Alternatives and similar repositories for LexicMap:

Users that are interested in LexicMap are comparing it to the libraries listed below

• DessimozLab / read2tree
  a tool for inferring species tree from sequencing reads
  ☆148Updated last month
• GaetanBenoitDev / metaMDBG
  MetaMDBG: a lightweight assembler for long and accurate metagenomics reads.
  ☆141Updated 3 months ago
• nadegeguiglielmoni / genome_assembly_tools
  List of genome assembly tools
  ☆63Updated this week
• huangnengCSU / compleasm
  A genome completeness evaluation tool based on miniprot
  ☆203Updated 3 weeks ago
• snayfach / MGV
  Supporting code for uncultivated gut virus manuscript
  ☆69Updated last year
• lh3 / pangene
  Constructing a pangenome gene graph
  ☆184Updated 8 months ago
• takaram / kofam_scan
  CLI tool to annotate genes with KOfam
  ☆78Updated last year
• bluenote-1577 / sylph
  ultrafast taxonomic profiling and genome querying for metagenomic samples by abundance-corrected minhash.
  ☆218Updated 3 weeks ago
• eead-csic-compbio / get_homologues
  GET_HOMOLOGUES: a versatile software package for pan-genome analysis
  ☆113Updated last month
• ncbi / fcs
  Foreign Contamination Screening caller scripts and documentation
  ☆129Updated 2 weeks ago
• hahnlab / CAFE5
  Version 5 of the CAFE phylogenetics software
  ☆130Updated last month
• neherlab / pangraph
  A bioinformatic toolkit to align genome assemblies into pangenome graphs
  ☆101Updated last week
• gbouras13 / hybracter
  Automated long-read first bacterial genome assembly tool implemented in Snakemake using Snaketool.
  ☆122Updated 3 weeks ago
• rrwick / Polypolish
  a short-read polishing tool for long-read assemblies
  ☆156Updated 9 months ago
• epi2me-labs / wf-metagenomics
  Metagenomic classification of long-read sequencing data
  ☆77Updated 2 weeks ago
• wwood / singlem
  Novelty-inclusive microbial community profiling of shotgun metagenomes
  ☆140Updated last week
• bluenote-1577 / skani
  Fast, robust ANI and aligned fraction for (metagenomic) genomes and contigs.
  ☆191Updated 8 months ago
• AdmiralenOla / Scoary
  Pan-genome wide association studies
  ☆191Updated 10 months ago
• cruizperez / MicrobeAnnotator
  Pipeline for metabolic annotation of microbial genomes
  ☆144Updated 2 weeks ago
• lskatz / mashtree
  Create a tree using Mash distances
  ☆160Updated last year
• EBI-Metagenomics / emg-viral-pipeline
  VIRify: detection of phages and eukaryotic viruses from metagenomic and metatranscriptomic assemblies
  ☆131Updated this week
• shenwei356 / perfect-bioinformatic-tools
  What should perfect bioinformatic tools be like?
  ☆114Updated last week
• soedinglab / metaeuk
  MetaEuk - sensitive, high-throughput gene discovery and annotation for large-scale eukaryotic metagenomics
  ☆181Updated 8 months ago
• thegenemyers / FASTGA
  Pairwise whole genome aligner
  ☆151Updated 2 weeks ago
• gatech-genemark / ProtHint
  Protein hint generation pipeline for gene finding in eukaryotic genomes
  ☆56Updated last year
• medvedevgroup / SibeliaZ
  A fast whole-genome aligner based on de Bruijn graphs
  ☆145Updated last month
• Mykrobe-tools / mykrobe
  Antibiotic resistance prediction in minutes
  ☆107Updated 4 months ago
• tseemann / any2fasta
  Convert various sequence formats to FASTA
  ☆133Updated 2 years ago
• tseemann / snp-dists
  Pairwise SNP distance matrix from a FASTA sequence alignment
  ☆133Updated last year
• nmquijada / tormes
  Making whole bacterial genome sequencing data analysis easy
  ☆103Updated 4 months ago