hoelzer-lab / ribapLinks
A comprehensive bacterial core gene-set annotation pipeline based on Roary and pairwise ILPs
☆30Updated last week
Alternatives and similar repositories for ribap
Users that are interested in ribap are comparing it to the libraries listed below
Sorting:
- Bacterial GWAS analysis☆43Updated 2 months ago
- Calculate assocations between genes and traits☆28Updated 6 months ago
- zol (& fai): large-scale targeted detection and evolutionary investigation of gene clusters (i.e. BGCs, phages, etc.)☆63Updated last week
- post processing of bacterial pangenome gene presence/absence matrices☆61Updated 7 months ago
- A toolkit for prokaryotic comparative genomics☆51Updated this week
- Melon: metagenomic long-read-based taxonomic identification and quantification using marker genes☆35Updated 5 months ago
- Recombination-free trees☆60Updated last month
- A k-mer based program for the identification of known plasmids from whole-genome sequencing reads☆35Updated 4 years ago
- MAGScoT - a MAG scoring and refinement tool☆37Updated 11 months ago
- SCAPP is a plasmid assembly tool. This tool is described in our paper: https://microbiomejournal.biomedcentral.com/articles/10.1186/s4016…☆34Updated 2 years ago
- PATO is a R package designed to analyze pangenomes (set of genomes) intra or inter species.☆62Updated last year
- Gene Absence Presence Identification tool.☆27Updated 6 months ago
- IslandPath standalone software☆33Updated last year
- Bifrost graph gene caller.☆95Updated 2 weeks ago
- Predicting plasmid contigs from assemblies using single copy marker genes, plasmid genes, kmers - Developed by Linda van der Graaf☆49Updated last year
- Classify metagenomic contigs as eukaryotic or prokaryotic☆41Updated 2 years ago
- Structural and functional annotation of eukaryotic metagenome-assembled genomes☆22Updated 2 years ago
- Downstream processing of VAMB binning for Viral Elucidation☆50Updated last year
- EzAAI - High Throughput Prokaryotic AAI Calculator☆44Updated 2 months ago
- BEAV: Bacterial Element Annotation reVamped☆69Updated last month
- a tool to filter sites in a FASTA-format whole-genome pseudo-alignment☆62Updated 3 months ago
- Inferring bacterial recombination rates from large-scale sequencing datasets.☆42Updated 2 years ago
- whole genome MLST analysis☆48Updated 3 months ago
- Bioinformatics pipeline for recovery and analysis of metagenome-assembled genomes☆51Updated last week
- zDB: comparative bacterial genomics made easy☆35Updated last week
- Ley Lab MetaGenome Profiler DataBase generator☆49Updated 2 years ago
- alignment-free coverage calculation for metagenomic binning >100 times faster☆48Updated 6 months ago
- ☆20Updated last year
- Automatic eukaryotic taxonomic classification☆28Updated 5 months ago
- ☆26Updated 2 years ago