Code to create a PRG from a Multiple Sequence Alignment file
☆25Sep 10, 2025Updated 5 months ago
Alternatives and similar repositories for make_prg
Users that are interested in make_prg are comparing it to the libraries listed below
Sorting:
- Pan-genome inference and genotyping with long noisy or short accurate reads☆119Dec 13, 2024Updated last year
- PanPA is a tool for building panproteome graphs and aligning sequences back to the graphs.☆18Updated this week
- dEploid is designed for deconvoluting mixed genomes with unknown proportions. Traditional ‘phasing’ programs are limited to diploid organ…☆21Jan 20, 2025Updated last year
- Embedding-based indexing for compact storage and rapid querying of bacterial pan-genomes☆21Dec 9, 2025Updated 2 months ago
- Robust individual and aggregate checksums for nucleotide sequences☆17Updated this week
- Classify sequencing reads using MinHash.☆48Apr 6, 2020Updated 5 years ago
- convert variation graph alignments to coverage maps over nodes☆27Jan 21, 2026Updated last month
- Ruby library for handling GFA files☆17Jul 10, 2025Updated 7 months ago
- A utility for splitting mixed origin NGS reads☆10Jun 1, 2021Updated 4 years ago
- Efficient indexing and querying of annotations in a pangenome graph☆10Oct 29, 2025Updated 4 months ago
- ☆10Feb 23, 2024Updated 2 years ago
- Identifying large scale inversions between two genomes by mapping genome 1's unique kmers onto genome 2.☆10Jun 6, 2025Updated 8 months ago
- A Rust library providing fully dynamic sets of k-mers with high locality☆47Feb 12, 2026Updated 2 weeks ago
- PopPUNK 👨🎤 (POPulation Partitioning Using Nucleotide Kmers)☆104Feb 9, 2026Updated 3 weeks ago
- Genome inference from a population reference graph☆96Apr 1, 2025Updated 11 months ago
- Wavefront alignment algorithm (WFA) in Golang