Alternatives and similar repositories for alignment-sandbox

Users that are interested in alignment-sandbox are comparing it to the libraries listed below

• martinghunt / ziplign
  Simple-to-use interactive comparison of two bacterial genomes
  ☆22Updated last week
• EGTortuero / viga
  De novo VIral Genome Annotator
  ☆24Updated 3 weeks ago
• dr-joe-wirth / primerForge
  software to identify primers that can distinguish genomes
  ☆20Updated 2 weeks ago
• dwpeng / filterx
  process any file in tabular format. Fasta/fastq/GTF/GFF/VCF/SAM/BED
  ☆21Updated 5 months ago
• AfZheng126 / MORA
  MetagenOmic read Re-Assigner and abundance quantifier
  ☆20Updated last year
• IndexThePlanet / LoganSearch
  A k-mer search engine for all Sequence Read Archive public accessions
  ☆36Updated last year
• brianli314 / palindrome-finder
  A bioinformatics tool written in Rust to find palindromic sequences in DNA
  ☆38Updated 5 months ago
• lijuzeng / dna2bit
  ☆13Updated last year
• LoadStar822 / Chimera
  Chimera: A Versatile Metagenomic Classification Tool
  ☆20Updated last week
• shenwei356 / wfa
  Wavefront alignment algorithm (WFA) in Golang
  ☆32Updated 6 months ago
• pierrepeterlongo / back_to_sequences
  ☆46Updated 2 months ago
• esteinig / vircov
  Viral genome coverage evaluation for metagenomic diagnostics
  ☆27Updated 5 months ago
• AllTheBacteria / Phylign
  Map query sequences to the assemblies of all pre-June 2023 bacteria (https://ftp.ebi.ac.uk/pub/databases/AllTheBacteria/Releases/0.2/) on…
  ☆12Updated last year
• ICTV-VBEG / ICTV-TaxonomyChallenge
  ☆17Updated last year
• wh-xu / Hyper-Gen
  HyGen: Compact and Efficient Genome Sketching using Hyperdimensional Vectors
  ☆30Updated last year
• kevsilva / StrainFLAIR
  Strain-level abundances estimation in metagenomic samples using variation graphs
  ☆24Updated 3 years ago
• fpusan / SuperPang
  Non-redundant pangenome assemblies from multiple genomes or bins
  ☆15Updated 8 months ago
• StephenHwang / MEMO
  MEMO: MEM-based pangenome indexing for k-mer queries
  ☆20Updated last year
• mbhall88 / nohuman
  Remove human reads from a sequencing run
  ☆47Updated last month
• CAMI-challenge / CAMITAX
  CAMITAX: Taxon labels for microbial genomes
  ☆30Updated 2 years ago
• taxburst / taxburst
  sunburst plots for taxonomy - working to update Krona
  ☆44Updated 4 months ago
• kangxiongbin / StrainXpress
  StrainXpress is a de novo assembly method which base on overlap-layout-consensus (OLC) paradigm and can fast and accurately assemble high…
  ☆13Updated last year
• karel-brinda / Phylign
  Alignment against all pre-2019 bacteria on laptops within a few hours (former MOF-Search)
  ☆39Updated last year
• ldenti / palss
  ☆23Updated 5 months ago
• richarddurbin / syng
  syncmer graphs, and perhaps other sorts of sequence graphs
  ☆24Updated last month
• pierrepeterlongo / kmer2sequences
  Given a set of kmers (fasta format) and a set of sequences (fasta format), this tool will extract the sequences containing the kmers.
  ☆21Updated 2 years ago
• phac-nml / neptune
  Neptune: Genomic Signature Discovery
  ☆21Updated last year
• refresh-bio / clusty
  ☆14Updated last week
• simonerampelli / viromescan
  ViromeScan allows the user to explore and taxonomically characterize the virome from metagenomic reads, efficiently denoising samples fro…
  ☆13Updated 2 years ago
• iqbal-lab-org / varifier
  Variant call verification
  ☆16Updated 8 months ago