Alternatives and similar repositories for alignment-sandbox:

Users that are interested in alignment-sandbox are comparing it to the libraries listed below

• dr-joe-wirth / primerForge
  software to identify primers that can distinguish genomes
  ☆21Updated 2 months ago
• EGTortuero / viga
  De novo VIral Genome Annotator
  ☆21Updated 6 months ago
• AllTheBacteria / Phylign
  Map query sequences to the assemblies of all pre-June 2023 bacteria (https://ftp.ebi.ac.uk/pub/databases/AllTheBacteria/Releases/0.2/) on…
  ☆12Updated 10 months ago
• mbhall88 / nohuman
  Remove human reads from a sequencing run
  ☆38Updated 6 months ago
• lijuzeng / dna2bit
  ☆12Updated 4 months ago
• AfZheng126 / MORA
  MetagenOmic read Re-Assigner and abundance quantifier
  ☆18Updated 2 months ago
• pierrepeterlongo / back_to_sequences
  ☆41Updated 3 weeks ago
• LoadStar822 / Chimera
  Chimera: A Versatile Metagenomic Classification Tool
  ☆13Updated this week
• mbhall88 / lrge
  Genome size estimation from long read overlaps
  ☆51Updated 3 months ago
• dwpeng / filterx
  process any file in tabular format. Fasta/fastq/GTF/GFF/VCF/SAM/BED
  ☆22Updated last month
• martinghunt / tna
  ☆13Updated last week
• fawaz-dabbaghieh / gfa_subgraphs
  Extracts subgraphs or components from a graph in GFA format
  ☆23Updated 4 months ago
• SilvioWeging / kASA
  kASA - k-Mer Analysis of Sequences based on Amino acid-like encoding
  ☆23Updated last year
• oxli-bio / oxli
  k-mers and the like
  ☆21Updated last week
• althonos / pyskani
  PyO3 bindings and Python interface to skani, a method for fast genomic identity calculation using sparse chaining.
  ☆27Updated 3 weeks ago
• brianli314 / palindrome-finder
  A bioinformatics tool written in Rust to find palindromic sequences in DNA
  ☆34Updated 2 months ago
• iqbal-lab-org / make_prg
  Code to create a PRG from a Multiple Sequence Alignment file
  ☆24Updated last year
• iqbal-lab-org / varifier
  Variant call verification
  ☆16Updated 2 months ago
• lh3 / gffio
  ☆32Updated 2 years ago
• fpusan / SuperPang
  Non-redundant pangenome assemblies from multiple genomes or bins
  ☆13Updated last month
• rpetit3 / fastq-scan
  Output FASTQ summary statistics in JSON format
  ☆29Updated 2 years ago
• at-cg / mm2-plus
  Fast long-read mapper and whole-genome aligner (accelerated version of minimap2)
  ☆29Updated 3 months ago
• jonas-fuchs / virHEAT
  Visualize microbial evolution at the SNP level!
  ☆14Updated 4 months ago
• PROBIC / mSWEEP
  mSWEEP High-resolution sweep metagenomics using fast probabilistic inference
  ☆14Updated 5 months ago
• kevsilva / StrainFLAIR
  Strain-level abundances estimation in metagenomic samples using variation graphs
  ☆25Updated 2 years ago
• JensUweUlrich / ReadBouncer
  Fast and scalable nanopore adaptive sampling
  ☆33Updated last year
• wh-xu / Hyper-Gen
  HyGen: Compact and Efficient Genome Sketching using Hyperdimensional Vectors
  ☆27Updated 7 months ago
• shenwei356 / wfa
  Wavefront alignment algorithm (WFA) in Golang
  ☆29Updated 5 months ago
• ldenti / palss
  ☆19Updated 3 weeks ago
• LuoGroup2023 / PanTax
  Strain-level taxonomic classification of metagenomic data using pangenome graphs
  ☆23Updated this week