Alternatives and similar repositories for viratax

Users that are interested in viratax are comparing it to the libraries listed below

• brianli314 / palindrome-finder
  A bioinformatics tool written in Rust to find palindromic sequences in DNA
  ☆38Updated 4 months ago
• dwpeng / filterx
  process any file in tabular format. Fasta/fastq/GTF/GFF/VCF/SAM/BED
  ☆21Updated 4 months ago
• AllTheBacteria / Phylign
  Map query sequences to the assemblies of all pre-June 2023 bacteria (https://ftp.ebi.ac.uk/pub/databases/AllTheBacteria/Releases/0.2/) on…
  ☆12Updated last year
• lrobidou / KFC
  ☆19Updated 11 months ago
• JMencius / LongBow
  Basecalling configuration prediction through FASTQ files
  ☆32Updated last month
• kangxiongbin / HyLight
  HyLight is a strain aware de novo assembly method based on the overlap-layout-consensus (OLC) paradigm that leverages the strengths of NG…
  ☆12Updated last year
• ICTV-VBEG / ICTV-TaxonomyChallenge
  ☆17Updated last year
• dr-joe-wirth / primerForge
  software to identify primers that can distinguish genomes
  ☆20Updated 3 weeks ago
• lskatz / adapterseqs
  A repo with just adapter sequences
  ☆15Updated 6 months ago
• robertaboukhalil / alignment-sandbox
  Tool for exploring sequence alignment algorithms
  ☆13Updated last year
• althonos / pyskani
  PyO3 bindings and Python interface to skani, a method for fast genomic identity calculation using sparse chaining.
  ☆28Updated 4 months ago
• refresh-bio / clusty
  ☆14Updated 7 months ago
• StephenHwang / MEMO
  MEMO: MEM-based pangenome indexing for k-mer queries
  ☆20Updated last year
• iqbal-lab-org / cobs
  COBS - Compact Bit-Sliced Signature Index (for Genomic k-Mer Data or q-Grams)
  ☆20Updated last year
• bede / seqsum
  Robust individual and aggregate checksums for nucleotide sequences
  ☆17Updated 2 years ago
• lijuzeng / dna2bit
  ☆13Updated last year
• moold / kseq-rs
  A FASTA/FASTQ format parser library
  ☆20Updated last year
• uio-bmi / NucBreak
  Location of structural errors in a genome assembly and structural variations between a pair of genomes
  ☆11Updated 6 years ago
• martinghunt / ziplign
  Simple-to-use interactive comparison of two bacterial genomes
  ☆19Updated last month
• oxli-bio / oxli
  k-mers and the like
  ☆22Updated last week
• sourmash-bio / sourmash_plugin_branchwater
  fast, multithreaded sourmash operations: search, compare, and gather.
  ☆25Updated this week
• rrwick / Are-reads-required
  ☆10Updated 7 months ago
• algbio / SRFAligner
  ☆13Updated 3 weeks ago
• shenwei356 / wfa
  Wavefront alignment algorithm (WFA) in Golang
  ☆32Updated 5 months ago
• bacpop / sketchlib.rust
  Fast sequence distance estimates
  ☆26Updated last month
• LoadStar822 / Chimera
  Chimera: A Versatile Metagenomic Classification Tool
  ☆20Updated this week
• SegataLab / viromeqc
  ViromeQC is a computational tool to benchmark and quantify non-viral contamination in VLP-enrihed viromes. ViromeQC provides an enrichmen…
  ☆20Updated 3 years ago
• taxburst / taxburst
  sunburst plots for taxonomy - working to update Krona
  ☆43Updated 3 months ago
• LuoGroup2023 / PanTax
  PanTax: Strain-level metagenomic profiling using pangenome graphs
  ☆45Updated 2 weeks ago
• IndexThePlanet / LoganSearch
  A k-mer search engine for all Sequence Read Archive public accessions
  ☆36Updated last year