Alternatives and similar repositories for LexicMap:

Users that are interested in LexicMap are comparing it to the libraries listed below

• rcedgar / usearch12
  Open-source usearch
  ☆107Updated 7 months ago
• DessimozLab / read2tree
  a tool for inferring species tree from sequencing reads
  ☆146Updated 2 months ago
• huangnengCSU / compleasm
  A genome completeness evaluation tool based on miniprot
  ☆190Updated 4 months ago
• bluenote-1577 / sylph
  ultrafast taxonomic profiling and genome querying for metagenomic samples by abundance-corrected minhash.
  ☆205Updated 3 weeks ago
• snayfach / MGV
  Supporting code for uncultivated gut virus manuscript
  ☆68Updated last year
• GaetanBenoitDev / metaMDBG
  MetaMDBG: a lightweight assembler for long and accurate metagenomics reads.
  ☆132Updated last month
• shenwei356 / perfect-bioinformatic-tools
  What should perfect bioinformatic tools be like?
  ☆106Updated 10 months ago
• rpetit3 / dragonflye
  Assemble bacterial isolate genomes from Nanopore reads
  ☆121Updated last week
• takaram / kofam_scan
  CLI tool to annotate genes with KOfam
  ☆73Updated last year
• eead-csic-compbio / get_homologues
  GET_HOMOLOGUES: a versatile software package for pan-genome analysis
  ☆111Updated 3 weeks ago
• bluenote-1577 / skani
  Fast, robust ANI and aligned fraction for (metagenomic) genomes and contigs.
  ☆180Updated 6 months ago
• thegenemyers / FASTGA
  Pairwise whole genome aligner
  ☆145Updated 2 weeks ago
• nf-core / funcscan
  (Meta-)genome screening for functional and natural product gene sequences
  ☆78Updated this week
• bhattlab / MGEfinder
  A toolbox for identifying mobile genetic element (MGE) insertions from short-read sequencing data of bacterial isolates.
  ☆114Updated last year
• rrwick / Polypolish
  a short-read polishing tool for long-read assemblies
  ☆151Updated 7 months ago
• robotoD / GenoVi
  GenoVi, an automated customizable circular genome visualizer for bacteria and archaea
  ☆86Updated last year
• gbouras13 / hybracter
  Automated long-read first bacterial genome assembly tool implemented in Snakemake using Snaketool.
  ☆113Updated last week
• epi2me-labs / wf-metagenomics
  Metagenomic classification of long-read sequencing data
  ☆72Updated last week
• PacificBiosciences / HiFi-16S-workflow
  Nextflow pipeline to analyze PacBio HiFi full-length 16S data
  ☆66Updated last month
• EBI-Metagenomics / emg-viral-pipeline
  VIRify: detection of phages and eukaryotic viruses from metagenomic and metatranscriptomic assemblies
  ☆128Updated this week
• nadegeguiglielmoni / genome_assembly_tools
  List of genome assembly tools
  ☆54Updated 3 weeks ago
• art-egorov / lovis4u
  Bioinformatics tool for Locus Visualisation
  ☆84Updated last week
• lh3 / pangene
  Constructing a pangenome gene graph
  ☆179Updated 6 months ago
• OpenGene / fastplong
  Ultra-fast preprocessing and quality control for long-read sequencing data
  ☆97Updated last month
• cruizperez / MicrobeAnnotator
  Pipeline for metabolic annotation of microbial genomes
  ☆142Updated 7 months ago
• soedinglab / metaeuk
  MetaEuk - sensitive, high-throughput gene discovery and annotation for large-scale eukaryotic metagenomics
  ☆180Updated 6 months ago
• ncbi / egapx
  Eukaryotic Genome Annotation Pipeline-External caller scripts and documentation
  ☆108Updated 3 weeks ago
• GenomiqueENS / toulligQC
  A post sequencing QC tool for Oxford Nanopore sequencers
  ☆92Updated 3 weeks ago
• genomicsITER / NanoCLUST
  NanoCLUST is an analysis pipeline for UMAP-based classification of amplicon-based full-length 16S rRNA nanopore reads
  ☆107Updated last year
• hahnlab / CAFE5
  Version 5 of the CAFE phylogenetics software
  ☆121Updated this week