shenwei356 / LexicMap
LexicMap: efficient sequence alignment against millions of prokaryotic genomes
☆86Updated last week
Related projects: ⓘ
- ultrafast taxonomic profiling and genome querying for metagenomic samples by abundance-corrected minhash.☆136Updated 2 weeks ago
- Binning Virus Genomes from Metagenomes☆55Updated 2 years ago
- Supporting code for uncultivated gut virus manuscript☆64Updated last year
- Bifrost graph gene caller.☆86Updated last month
- CLI tool to annotate genes with KOfam☆69Updated last year
- PHANOTATE: a tool to annotate phage genomes.☆67Updated 6 months ago
- A pipeline for running AMRfinderPlus and collating results into functional classes☆68Updated last month
- Automated long-read first bacterial genome assembly tool implemented in Snakemake using Snaketool.☆94Updated this week
- GenoVi, an automated customizable circular genome visualizer for bacteria and archaea☆77Updated last year
- A pipeline to simulate sequencing reads, such as Amplicon, Target Capture, Metagenome, and Whole genome data.☆27Updated 4 months ago
- Strain resolver for metagenomics☆67Updated last month
- Open-source usearch☆74Updated 3 months ago
- Protein hint generation pipeline for gene finding in eukaryotic genomes☆55Updated 10 months ago
- Detection of incorrectly labeled sequences across kingdoms☆77Updated last year
- ARTIC SARS-CoV-2 workflow and reporting☆47Updated this week
- Reorients assembled microbial sequences☆95Updated this week
- Small variant calling for haploid samples☆23Updated this week
- A tool for classifying prokaryote protein sequences into COG(Cluster of Orthologous Genes) functional category☆52Updated last week
- A bioinformatic toolkit to align genome assemblies into pangenome graphs☆83Updated this week
- Explore ploidy levels from NGS data alone☆38Updated last year
- A versatile toolkit for k-mers with taxonomic information☆74Updated last month
- hecatomb is a virome analysis pipeline for analysis of Illumina sequence data☆54Updated 3 months ago
- Split k-mer analysis – version 2☆57Updated last month
- ☆78Updated last year
- Python code for versatile Functional Ontology Assignments for Metagenomes searching via Hidden Markov Model (HMM) with environmental focu…☆47Updated last week
- GTDB taxonomy taxdump files with trackable TaxIds☆46Updated 4 months ago
- ☆65Updated 8 months ago
- MetaMDBG: a lightweight assembler for long and accurate metagenomics reads.☆89Updated 2 weeks ago
- 🦠📇 Microbial genomes-to-report pipeline☆52Updated last month
- Rapid determination of appropriate reference genomes.☆88Updated 8 months ago