JensUweUlrich / Taxor
Fast and space-efficient taxonomic classification of long reads
☆43Updated 3 weeks ago
Alternatives and similar repositories for Taxor:
Users that are interested in Taxor are comparing it to the libraries listed below
- Strain-level haplotyping for metagenomes with short or long-reads.☆50Updated 8 months ago
- Recombination-free trees☆57Updated last year
- a tool to filter sites in a FASTA-format whole-genome pseudo-alignment☆56Updated 2 weeks ago
- Automated strain separation of low-complexity metagenomes☆51Updated 3 years ago
- Rapid and simple taxonomic profiling of genome and metagenome contigs☆27Updated last year
- skDER & CiDDER: efficient & high-resolution dereplication of microbial genomes.☆44Updated 2 weeks ago
- reference-based long read assemblies of bacterial genomes☆47Updated 3 years ago
- Colinear block visualisation tool☆30Updated last year
- Melon: metagenomic long-read-based taxonomic identification and quantification using marker genes☆33Updated last month
- Bacterial GWAS analysis☆37Updated last week
- A surveillance-oriented tool to strengthen the linkage between pathogen genetic clusters and epidemiological data☆32Updated 3 months ago
- IslandPath standalone software☆31Updated last year
- Gene-flank analysis tool☆27Updated 3 months ago
- Fast pairwise transmission inference from single genome and/or metagenomic data☆19Updated 5 months ago
- A Python implementation of the OrthoANI algorithm for nucleotide identity measurement.☆25Updated last week
- Comparison pipeline for Prokaryote Protein Coding Gene Predictors☆23Updated 11 months ago
- Remove human reads from a sequencing run☆38Updated 5 months ago
- Genome size estimation from long read overlaps☆51Updated 3 months ago
- Get microbial sequence data easier and faster☆28Updated 5 years ago
- Plasmid analysis using rearrangement distances☆40Updated 4 months ago
- A comprehensive bacterial core gene-set annotation pipeline based on Roary and pairwise ILPs☆27Updated 5 months ago
- viralFlye pipeline☆18Updated 7 months ago
- Split Kmer Analysis☆62Updated 2 years ago
- Miscellaneous Perl scripts from 20 years in microbial bioinformatics☆17Updated 8 months ago
- A mathematically characterized hypothesis test for organism presence/absence in a metagenome☆30Updated this week
- Strain Resolution ON Graphs☆47Updated last year
- MAGScoT - a MAG scoring and refinement tool☆32Updated 5 months ago
- Microbial agile accurate SNP Typer☆29Updated last year
- A k-mer based program for the identification of known plasmids from whole-genome sequencing reads☆35Updated 4 years ago
- Predict MLST directly from uncorrected long reads☆27Updated 2 years ago