nluhmann / BlastFrostLinks
☆45Updated 3 years ago
Alternatives and similar repositories for BlastFrost
Users that are interested in BlastFrost are comparing it to the libraries listed below
Sorting:
- Correcting errors in noisy long reads using variation graphs☆51Updated 2 years ago
- Colinear block visualisation tool☆31Updated last year
- ☆31Updated last year
- base-accurate DNA sequence alignments using edlib and mashmap2☆33Updated 4 years ago
- Genomic neighbor typing of bacterial pathogens using MinHash☆44Updated 2 years ago
- Alignment against all pre-2019 bacteria on laptops within a few hours (former MOF-Search)☆36Updated last year
- Code to create a PRG from a Multiple Sequence Alignment file☆25Updated last month
- Improved Phased Assembler☆28Updated 3 years ago
- Output FASTQ summary statistics in JSON format☆30Updated 2 years ago
- Strain-level haplotyping for metagenomes with short or long-reads.☆52Updated 3 months ago
- Fast and scalable nanopore adaptive sampling☆34Updated 2 years ago
- In-depth characterization and annotation of differences between two sets of DNA sequences☆61Updated 5 years ago
- Panache is a web-based interface designed for the visualization of linearized pangenomes. It can be used to show presence/absence informa…☆45Updated 2 years ago
- A mathematically characterized hypothesis test for organism presence/absence in a metagenome☆30Updated 2 months ago
- Assign genotypes to Salmonella Typhi genomes based on VCF files (mapped to Typhi CT18 reference genome)☆26Updated 3 weeks ago
- Software that separates very close sequences that have been collapsed during assembly. Uses only long reads.☆35Updated 3 months ago
- Fast and space-efficient taxonomic classification of long reads☆43Updated 3 months ago
- fast, multithreaded sourmash operations: search, compare, and gather.☆23Updated this week
- Automated strain separation of low-complexity metagenomes☆51Updated 3 years ago
- Haplotype-aware genome assembly toolkit☆29Updated 5 years ago
- ☆16Updated 5 years ago
- Differential k-mer analysis☆36Updated last year
- RabbitTClust: enabling fast clustering analysis of millions bacteria genomes with MinHash sketches☆46Updated last week
- Get microbial sequence data easier and faster☆28Updated 5 years ago
- MegaPath-Nano: Accurate Compositional Analysis and Drug-level Antimicrobial Resistance Detection Software for Oxford Nanopore Long-read M…☆15Updated 3 years ago
- URMAP ultra-fast read mapper☆39Updated 5 years ago
- Annotated Genome Optimization Using Transcriptome Information☆20Updated 5 years ago
- Genome size estimation from long read overlaps☆59Updated 2 weeks ago
- Fast long-read mapper and whole-genome aligner (accelerated version of minimap2)☆33Updated last month
- Linear-time de novo Long Read Assembler☆42Updated 6 months ago