LexicMap: efficient sequence alignment against millions of prokaryotic genomes
☆223Aug 9, 2026Updated this week
Alternatives and similar repositories for LexicMap
Users that are interested in LexicMap are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- A new high-resolution long-read metagenome assembler for even noisy reads☆163Jul 3, 2026Updated last month
- ultrafast taxonomic profiling and genome querying for metagenomic samples by abundance-corrected minhash.☆315Feb 3, 2026Updated 6 months ago
- A tool for generating consensus long-read assemblies for bacterial genomes☆236Updated this week
- MetaMDBG: a lightweight assembler for long and accurate metagenomics reads.☆227May 9, 2026Updated 3 months ago
- Fast, robust ANI and aligned fraction for (metagenomic) genomes and contigs.☆260May 13, 2026Updated 2 months ago
- End-to-end encrypted cloud storage - Proton Drive • AdSpecial offer: 40% Off Yearly / 80% Off First Month. Protect your most important files, photos, and documents from prying eyes.
- Strain-level haplotyping for metagenomes with short or long-reads.☆69Apr 10, 2025Updated last year
- geNomad: Identification of mobile genetic elements☆328Mar 29, 2026Updated 4 months ago
- Accurate metagenomic profiling && Fast large-scale sequence/genome searching☆219Apr 24, 2026Updated 3 months ago
- Follow up to Grace Blackwell's 661k dataset, for 2023☆152Jun 10, 2026Updated 2 months ago
- Fast DNA search and [host] depletion using minimizers☆120Updated this week
- Rapid & standardized genome annotation using protein structural information☆72Jul 2, 2026Updated last month
- Reorients assembled microbial sequences☆143Jun 30, 2026Updated last month
- Bioinformatics tool for Locus Visualisation☆171Mar 30, 2026Updated 4 months ago
- Amplicon sequencing variants from 16s ONT R10.4 / HiFi long reads☆51Updated this week
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Remove human reads from a sequencing run☆52Jun 29, 2026Updated last month
- A versatile toolkit for k-mers with taxonomic information☆84Aug 28, 2025Updated 11 months ago
- Pharokka is a rapid standardised annotation tool for bacteriophage genomes and metagenomes.☆222Updated this week
- Cython bindings and Python interface to Prodigal, an ORF finder for genomes and metagenomes. Now with SIMD!☆189Mar 17, 2026Updated 4 months ago
- Rapid & standardized annotation of bacterial genomes, MAGs & plasmids☆664Updated this week
- Fast long-read mapper and whole-genome aligner (accelerated version of minimap2)☆61Jul 5, 2026Updated last month
- Genome size estimation from long read overlaps☆92Updated this week
- Successor of bwa-mem for short-read alignment☆319Updated this week
- Fast approximate string searching☆162Updated this week
- Bare Metal GPUs on DigitalOcean Gradient AI • AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- PyO3 bindings and Python interface to skani, a method for fast genomic identity calculation using sparse chaining.☆29Aug 20, 2025Updated 11 months ago
- Plasmid analysis using rearrangement distances☆56Jul 19, 2026Updated 3 weeks ago
- Pairwise whole genome aligner☆243Jul 29, 2026Updated last week
- Universal and efficient structure-based core gene phylogeny with Foldseek and ProstT5☆91Mar 12, 2026Updated 4 months ago
- ☆35Updated this week
- Assessing the quality of metagenome-derived genome bins using machine learning☆275Mar 20, 2025Updated last year
- An extensible and performant aligner and read mapper☆100Jul 27, 2026Updated last week
- Novelty-inclusive microbial (and now dsDNA phage) community profiling of shotgun metagenomes☆194Updated this week
- Rapid comparison and dereplication of genomes☆351Jul 16, 2026Updated 3 weeks ago
- End-to-end encrypted email - Proton Mail • AdSpecial offer: 40% Off Yearly / 80% Off First Month. All Proton services are open source and independently audited for security.
- Fast Whole-Genome Similarity (ANI) Estimation☆477Dec 16, 2025Updated 7 months ago
- Fast and accurate tool for calculating Average Nucleotide Identity (ANI) and clustering virus genomes and metagenomes☆110Jul 7, 2026Updated last month
- Bifrost graph gene caller.☆99Jun 18, 2026Updated last month
- k-mers and the like☆23Aug 2, 2026Updated last week
- Program to quickly and accurately assemble plasmids in hybrid and long-only sequenced bacterial isolates☆89Jul 7, 2026Updated last month
- A SIMD-accelerated library to compute random minimizers☆46Jul 7, 2026Updated last month
- Mumemto: multi-MUM and MEM finding across pangenomes☆134Jul 29, 2026Updated last week