nluhmann / BlastFrost
☆45Updated 3 years ago
Alternatives and similar repositories for BlastFrost:
Users that are interested in BlastFrost are comparing it to the libraries listed below
- Correcting errors in noisy long reads using variation graphs☆51Updated 2 years ago
- Code to create a PRG from a Multiple Sequence Alignment file☆23Updated 10 months ago
- Colinear block visualisation tool☆30Updated last year
- Pangenome Sequence Naming: a backwards-compatible hack to simplify the identification of samples and haplotypes in pangenomes☆38Updated 4 months ago
- Haplotype-aware genome assembly toolkit☆29Updated 5 years ago
- Lightweight mosaic/somatic SV caller for long reads (WIP)☆29Updated 2 months ago
- Differential k-mer analysis☆34Updated last year
- Sequence-independent identification and removal of adapters/systemic contamination in shotgun sequencing data. https://doi.org/10.1093/bi…☆16Updated last year
- Find Unique genomic Regions☆29Updated last month
- fast, multithreaded sourmash operations: search, compare, and gather.☆21Updated this week
- Fast and scalable nanopore adaptive sampling☆33Updated last year
- Panache is a web-based interface designed for the visualization of linearized pangenomes. It can be used to show presence/absence informa…☆44Updated last year
- Improved Phased Assembler☆28Updated 2 years ago
- ☆17Updated 4 years ago
- ☆15Updated 4 years ago
- Detect and phase minor SNVs from long-read sequencing data☆14Updated 3 years ago
- Get microbial sequence data easier and faster☆28Updated 5 years ago
- Software that separates very close sequences that have been collapsed during assembly. Uses only long reads.☆34Updated 2 months ago
- Output FASTQ summary statistics in JSON format☆29Updated 2 years ago
- ☆21Updated 5 years ago
- Extracts subgraphs or components from a graph in GFA format☆23Updated 3 months ago
- Reference-free Binning of Metagenomics Long Reads using Coverage and Composition☆20Updated 5 months ago
- URMAP ultra-fast read mapper☆38Updated 4 years ago
- ☆41Updated 3 months ago
- Alignment against all pre-2019 bacteria on laptops within a few hours (former MOF-Search)☆27Updated 10 months ago
- PhyloCSF++ computes PhyloCSF tracks for whole-genome multiple sequence alignments, scores single MSA, annotates CDS features in GFF/GTF f…☆30Updated 3 years ago
- Comprehensive alignment, whole-genome coverage, and capture coverage statistics.☆19Updated 2 months ago
- ☆35Updated 5 years ago
- Genome assembly soft-masking using Red (REpeat Detector)☆16Updated 6 years ago
- A k-mer search engine for all Sequence Read Archive public accessions☆20Updated 3 months ago