Bioinformatics I/O libraries in Rust
☆724Sep 22, 2026Updated this week
Alternatives and similar repositories for noodles
Users that are interested in noodles are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- This library provides HTSlib bindings and a high level Rust API for reading and writing BAM files.☆374Aug 17, 2026Updated last month
- This library provides implementations of many algorithms and data structures that are useful for bioinformatics. All provided implementat…☆1,839Updated this week
- Fast FASTX parsing and k-mer methods in Rust☆215Sep 14, 2026Updated last week
- The D4 Quantitative Data Format☆176Nov 28, 2025Updated 9 months ago
- Per-base per-nucleotide depth analysis☆151May 9, 2026Updated 4 months ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- A high-performance BigWig and BigBed library in Rust☆126Aug 14, 2026Updated last month
- A Rust library and command line tool for working with genomic ranges and their data.☆103May 29, 2024Updated 2 years ago
- bedtools-like functionality for interval sets in rust☆56Aug 5, 2025Updated last year
- Rust bindings to minimap2 library☆113Sep 14, 2026Updated last week
- an API for intersections of genomic data☆149Sep 17, 2026Updated last week
- bioinformatics toolkit in rust☆108Aug 16, 2026Updated last month
- A set of command line utilities based on Rust-Bio.☆205Jun 24, 2024Updated 2 years ago
- gia: Genomic Interval Arithmetic☆69Aug 21, 2024Updated 2 years ago
- A pairwise sequence aligner written in Rust☆153May 22, 2026Updated 4 months ago
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- Alignment-based gene expression quantification☆40Aug 4, 2026Updated last month
- Bam Error Stats Tool (best): analysis of error types in aligned reads.☆142Feb 14, 2025Updated last year
- A bit-packed k-mer representation (and relevant utilities) for rust☆47Jun 26, 2024Updated 2 years ago
- Command line utility for manipulating FASTQ files☆103Updated this week
- A very fast interval tree data structure☆137Feb 3, 2025Updated last year
- SIMD-accelerated library for computing global and X-drop affine gap penalty sequence-to-sequence or sequence-to-profile alignments using …☆142Jun 23, 2024Updated 2 years ago
- FASTA and FASTQ parsing in Rust☆85Mar 14, 2025Updated last year
- Simple and transparent support for compressed files.☆81Updated this week
- Grep for FASTQ files☆104Jul 9, 2026Updated 2 months ago
- End-to-end encrypted cloud storage - Proton Drive • AdSpecial offer: 40% Off Yearly / 80% Off First Month. Protect your most important files, photos, and documents from prying eyes.
- Cute tricks for SIMD vectorized binary encoding and decoding of nucleotides, in Rust.☆131Dec 30, 2020Updated 5 years ago
- Work with bioinformatic files using Arrow, Polars, and/or DuckDB☆196Mar 10, 2025Updated last year
- Command line utility for working with next-generation sequencing files.☆39Jun 24, 2025Updated last year
- Flexible, uncertainty-aware variant calling with parameter free filtration via FDR control.☆140Updated this week
- BAM/SAM/CRAM/FASTA reader, pileup engine, BCF/BAM writing☆29Updated this week
- WebAssembly modules for genomics☆277Updated this week
- Fast and exact gap-affine partial order alignment☆71Sep 16, 2026Updated last week
- Fast approximate string searching☆169Aug 11, 2026Updated last month
- An extensible and performant aligner and read mapper☆105Sep 15, 2026Updated last week
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- WFA-lib: Wavefront alignment algorithm library v2☆228Aug 7, 2026Updated last month
- Fast interval intersection library☆46Jul 14, 2026Updated 2 months ago
- GBZ file format for pangenome graphs☆46Sep 14, 2026Updated last week
- ntHash implementation in Rust☆36Jul 12, 2024Updated 2 years ago
- using all the bits for echt rapid variant annotation and filtering☆162Jul 22, 2026Updated 2 months ago
- base-accurate DNA sequence alignments using WFA and mashmap3☆224Updated this week
- Benchmarking programming languages/implementations for common tasks in Bioinformatics☆185Dec 9, 2021Updated 4 years ago