virome☆44Updated 2 weeks ago
- whole genome MLST analysis☆45Updated last month
- A python library for predicting phage lifestyle based on genome sequence☆38Updated last year
- reference-based long read assemblies of bacterial genomes☆50Updated 3 years ago
- Python code for versatile Functional Ontology Assignments for Metagenomes searching via Hidden Markov Model (HMM) with environmental focu…☆59Updated 3 months ago
- Bacterial GWAS analysis☆42Updated this week
- A surveillance-oriented tool to strengthen the linkage between pathogen genetic clusters and epidemiological data☆38Updated last month
- zol (& fai): large-scale targeted detection and evolutionary investigation of gene clusters (i.e. BGCs, phages, etc.)☆59Updated 2 weeks ago
- skDER & CiDDER: efficient & high-resolution dereplication of microbial genomes.☆45Updated this week
- A k-mer based program for the identification of known plasmids from whole-genome sequencing reads☆35Updated 4 years ago
- ☆36Updated 3 months ago
- EzAAI - High Throughput Prokaryotic AAI Calculator☆42Updated last week
- SCAPP is a plasmid assembly tool. This tool is described in our paper: https://microbiomejournal.biomedcentral.com/articles/10.1186/s4016…☆32Updated 2 years ago
- 🦠📇 Microbial genomes-to-report pipeline☆58Updated 3 weeks ago
- PATO is a R package designed to analyze pangenomes (set of genomes) intra or inter species.☆59Updated last year
- Fast and accurate tool for calculating Average Nucleotide Identity (ANI) and clustering virus genomes and metagenomes☆87Updated last month
- A toolkit for prokaryotic comparative genomics☆49Updated 5 months ago
- Melon: metagenomic long-read-based taxonomic identification and quantification using marker genes☆36Updated 2 months ago