Bioinformatics I/O libraries in Rust
☆655Mar 1, 2026Updated this week
Alternatives and similar repositories for noodles
Users that are interested in noodles are comparing it to the libraries listed below
Sorting:
- This library provides HTSlib bindings and a high level Rust API for reading and writing BAM files.☆361Jan 29, 2026Updated last month
- This library provides implementations of many algorithms and data structures that are useful for bioinformatics. All provided implementat…☆1,776Feb 23, 2026Updated last week
- Fast FASTX parsing and k-mer methods in Rust☆210Jan 27, 2026Updated last month
- Per-base per-nucleotide depth analysis☆146Feb 4, 2026Updated last month
- The D4 Quantitative Data Format☆169Nov 28, 2025Updated 3 months ago
- A Rust library and command line tool for working with genomic ranges and their data.☆100May 29, 2024Updated last year
- A high-performance BigWig and BigBed library in Rust☆112Feb 13, 2026Updated 3 weeks ago
- bioinformatics toolkit in rust☆98Feb 15, 2026Updated 2 weeks ago
- bedtools-like functionality for interval sets in rust☆55Aug 5, 2025Updated 7 months ago
- Rust bindings to minimap2 library☆109Feb 22, 2026Updated last week
- A pairwise sequence aligner written in Rust☆145Jan 27, 2026Updated last month
- gia: Genomic Interval Arithmetic☆66Aug 21, 2024Updated last year
- A set of command line utilities based on Rust-Bio.☆205Jun 24, 2024Updated last year
- Grep for FASTQ files☆103Dec 17, 2025Updated 2 months ago
- an API for intersections of genomic data☆143Feb 28, 2026Updated last week
- A very fast interval tree data structure☆131Feb 3, 2025Updated last year
- Alignment-based gene expression quantification☆35Feb 8, 2026Updated 3 weeks ago
- SIMD-accelerated library for computing global and X-drop affine gap penalty sequence-to-sequence or sequence-to-profile alignments using …☆139Jun 23, 2024Updated last year
- Cute tricks for SIMD vectorized binary encoding and decoding of nucleotides, in Rust.☆129Dec 30, 2020Updated 5 years ago
- Bam Error Stats Tool (best): analysis of error types in aligned reads.☆141Feb 14, 2025Updated last year
- Work with bioinformatic files using Arrow, Polars, and/or DuckDB☆195Mar 10, 2025Updated 11 months ago
- FASTA and FASTQ parsing in Rust☆82Mar 14, 2025Updated 11 months ago
- A bit-packed k-mer representation (and relevant utilities) for rust☆47Jun 26, 2024Updated last year
- Simple and transparent support for compressed files.☆81Feb 27, 2026Updated last week
- Command line utility for manipulating Illumina-generated FASTQ files.☆95Feb 5, 2026Updated last month
- WFA-lib: Wavefront alignment algorithm library v2☆210Updated this week
- Flexible, uncertainty-aware variant calling with parameter free filtration via FDR control.☆134Feb 25, 2026Updated last week
- Genome browser and variant annotation☆391Oct 30, 2025Updated 4 months ago
- expressions on VCFs☆91Apr 19, 2025Updated 10 months ago
- Benchmarking programming languages/implementations for common tasks in Bioinformatics☆185Dec 9, 2021Updated 4 years ago
- base-accurate DNA sequence alignments using WFA and mashmap3☆210Jan 30, 2026Updated last month
- Fast interval intersection library☆44Aug 20, 2025Updated 6 months ago
- WebAssembly modules for genomics☆265Updated this week
- using all the bits for echt rapid variant annotation and filtering☆153Feb 18, 2026Updated 2 weeks ago
- ntHash implementation in Rust☆36Jul 12, 2024Updated last year
- abPOA: an SIMD-based C library for fast partial order alignment using adaptive band☆135Feb 22, 2026Updated last week
- GBZ file format for pangenome graphs☆46Feb 18, 2026Updated 2 weeks ago
- Remove human reads from a sequencing run☆48Updated this week
- Assembled Genomes Compressor☆178Nov 25, 2024Updated last year