RabbitTClust: enabling fast clustering analysis of millions bacteria genomes with MinHash sketches
☆54Aug 21, 2026Updated 3 weeks ago
Alternatives and similar repositories for RabbitTClust
Users that are interested in RabbitTClust are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- RabbitKSSD: accelerating genome distance estimation on modern multi-core architectures☆12Jun 5, 2024Updated 2 years ago
- An Fast variant calling tool to detection germline and somatic variants☆12Feb 21, 2026Updated 6 months ago
- Finding regions of similarity between plasmids☆17Jul 15, 2026Updated 2 months ago
- Visualize microbial evolution at the SNP level!☆17Aug 12, 2025Updated last year
- PyO3 bindings and Python interface to skani, a method for fast genomic identity calculation using sparse chaining.☆29Aug 20, 2025Updated last year
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- tool to determine optimal refrerence genome given a set of fasta files☆15May 18, 2023Updated 3 years ago
- alignment-free coverage calculation for metagenomic binning >100 times faster☆57May 8, 2026Updated 4 months ago
- software to identify primers that can distinguish genomes☆20Aug 31, 2026Updated 2 weeks ago
- skDER & CiDDER: efficient & high-resolution dereplication of microbial genomes.☆64Sep 1, 2026Updated 2 weeks ago
- A more efficient quality control tool for sequencing data☆33May 27, 2025Updated last year
- Fast and space-efficient taxonomic classification of long reads☆46Jul 16, 2026Updated 2 months ago
- Bifrost graph gene caller.☆101Aug 31, 2026Updated 2 weeks ago
- StrainXpress is a de novo assembly method which base on overlap-layout-consensus (OLC) paradigm and can fast and accurately assemble high…☆13Mar 7, 2024Updated 2 years ago
- Reorients assembled microbial sequences☆146Jun 30, 2026Updated 2 months ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- Targeted Detection and Reconstruction of Plasmids☆22May 7, 2024Updated 2 years ago
- Metagenomic Intra-Species Diversity Analysis (MIDAS)☆45Sep 3, 2024Updated 2 years ago
- A Python implementation of the OrthoANI algorithm for nucleotide identity measurement.☆37Jul 21, 2025Updated last year
- Order and orientation of complete bacterial genomes☆29Jun 30, 2026Updated 2 months ago
- ☆30Aug 2, 2026Updated last month
- Embedding-based indexing for compact storage and rapid querying of bacterial pan-genomes☆24Jul 11, 2026Updated 2 months ago
- A simple script to run an alignment with nucmer and visualise its results.☆10Apr 17, 2023Updated 3 years ago
- All The Bacteria CLI — query 3.2M bacterial genomes (AMR, MLST, assemblies, metadata) from the terminal☆35Sep 2, 2026Updated 2 weeks ago
- Microbial agile accurate SNP Typer☆30Dec 27, 2023Updated 2 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- LexicMap: efficient sequence alignment against millions of prokaryotic genomes☆227Updated this week
- A taxonomic classifier of plasmids☆29Jul 7, 2021Updated 5 years ago
- A k-mer based program for the identification of known plasmids from whole-genome sequencing reads☆36Feb 3, 2021Updated 5 years ago
- Strain-level haplotyping for metagenomes with short or long-reads.☆72Apr 10, 2025Updated last year
- Find clustered hits from a BLAST search☆150Aug 6, 2026Updated last month
- Split k-mer analysis – version 2☆106Jul 9, 2026Updated 2 months ago
- Microbial Genome Circular plotting tool for comparative genomics using Circos☆39Feb 1, 2023Updated 3 years ago
- Dryad is a Nextflow pipeline for examining prokaryote relatedness. Dryad can perform a reference free analysis and/or SNP analysis.☆21Sep 8, 2026Updated last week
- Clustering tool optimized for sparse distance matrices: ~16M elements with ~190M connections clustered in minutes.☆16Sep 12, 2026Updated last week
- Open source password manager - Proton Pass • AdSecurely store, share, and autofill your credentials with Proton Pass, the end-to-end encrypted password manager trusted by millions.
- ultrafast taxonomic profiling and genome querying for metagenomic samples by abundance-corrected minhash.☆321Updated this week
- Rapid determination of appropriate reference genomes.☆104Jan 22, 2025Updated last year
- A tooL for Prokaryotic Phylogeny And Clustering Analysis☆14Aug 5, 2026Updated last month
- whole genome MLST analysis☆56Jun 17, 2026Updated 3 months ago
- genome_updater is a bash script that downloads and updates (non-redundant) snapshots of the NCBI Genomes repository (RefSeq/GenBank) with…☆176Sep 10, 2026Updated last week
- Chimera: A Versatile Metagenomic Classification Tool☆21Aug 16, 2026Updated last month
- Rapid & standardized annotation of bacterial genomes, MAGs & plasmids