robertaboukhalil / alignment-sandboxLinks
Tool for exploring sequence alignment algorithms
☆13Updated 9 months ago
Alternatives and similar repositories for alignment-sandbox
Users that are interested in alignment-sandbox are comparing it to the libraries listed below
Sorting:
- De novo VIral Genome Annotator☆21Updated 9 months ago
- software to identify primers that can distinguish genomes☆21Updated 5 months ago
- Map query sequences to the assemblies of all pre-June 2023 bacteria (https://ftp.ebi.ac.uk/pub/databases/AllTheBacteria/Releases/0.2/) on…☆12Updated last year
- syncmer graphs, and perhaps other sorts of sequence graphs☆20Updated 2 months ago
- A k-mer search engine for all Sequence Read Archive public accessions☆29Updated 7 months ago
- ☆16Updated this week
- ☆12Updated 6 months ago
- PyO3 bindings and Python interface to skani, a method for fast genomic identity calculation using sparse chaining.☆27Updated last month
- MEMO: MEM-based pangenome indexing for k-mer queries☆18Updated last year
- Dividing heterogeneous long-read sequencing into groups with de Bruijn graphs☆25Updated 7 months ago
- A bioinformatics tool written in Rust to find palindromic sequences in DNA☆35Updated 4 months ago
- ☆42Updated 3 months ago
- process any file in tabular format. Fasta/fastq/GTF/GFF/VCF/SAM/BED☆21Updated 4 months ago
- Benchmarking different ways of doing read (taxonomic) classification, with a focus on removal of contamination and MTB classification☆12Updated last year
- Fast long-read mapper and whole-genome aligner (accelerated version of minimap2)☆33Updated this week
- HyGen: Compact and Efficient Genome Sketching using Hyperdimensional Vectors☆27Updated 10 months ago
- mSWEEP High-resolution sweep metagenomics using fast probabilistic inference☆14Updated 8 months ago
- Remove human reads from a sequencing run☆40Updated 8 months ago
- Summarize and filter read alignments from multiple sequencing samples (taken as sorted BAM files)☆17Updated 2 weeks ago
- ☆18Updated 4 months ago
- Non-redundant pangenome assemblies from multiple genomes or bins☆13Updated last month
- MetagenOmic read Re-Assigner and abundance quantifier☆19Updated 4 months ago
- ☆21Updated last week
- Variant call verification