vsbuffalo / hgindexLinks
Hierarchical binned indexed data store for on-disk genomic data.
☆14Updated 7 months ago
Alternatives and similar repositories for hgindex
Users that are interested in hgindex are comparing it to the libraries listed below
Sorting:
- Robust individual and aggregate checksums for nucleotide sequences☆17Updated last year
- convert CHAIN format to PAF format☆14Updated 8 months ago
- A Go implementation of the strobemers (https://github.com/ksahlin/strobemers)☆15Updated 4 years ago
- A Rust library for storing generic genomic data by sorted chromosome name☆17Updated 11 months ago
- Given a set of kmers (fasta format) and a set of sequences (fasta format), this tool will extract the sequences containing the kmers.☆21Updated last year
- PAF (pairwise alignment format) validator based on extended CIGAR strings☆14Updated 2 weeks ago
- process any file in tabular format. Fasta/fastq/GTF/GFF/VCF/SAM/BED☆21Updated last week
- drunk on perbase pileups and lua expressions☆19Updated 3 months ago
- convert reads from repeated measures of same piece of DNA into spaced matricies for deep learners.☆14Updated 2 years ago
- A Rust library providing fully dynamic sets of k-mers with high locality☆45Updated 10 months ago
- Catalogue of pairwise alignment algorithms and benchmarks☆26Updated last year
- Simulate mutations in genomes☆15Updated 5 years ago
- A minimap2 implementation with binseq inputs☆16Updated last month
- Hidden Markov Model based Copy number caller☆20Updated 10 months ago
- Tool for exploring sequence alignment algorithms☆13Updated 11 months ago
- Contains the description of a file format to store kmers and associated values☆32Updated 3 years ago
- A bioinformatics tool written in Rust to find palindromic sequences in DNA☆35Updated 6 months ago
- syncmer graphs, and perhaps other sorts of sequence graphs☆21Updated 4 months ago
- VEP-like tool for sequence ontology and HGVS annotation of VCF files☆21Updated last week
- ClaMSA (Classify Multiple Sequence Alignments).☆13Updated 9 months ago
- A minimal copy fastq and fasta reader built for parallel support and paired end processing☆22Updated this week
- ProphAsm – a rapid computation of simplitigs directly from k-mer sets☆26Updated 2 years ago
- Iterate k-min-mers from a DNA sequence in Rust☆13Updated last year
- ☆22Updated 8 months ago
- A command line tool (in Kotlin/JVM) for intuitively visualizing BAM alignments. (Currently unmaintained)☆10Updated last year
- A FASTA/FASTQ format parser library☆20Updated last year
- Genome browser hub for the T2T genomes and resources☆23Updated 3 weeks ago
- k-mer similarity analysis pipeline☆22Updated last month
- Variant call adjudication☆16Updated last year
- ☆14Updated 4 years ago