Alternatives and similar repositories for noodles

Users that are interested in noodles are comparing it to the libraries listed below

• rust-bio / rust-htslib
  This library provides HTSlib bindings and a high level Rust API for reading and writing BAM files.
  ☆330Updated 3 weeks ago
• rust-bio / rust-bio-tools
  A set of command line utilities based on Rust-Bio.
  ☆196Updated last year
• onecodex / needletail
  Fast FASTX parsing and k-mer methods in Rust
  ☆192Updated 2 months ago
• rust-bio / rust-bio
  This library provides implementations of many algorithms and data structures that are useful for bioinformatics. All provided implementat…
  ☆1,713Updated last month
• 38 / d4-format
  The D4 Quantitative Data Format
  ☆164Updated 2 months ago
• COMBINE-lab / alevin-fry
  🐟 🔬🦀 alevin-fry is an efficient and flexible tool for processing single-cell sequencing data, currently focused on single-cell transc…
  ☆186Updated last month
• varlociraptor / varlociraptor
  Flexible, uncertainty-aware variant calling with parameter free filtration via FDR control.
  ☆126Updated this week
• whatshap / whatshap
  Read-based phasing of genomic variants, also called haplotype assembly
  ☆373Updated 3 weeks ago
• gpertea / stringtie
  Transcript assembly and quantification for RNA-Seq
  ☆447Updated this week
• zeqianli / tgv
  Explore 5,000+ genomes in the terminal. Light, blazing fast 🚀, vim-motion.
  ☆368Updated this week
• Ensembl / ensembl-vep
  The Ensembl Variant Effect Predictor predicts the functional effects of genomic variants
  ☆491Updated 2 weeks ago
• brentp / cyvcf2
  cython + htslib == fast VCF and BCF processing
  ☆403Updated 9 months ago
• nf-core / sarek
  Analysis pipeline to detect germline or somatic variants (pre-processing, variant calling and annotation) from WGS / targeted sequencing
  ☆452Updated this week
• kcleal / gw
  Genome browser and variant annotation
  ☆325Updated this week
• mdshw5 / pyfaidx
  Efficient pythonic random access to fasta subsequences
  ☆473Updated 3 weeks ago
• pachterlab / ffq
  A tool to find sequencing data and metadata from public databases.
  ☆580Updated 10 months ago
• lindenb / jvarkit
  Java utilities for Bioinformatics
  ☆503Updated 2 weeks ago
• mbhall88 / rasusa
  Randomly subsample sequencing reads or alignments
  ☆232Updated 7 months ago
• pyranges / pyranges
  Performant Pythonic GenomicRanges
  ☆475Updated 3 months ago
• nextflow-io / patterns
  A curated collection of Nextflow implementation patterns
  ☆363Updated last year
• biowasm / biowasm
  WebAssembly modules for genomics
  ☆249Updated 2 weeks ago
• gpertea / gffread
  GFF/GTF utility providing format conversions, region filtering, FASTA sequence extraction and more
  ☆420Updated 6 months ago
• sourmash-bio / sourmash
  Quickly search, compare, and analyze genomic and metagenomic data sets.
  ☆510Updated this week
• malonge / RagTag
  Tools for fast and flexible genome assembly scaffolding and improvement
  ☆514Updated last year
• agshumate / Liftoff
  An accurate GFF3/GTF lift over pipeline
  ☆487Updated last year
• marbl / canu
  A single molecule sequence assembler for genomes large and small.
  ☆680Updated last month
• NBISweden / AGAT
  Another Gtf/Gff Analysis Toolkit https://nbisweden.github.io/AGAT/
  ☆510Updated last week
• ryanlayer / samplot
  Plot structural variant signals from many BAMs and CRAMs
  ☆544Updated 11 months ago
• wwood / CoverM
  Read alignment statistics for metagenomics
  ☆349Updated last month
• cmdcolin / oddgenes
  A small database of weird gene annotations
  ☆203Updated last month