RabbitBio / RabbitTClust
RabbitTClust: enabling fast clustering analysis of millions bacteria genomes with MinHash sketches
☆44Updated 10 months ago
Alternatives and similar repositories for RabbitTClust:
Users that are interested in RabbitTClust are comparing it to the libraries listed below
- Strain-level haplotyping for metagenomes with short or long-reads.☆50Updated last week
- Fast and space-efficient taxonomic classification of long reads☆43Updated last month
- Bacterial GWAS analysis☆39Updated last week
- Comparison pipeline for Prokaryote Protein Coding Gene Predictors☆23Updated 11 months ago
- skDER & CiDDER: efficient & high-resolution dereplication of microbial genomes.☆44Updated last month
- A Python implementation of the OrthoANI algorithm for nucleotide identity measurement.☆25Updated last month
- Automated strain separation of low-complexity metagenomes☆51Updated 3 years ago
- Standalone Python re-implementation of the POLCA polisher from MaSuRCA☆34Updated 3 weeks ago
- Genome size estimation from long read overlaps☆52Updated this week
- a tool to filter sites in a FASTA-format whole-genome pseudo-alignment☆59Updated last month
- Rapid and simple taxonomic profiling of genome and metagenome contigs☆28Updated last year
- Melon: metagenomic long-read-based taxonomic identification and quantification using marker genes☆33Updated last month
- Fast pairwise transmission inference from single genome and/or metagenomic data☆21Updated 6 months ago
- EzAAI - High Throughput Prokaryotic AAI Calculator☆39Updated 6 months ago
- SCAPP is a plasmid assembly tool. This tool is described in our paper: https://microbiomejournal.biomedcentral.com/articles/10.1186/s4016…☆31Updated 2 years ago
- Jaeger is a quick and precise tool for detecting phages in sequence assemblies.☆29Updated this week
- viralFlye pipeline☆18Updated 8 months ago
- Microbial agile accurate SNP Typer☆29Updated last year
- Core ELEment Bias Removal In Metagenome Binned ORthologs: A pipeline to make pangenomes from MAGs☆23Updated 8 months ago
- Genomewide Epistasis Analysis on Bacteria☆14Updated 7 months ago
- RCandy: an R package for visualising homologous recombination events in bacterial genomes☆21Updated 2 years ago
- Unified Human Gut Virome Catalog☆28Updated 8 months ago
- Genomic sequence aligner☆23Updated 3 weeks ago
- PlasX, a machine learning classifier for identifying plasmid sequences based on genetic architecture☆33Updated 3 years ago
- Identify phage regions in bacterial genomes for masking purposes☆30Updated 5 years ago
- Nanomotif - a tool for identifying methylated motifs in metagenomic samples☆25Updated last week
- A k-mer based program for the identification of known plasmids from whole-genome sequencing reads☆35Updated 4 years ago
- Prophage Activity Estimator☆26Updated 10 months ago
- A comprehensive bacterial core gene-set annotation pipeline based on Roary and pairwise ILPs☆27Updated 5 months ago
- A surveillance-oriented tool to strengthen the linkage between pathogen genetic clusters and epidemiological data☆32Updated 4 months ago