iqbal-lab-org / make_prgLinks
Code to create a PRG from a Multiple Sequence Alignment file
☆25Updated last month
Alternatives and similar repositories for make_prg
Users that are interested in make_prg are comparing it to the libraries listed below
Sorting:
- Colinear block visualisation tool☆31Updated last year
- Software that separates very close sequences that have been collapsed during assembly. Uses only long reads.☆35Updated 3 months ago
- Strain-level haplotyping for metagenomes with short or long-reads.☆52Updated 3 months ago
- base-accurate DNA sequence alignments using edlib and mashmap2☆33Updated 4 years ago
- reference-based long read assemblies of bacterial genomes☆50Updated 3 years ago
- ☆31Updated last year
- Differential k-mer analysis☆36Updated last year
- Alignment against all pre-2019 bacteria on laptops within a few hours (former MOF-Search)☆36Updated last year
- Find Unique genomic Regions☆30Updated last week
- Assembly based core genome SNP alignments for bacteria☆25Updated 5 years ago
- Genome size estimation from long read overlaps☆59Updated last week
- Indels are not ideal - quick test for interrupted ORFs in bacterial/microbial genomes☆15Updated 7 years ago
- Pangenome Sequence Naming: a backwards-compatible hack to simplify the identification of samples and haplotypes in pangenomes☆38Updated 9 months ago
- Automated strain separation of low-complexity metagenomes☆51Updated 3 years ago
- A mathematically characterized hypothesis test for organism presence/absence in a metagenome☆30Updated 2 months ago
- transposable element typing pipeline☆18Updated last year
- Haplotype-aware genome assembly toolkit☆29Updated 5 years ago
- Fast and space-efficient taxonomic classification of long reads☆43Updated 2 months ago
- ♥ Fast and Accurate Estimation of Evolutionary Distances☆29Updated 3 months ago
- ♥ Efficient Estimation of Evolutionary Distances☆46Updated last year
- Quickly get coverage statistics given reads and an assembly☆13Updated last year
- Annotated Genome Optimization Using Transcriptome Information☆20Updated 5 years ago
- Fast long-read mapper and whole-genome aligner (accelerated version of minimap2)☆33Updated last month
- A C++ library and utilities for manipulating the Graphical Fragment Assembly format.☆55Updated 3 years ago
- Improved Phased Assembler☆28Updated 3 years ago
- Remove human reads from a sequencing run☆40Updated last week
- Pan-Genomic Matching Statistics☆53Updated last year
- extract MSAs from genome variation graphs☆33Updated 4 years ago
- Fast and scalable nanopore adaptive sampling☆34Updated 2 years ago
- Correcting errors in noisy long reads using variation graphs☆51Updated 2 years ago