iqbal-lab-org / make_prgLinks
Code to create a PRG from a Multiple Sequence Alignment file
☆25Updated 4 months ago
Alternatives and similar repositories for make_prg
Users that are interested in make_prg are comparing it to the libraries listed below
Sorting:
- Differential k-mer analysis☆39Updated last year
- base-accurate DNA sequence alignments using edlib and mashmap2☆32Updated 4 years ago
- Software that separates very close sequences that have been collapsed during assembly. Uses only long reads.☆35Updated 8 months ago
- Alignment against all pre-2019 bacteria on laptops within a few hours (former MOF-Search)☆39Updated last year
- reference-based long read assemblies of bacterial genomes☆50Updated 4 years ago
- Indels are not ideal - quick test for interrupted ORFs in bacterial/microbial genomes☆15Updated 7 years ago
- Colinear block visualisation tool☆31Updated 2 years ago
- ☆30Updated 2 years ago
- Genomic neighbor typing of bacterial pathogens using MinHash☆42Updated 3 years ago
- Pangenome Sequence Naming: a backwards-compatible hack to simplify the identification of samples and haplotypes in pangenomes☆44Updated last year
- Strain-level haplotyping for metagenomes with short or long-reads.☆63Updated 9 months ago
- Haplotype-aware genome assembly toolkit☆30Updated 6 years ago
- Improved Phased Assembler☆28Updated 3 years ago
- ☆28Updated last year
- Assembly based core genome SNP alignments for bacteria☆25Updated 6 years ago
- Sequence-independent identification and removal of adapters/systemic contamination in shotgun sequencing data. https://doi.org/10.1093/bi…☆18Updated 2 years ago
- Automated strain separation of low-complexity metagenomes☆52Updated 4 years ago
- Correcting errors in noisy long reads using variation graphs☆50Updated 3 years ago
- Fast and space-efficient taxonomic classification of long reads☆43Updated 4 months ago
- ♥ Fast and Accurate Estimation of Evolutionary Distances☆29Updated 9 months ago
- Panache is a web-based interface designed for the visualization of linearized pangenomes. It can be used to show presence/absence informa…☆46Updated 2 years ago
- GFAffix identifies walk-preserving shared affixes in variation graphs and collapses them into a non-redundant graph structure.☆36Updated 7 months ago
- extract MSAs from genome variation graphs☆34Updated 5 years ago
- CAMSA: a tool for Comparative Analysis and Merging of Scaffold Assemblies☆24Updated 5 years ago
- Fast and scalable nanopore adaptive sampling☆34Updated 2 years ago
- Scaffolding with Ultralong Reads☆15Updated 5 years ago
- A mathematically characterized hypothesis test for organism presence/absence in a metagenome☆34Updated last week
- transposable element typing pipeline☆19Updated last year
- Fast and accurate tool for estimating genomic distances between genome-skims☆47Updated 2 years ago
- Mandrake 🌿/👨🔬🦆 – Fast visualisation of the population structure of pathogens using Stochastic Cluster Embedding☆39Updated 10 months ago