Tool for exploring sequence alignment algorithms
☆14Aug 30, 2024Updated 2 years ago
Alternatives and similar repositories for alignment-sandbox
Users that are interested in alignment-sandbox are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Catalogue of pairwise alignment algorithms and benchmarks☆25Jan 6, 2026Updated 9 months ago
- ☆14Dec 26, 2025Updated 10 months ago
- MEMO: MEM-based pangenome indexing for k-mer queries☆20Jun 11, 2024Updated 2 years ago
- Guess till correct: Gungnir codec enabling high error-tolerance and low-redundancy DNA storage through substantial computing power☆13Mar 2, 2026Updated 7 months ago
- Taxonomy classification of viral sequences / contigs☆13Jul 15, 2025Updated last year
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Map query sequences to the assemblies of all pre-June 2023 bacteria (https://ftp.ebi.ac.uk/pub/databases/AllTheBacteria/Releases/0.2/) on…☆12May 22, 2024Updated 2 years ago
- 🐪Classification through yAML Heuristic Mapping Protocol 🐪☆10Jun 16, 2026Updated 4 months ago
- Experiments with using BIGSI data structure for metagenomic and QC applications☆19Aug 12, 2024Updated 2 years ago
- process any file in tabular format. Fasta/fastq/GTF/GFF/VCF/SAM/BED☆24Sep 3, 2026Updated last month
- Awesome lists of metagenome-assembled genome (MAG) datasets☆18May 18, 2026Updated 5 months ago
- Measure research software reach without hand-counting the internet. Dated snapshots, legit totals, grant-ready reports.☆26Oct 1, 2026Updated 3 weeks ago
- A "Navie" Implementation of the Wavefront Algorithm For Sequence Alignment with Gap-Affine Scoring☆14May 29, 2026Updated 5 months ago
- Tool intended to pull out sequences and annotations between insertion sites specified by the user.☆15Apr 10, 2026Updated 6 months ago
- Fast and space-efficient taxonomic classification of long reads☆47Jul 16, 2026Updated 3 months ago
- End-to-end encrypted email - Proton Mail • AdSpecial offer: 40% Off Yearly / 80% Off First Month. All Proton services are open source and independently audited for security.
- Melon: metagenomic long-read-based taxonomic identification and quantification using marker genes☆38Jun 4, 2026Updated 4 months ago
- One pure-Rust binary that finds genes in phages, viruses, giant viruses, crassphages, bacteria, archaea, eukaryotes — and raw sequencing …☆36Oct 14, 2026Updated 2 weeks ago
- Wavefront alignment algorithm (WFA) in Golang☆33Updated this week
- ☆18Oct 7, 2024Updated 2 years ago
- Make SVG figures out of the Burrows-Wheeler Matrix and various auxiliary text-space and BWT-space structures☆12Oct 14, 2025Updated last year
- Remove human reads from a sequencing run☆53Jun 29, 2026Updated 4 months ago
- How many distinct k-mers are there in a sequence?☆11Feb 4, 2026Updated 8 months ago
- Pipeline for analyzing rare mutations in metagenome-assembled genomes☆10Apr 4, 2025Updated last year
- Run shell commands in a scientifically reproducible and robust way☆35Sep 11, 2026Updated last month
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Indexes genomes using SNVs, MLST, or kmers for rapid querying, clustering, and visualization.☆12Feb 2, 2023Updated 3 years ago
- De novo VIral Genome Annotator☆26Jan 11, 2026Updated 9 months ago
- Chimera: A Versatile Metagenomic Classification Tool☆21Oct 20, 2026Updated last week
- NCBI-style taxdump files for International Committee on Taxonomy of Viruses (ICTV)☆22May 3, 2025Updated last year
- A novel method for sequence similarity estimation☆27Mar 23, 2024Updated 2 years ago
- ☆41Apr 9, 2026Updated 6 months ago
- ViromeQC is a computational tool to benchmark and quantify non-viral contamination in VLP-enrihed viromes. ViromeQC provides an enrichmen…☆21Nov 15, 2022Updated 3 years ago
- Skiver: Reference-free quality control of (meta)genomic sequencing datasets using (k, v)-mer sketches☆13Aug 19, 2026Updated 2 months ago
- ☆20Sep 16, 2026Updated last month
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- A curated database of completed assemblies with taxonomy IDs☆53Updated this week
- A taxonomic classifier of plasmids☆32Jul 7, 2021Updated 5 years ago
- Compute hash digests for DNA sequences in a FASTA file☆12May 31, 2026Updated 4 months ago
- gemsparcl 💎✨ Rapid and consistent clustering of millions of genomes highlights the diversity of prokaryotic life☆19Jun 16, 2026Updated 4 months ago
- ☆18Jul 27, 2023Updated 3 years ago
- A collection of genomics software tools written in Go (golang).☆96Updated this week
- Benchmarking FASTQ compression with 'mature' compression algorithms☆44Sep 19, 2024Updated 2 years ago