vsbuffalo / hgindex
Hierarchical binned indexed data store for on-disk genomic data.
☆14Updated this week
Alternatives and similar repositories for hgindex:
Users that are interested in hgindex are comparing it to the libraries listed below
- Robust individual and aggregate checksums for nucleotide sequences☆16Updated last year
- A Rust library for storing generic genomic data by sorted chromosome name☆17Updated 3 months ago
- Given a set of kmers (fasta format) and a set of sequences (fasta format), this tool will extract the sequences containing the kmers.☆22Updated last year
- ☆22Updated last month
- Scalable and High Performance Variant Calling on Cluster Environments☆10Updated 2 years ago
- PAF (pairwise alignment format) validator based on extended CIGAR strings☆14Updated 4 months ago
- Hidden Markov Model based Copy number caller☆20Updated 2 months ago
- Next Index to Query Kmer Intersection☆16Updated last year
- Generate random test data for bioinformatics☆25Updated 7 months ago
- A FASTA/FASTQ format parser library☆20Updated 10 months ago
- Pipeline for analyzing (rare) mutations in metagenome-assembled genomes☆11Updated 4 months ago
- Iterate k-min-mers from a DNA sequence in Rust☆13Updated 9 months ago
- Coronavirus (SARS-Cov-2) sequencing analysis☆10Updated 3 years ago
- Dividing heterogeneous long-read sequencing into groups with de Bruijn graphs☆19Updated 2 months ago
- ClaMSA (Classify Multiple Sequence Alignments).☆11Updated last month
- HyGen: Compact and Efficient Genome Sketching using Hyperdimensional Vectors☆24Updated 4 months ago
- Wrapper over rust-htslib for building collections of BAM records for testing.☆11Updated last year
- Simulate mutations in genomes☆15Updated 4 years ago
- Shared k-mer content between two genomes☆17Updated last year
- convert CHAIN format to PAF format☆14Updated last month
- Index and query k-mer matrices in BGZF☆12Updated 6 years ago
- A bioinformatics tool written in Rust to find palindromic sequences in DNA☆34Updated 4 months ago
- convert reads from repeated measures of same piece of DNA into spaced matricies for deep learners.☆14Updated last year
- process any file in tabular format. Fasta/fastq/GTF/GFF/VCF/SAM/BED☆21Updated this week
- Variant call adjudication☆16Updated 7 months ago
- A lightweight library for working with PAF (Pairwise mApping Format) files☆31Updated 2 years ago
- Catalogue of pairwise alignment algorithms and benchmarks☆25Updated 5 months ago
- VEP-like tool for sequence ontology and HGVS annotation of VCF files☆16Updated this week
- ProphAsm – a rapid computation of simplitigs directly from k-mer sets☆26Updated last year
- The python binding for D4 format☆16Updated 3 years ago