RabbitTClust: enabling fast clustering analysis of millions bacteria genomes with MinHash sketches
☆54Aug 21, 2026Updated last month
Alternatives and similar repositories for RabbitTClust
Users that are interested in RabbitTClust are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- RabbitKSSD: accelerating genome distance estimation on modern multi-core architectures☆12Jun 5, 2024Updated 2 years ago
- An Fast variant calling tool to detection germline and somatic variants☆12Feb 21, 2026Updated 7 months ago
- Finding regions of similarity between plasmids☆17Jul 15, 2026Updated 2 months ago
- Visualize microbial evolution at the SNP level!☆18Aug 12, 2025Updated last year
- PyO3 bindings and Python interface to skani, a method for fast genomic identity calculation using sparse chaining.☆29Aug 20, 2025Updated last year
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- tool to determine optimal refrerence genome given a set of fasta files☆15May 18, 2023Updated 3 years ago
- alignment-free coverage calculation for metagenomic binning >100 times faster☆58May 8, 2026Updated 5 months ago
- software to identify primers that can distinguish genomes☆20Aug 31, 2026Updated last month
- skDER & CiDDER: efficient & high-resolution dereplication of microbial genomes.☆64Sep 1, 2026Updated last month
- A more efficient quality control tool for sequencing data☆33May 27, 2025Updated last year
- Fast and space-efficient taxonomic classification of long reads☆46Jul 16, 2026Updated 2 months ago
- Bifrost graph gene caller.☆102Aug 31, 2026Updated last month
- StrainXpress is a de novo assembly method which base on overlap-layout-consensus (OLC) paradigm and can fast and accurately assemble high…☆13Mar 7, 2024Updated 2 years ago
- Reorients assembled microbial sequences☆145Jun 30, 2026Updated 3 months ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Targeted Detection and Reconstruction of Plasmids☆22May 7, 2024Updated 2 years ago
- Metagenomic Intra-Species Diversity Analysis (MIDAS)☆44Sep 3, 2024Updated 2 years ago
- A Python implementation of the OrthoANI algorithm for nucleotide identity measurement.☆37Jul 21, 2025Updated last year
- Order and orientation of complete bacterial genomes☆29Jun 30, 2026Updated 3 months ago
- ☆30Aug 2, 2026Updated 2 months ago
- Embedding-based indexing for compact storage and rapid querying of bacterial pan-genomes☆24Sep 27, 2026Updated last week
- A simple script to run an alignment with nucmer and visualise its results.☆10Apr 17, 2023Updated 3 years ago
- All The Bacteria CLI — query 3.2M bacterial genomes (AMR, MLST, assemblies, metadata) from the terminal☆37Sep 2, 2026Updated last month
- Microbial agile accurate SNP Typer☆30Dec 27, 2023Updated 2 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- LexicMap: efficient sequence alignment against millions of prokaryotic genomes☆226Updated this week
- A taxonomic classifier of plasmids☆29Jul 7, 2021Updated 5 years ago
- A k-mer based program for the identification of known plasmids from whole-genome sequencing reads☆36Feb 3, 2021Updated 5 years ago
- Strain-level haplotyping for metagenomes with short or long-reads.☆71Apr 10, 2025Updated last year
- Find clustered hits from a BLAST search☆150Aug 6, 2026Updated 2 months ago
- Split k-mer analysis – version 2☆106Updated this week
- Microbial Genome Circular plotting tool for comparative genomics using Circos☆38Feb 1, 2023Updated 3 years ago
- Dryad is a Nextflow pipeline for examining prokaryote relatedness. Dryad can perform a reference free analysis and/or SNP analysis.☆21Updated this week
- Clustering tool optimized for sparse distance matrices: ~16M elements with ~190M connections clustered in minutes.☆16Sep 12, 2026Updated 3 weeks ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- ultrafast taxonomic profiling and genome querying for metagenomic samples by abundance-corrected minhash.☆325Updated this week
- Rapid determination of appropriate reference genomes.☆103Jan 22, 2025Updated last year
- A tooL for Prokaryotic Phylogeny And Clustering Analysis☆14Aug 5, 2026Updated 2 months ago
- whole genome MLST analysis☆57Jun 17, 2026Updated 3 months ago
- genome_updater is a bash script that downloads and updates (non-redundant) snapshots of the NCBI Genomes repository (RefSeq/GenBank) with…☆175Updated this week
- Chimera: A Versatile Metagenomic Classification Tool☆21Aug 16, 2026Updated last month
- Rapid & standardized annotation of bacterial genomes, MAGs & plasmids☆683Aug 7, 2026Updated 2 months ago