shenwei356 / LexicMapLinks
LexicMap: efficient sequence alignment against millions of prokaryotic genomes
☆194Updated 2 weeks ago
Alternatives and similar repositories for LexicMap
Users that are interested in LexicMap are comparing it to the libraries listed below
Sorting:
- ultrafast taxonomic profiling and genome querying for metagenomic samples by abundance-corrected minhash.☆257Updated 2 weeks ago
- VIRify: detection of phages and eukaryotic viruses from metagenomic and metatranscriptomic assemblies☆144Updated last week
- Bioinformatics tool for Locus Visualisation☆125Updated 5 months ago
- a tool for inferring species tree from sequencing reads☆152Updated 3 weeks ago
- Open-source usearch☆120Updated 2 months ago
- MetaEuk - sensitive, high-throughput gene discovery and annotation for large-scale eukaryotic metagenomics☆198Updated 2 months ago
- Fast, robust ANI and aligned fraction for (metagenomic) genomes and contigs.☆225Updated 2 weeks ago
- GALBA is a pipeline for fully automated prediction of protein coding gene structures with AUGUSTUS in novel eukaryotic genomes for the sc…☆147Updated 9 months ago
- Download files from NCBI Entrez by accession☆129Updated last year
- Metagenomic classification of long-read sequencing data☆95Updated last month
- MetaMDBG: a lightweight assembler for long and accurate metagenomics reads.☆178Updated last month
- Pipeline for metabolic annotation of microbial genomes☆150Updated 7 months ago
- Supporting code for uncultivated gut virus manuscript☆75Updated 2 years ago
- Novelty-inclusive microbial (and now dsDNA phage) community profiling of shotgun metagenomes☆167Updated 3 weeks ago
- Bioinformatics program inStrain☆177Updated 5 months ago
- Processing pipeline for pan-genome visulization and exploration☆141Updated 2 years ago
- A toolbox for identifying mobile genetic element (MGE) insertions from short-read sequencing data of bacterial isolates.☆124Updated 2 years ago
- GenoVi, an automated customizable circular genome visualizer for bacteria and archaea☆98Updated 2 years ago
- Precise phylogenetic analysis of microbial isolates and genomes from metagenomes☆158Updated 4 months ago
- snipit: summarise snps relative to your reference sequence☆162Updated last month
- A python pipeline to identify IS (Insertion Sequence) elements in genome and metagenome☆99Updated 6 months ago
- Ultra-fast preprocessing and quality control for long-read sequencing data☆191Updated last month
- List of genome assembly tools☆80Updated 3 weeks ago
- Highly parallelised multi-taxonomic profiling of shotgun short- and long-read metagenomic data☆167Updated last week
- FunGAP: fungal Genome Annotation Pipeline☆111Updated 4 months ago
- Accurate metagenomic profiling && Fast large-scale sequence/genome searching☆201Updated 2 years ago
- Development version of Easyfig☆100Updated last year
- CLI tool to annotate genes with KOfam☆85Updated 2 years ago
- oxford dot plots☆158Updated 3 weeks ago
- ☆147Updated last year