Alternatives and similar repositories for noodles:

Users that are interested in noodles are comparing it to the libraries listed below

• rust-bio / rust-htslib
  This library provides HTSlib bindings and a high level Rust API for reading and writing BAM files.
  ☆324Updated last month
• rust-bio / rust-bio-tools
  A set of command line utilities based on Rust-Bio.
  ☆193Updated 10 months ago
• onecodex / needletail
  Fast FASTX parsing and k-mer methods in Rust
  ☆185Updated this week
• zeqianli / tgv
  Explore genomes in the terminal. Light, blazing fast 🚀, vim-motion.
  ☆223Updated this week
• 38 / d4-format
  The D4 Quantitative Data Format
  ☆161Updated this week
• varlociraptor / varlociraptor
  Flexible, uncertainty-aware variant calling with parameter free filtration via FDR control.
  ☆124Updated last week
• sourmash-bio / sourmash
  Quickly search, compare, and analyze genomic and metagenomic data sets.
  ☆502Updated this week
• biowasm / biowasm
  WebAssembly modules for genomics
  ☆243Updated 2 months ago
• gpertea / stringtie
  Transcript assembly and quantification for RNA-Seq
  ☆433Updated last week
• pyranges / pyranges
  Performant Pythonic GenomicRanges
  ☆468Updated last month
• wwood / CoverM
  Read alignment statistics for metagenomics
  ☆332Updated 2 weeks ago
• COMBINE-lab / alevin-fry
  🐟 🔬🦀 alevin-fry is an efficient and flexible tool for processing single-cell sequencing data, currently focused on single-cell transc…
  ☆182Updated last month
• gpertea / gffread
  GFF/GTF utility providing format conversions, region filtering, FASTA sequence extraction and more
  ☆409Updated 4 months ago
• mdshw5 / pyfaidx
  Efficient pythonic random access to fasta subsequences
  ☆468Updated 6 months ago
• lh3 / bioawk
  BWK awk modified for biological data
  ☆613Updated 2 years ago
• Ensembl / ensembl-vep
  The Ensembl Variant Effect Predictor predicts the functional effects of genomic variants
  ☆476Updated 3 weeks ago
• mbhall88 / rasusa
  Randomly subsample sequencing reads or alignments
  ☆227Updated 4 months ago
• arq5x / bedtools2
  bedtools - the swiss army knife for genome arithmetic
  ☆979Updated last month
• whatshap / whatshap
  Read-based phasing of genomic variants, also called haplotype assembly
  ☆364Updated 2 weeks ago
• rust-bio / rust-bio
  This library provides implementations of many algorithms and data structures that are useful for bioinformatics. All provided implementat…
  ☆1,684Updated 2 weeks ago
• brentp / cyvcf2
  cython + htslib == fast VCF and BCF processing
  ☆395Updated 7 months ago
• brentp / vcfanno
  annotate a VCF with other VCFs/BEDs/tabixed files
  ☆375Updated last year
• eggnogdb / eggnog-mapper
  Fast genome-wide functional annotation through orthology assignment
  ☆610Updated 11 months ago
• rrwick / Unicycler
  hybrid assembly pipeline for bacterial genomes
  ☆596Updated 9 months ago
• ucscGenomeBrowser / kent
  UCSC Genome Browser source tree. Stable branch: "beta".
  ☆234Updated this week
• freebayes / freebayes
  Bayesian haplotype-based genetic polymorphism discovery and genotyping.
  ☆821Updated 2 months ago
• nf-core / sarek
  Analysis pipeline to detect germline or somatic variants (pre-processing, variant calling and annotation) from WGS / targeted sequencing
  ☆441Updated this week
• ryanlayer / samplot
  Plot structural variant signals from many BAMs and CRAMs
  ☆541Updated 9 months ago
• bcgsc / NanoSim
  Nanopore sequence read simulator
  ☆265Updated last month
• agshumate / Liftoff
  An accurate GFF3/GTF lift over pipeline
  ☆479Updated last year