Hierarchical binned indexed data store for on-disk genomic data.
☆13Jan 18, 2025Updated last year
Alternatives and similar repositories for hgindex
Users that are interested in hgindex are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Fast sequence distance estimates☆30Updated this week
- PAF (pairwise alignment format) validator based on extended CIGAR strings☆15Aug 10, 2025Updated 10 months ago
- Contains the description of a file format to store kmers and associated values☆34Aug 17, 2022Updated 3 years ago
- A Rust library providing fully dynamic sets of k-mers with high locality☆47May 13, 2026Updated last month
- fast, multithreaded sourmash operations: search, compare, and gather.☆26Jun 29, 2026Updated last week
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- Taxonomy classification of viral sequences / contigs