robertaboukhalil / alignment-sandboxLinks
Tool for exploring sequence alignment algorithms
☆13Updated 11 months ago
Alternatives and similar repositories for alignment-sandbox
Users that are interested in alignment-sandbox are comparing it to the libraries listed below
Sorting:
- process any file in tabular format. Fasta/fastq/GTF/GFF/VCF/SAM/BED☆21Updated last week
- De novo VIral Genome Annotator☆23Updated 11 months ago
- software to identify primers that can distinguish genomes☆21Updated 7 months ago
- A k-mer search engine for all Sequence Read Archive public accessions☆31Updated 10 months ago
- Simple-to-use interactive comparison of two bacterial genomes☆16Updated 2 months ago
- MEMO: MEM-based pangenome indexing for k-mer queries☆18Updated last year
- Map query sequences to the assemblies of all pre-June 2023 bacteria (https://ftp.ebi.ac.uk/pub/databases/AllTheBacteria/Releases/0.2/) on…☆12Updated last year
- A bioinformatics tool written in Rust to find palindromic sequences in DNA☆35Updated 6 months ago
- syncmer graphs, and perhaps other sorts of sequence graphs☆21Updated 4 months ago
- HyGen: Compact and Efficient Genome Sketching using Hyperdimensional Vectors☆29Updated last year
- ☆44Updated last month
- ☆12Updated 8 months ago
- Wavefront alignment algorithm (WFA) in Golang☆30Updated last month
- Remove human reads from a sequencing run☆40Updated last month
- Non-redundant pangenome assemblies from multiple genomes or bins☆13Updated 3 months ago
- Variant call verification☆16Updated 3 months ago
- ☆20Updated last year
- Hierarchical binned indexed data store for on-disk genomic data.☆14Updated 7 months ago
- Chimera: A Versatile Metagenomic Classification Tool☆19Updated 4 months ago
- PyO3 bindings and Python interface to skani, a method for fast genomic identity calculation using sparse chaining.☆27Updated last week
- Dynamic programming for aa-to-nt alignment with affine gap, splicing and frameshift☆19Updated 11 months ago
- Paint genomes with taxa-specific k-mer probabilities☆15Updated 3 years ago
- Visualization tool for (meta)genome assembly graphs☆24Updated last year
- easy_sbatch - Batch submitting Slurm jobs with script templates☆17Updated 3 years ago
- ☆21Updated 2 months ago
- CAMITAX: Taxon labels for microbial genomes☆30Updated last year
- Strain-level abundances estimation in metagenomic samples using variation graphs☆25Updated 2 years ago
- ☆17Updated 10 months ago
- Robust individual and aggregate checksums for nucleotide sequences☆17Updated last year
- Nanopore plasmid pipeline (FAST5 basecalling, assembly, plasmid identification and antimicrobial resistance genes identification).☆13Updated 4 years ago