zaeleus / noodlesLinks
Bioinformatics I/O libraries in Rust
☆599Updated last week
Alternatives and similar repositories for noodles
Users that are interested in noodles are comparing it to the libraries listed below
Sorting:
- This library provides HTSlib bindings and a high level Rust API for reading and writing BAM files.☆330Updated last week
- A set of command line utilities based on Rust-Bio.☆197Updated last year
- Fast FASTX parsing and k-mer methods in Rust☆192Updated 3 months ago
- This library provides implementations of many algorithms and data structures that are useful for bioinformatics. All provided implementat…☆1,717Updated last week
- Quickly search, compare, and analyze genomic and metagenomic data sets.☆512Updated last week
- Explore 5,000+ genomes in the terminal. Light, blazing fast 🚀, vim-motion.☆369Updated last week
- Performant Pythonic GenomicRanges☆478Updated 4 months ago
- cython + htslib == fast VCF and BCF processing☆407Updated 10 months ago
- Flexible, uncertainty-aware variant calling with parameter free filtration via FDR control.☆127Updated last week
- WebAssembly modules for genomics☆252Updated last month
- 🐟 🔬🦀 alevin-fry is an efficient and flexible tool for processing single-cell sequencing data, currently focused on single-cell transc…☆189Updated 2 months ago
- A curated collection of Nextflow implementation patterns☆363Updated last year
- The D4 Quantitative Data Format☆166Updated 2 months ago
- Genome browser and variant annotation☆365Updated this week
- Analysis pipeline to detect germline or somatic variants (pre-processing, variant calling and annotation) from WGS / targeted sequencing☆458Updated this week
- Randomly subsample sequencing reads or alignments☆232Updated last week
- GFF/GTF utility providing format conversions, region filtering, FASTA sequence extraction and more☆423Updated 6 months ago
- The Ensembl Variant Effect Predictor predicts the functional effects of genomic variants☆495Updated this week
- A tool to find sequencing data and metadata from public databases.☆580Updated 11 months ago
- Read-based phasing of genomic variants, also called haplotype assembly☆375Updated last month
- Transcript assembly and quantification for RNA-Seq☆451Updated this week
- Embeddable genomic visualization component based on the Integrative Genomics Viewer☆680Updated this week
- Plot structural variant signals from many BAMs and CRAMs☆544Updated last year
- Read alignment statistics for metagenomics☆358Updated this week
- UCSC Genome Browser source tree. Stable branch: "beta".☆239Updated this week
- genes and genomes at your fingertips☆395Updated 2 months ago
- Work with bioinformatic files using Arrow, Polars, and/or DuckDB☆186Updated 4 months ago
- Nanopore sequence read simulator☆274Updated 4 months ago
- bedtools - the swiss army knife for genome arithmetic☆985Updated 4 months ago
- Efficient pythonic random access to fasta subsequences☆478Updated last month