nluhmann / BlastFrostLinks
☆44Updated 4 years ago
Alternatives and similar repositories for BlastFrost
Users that are interested in BlastFrost are comparing it to the libraries listed below
Sorting:
- Correcting errors in noisy long reads using variation graphs☆50Updated 3 years ago
- Genomic neighbor typing of bacterial pathogens using MinHash☆43Updated 2 years ago
- Strain-level haplotyping for metagenomes with short or long-reads.☆59Updated 8 months ago
- base-accurate DNA sequence alignments using edlib and mashmap2☆32Updated 4 years ago
- ☆30Updated 2 years ago
- Strain-level abundances estimation in metagenomic samples using variation graphs☆24Updated 2 years ago
- URMAP ultra-fast read mapper☆38Updated 5 years ago
- Pan-Genomic Matching Statistics☆54Updated last year
- Fast and space-efficient taxonomic classification of long reads☆43Updated 3 months ago
- Code to create a PRG from a Multiple Sequence Alignment file☆25Updated 3 months ago
- Fast and scalable nanopore adaptive sampling☆34Updated 2 years ago
- In-depth characterization and annotation of differences between two sets of DNA sequences☆63Updated 5 years ago
- kASA - k-Mer Analysis of Sequences based on Amino acid-like encoding☆23Updated 2 years ago
- Software that separates very close sequences that have been collapsed during assembly. Uses only long reads.☆35Updated 7 months ago
- Find Unique genomic Regions☆32Updated last month
- transposable element typing pipeline☆19Updated last year
- ☆45Updated 2 weeks ago
- Automated strain separation of low-complexity metagenomes☆53Updated 4 years ago
- fast, multithreaded sourmash operations: search, compare, and gather.☆25Updated last week
- Panache is a web-based interface designed for the visualization of linearized pangenomes. It can be used to show presence/absence informa…☆45Updated 2 years ago
- Assembler for raw de novo genome assembly of long uncorrected reads.☆36Updated 6 years ago
- Colinear block visualisation tool☆31Updated last year
- Alignment against all pre-2019 bacteria on laptops within a few hours (former MOF-Search)☆39Updated last year
- A k-mer search engine for all Sequence Read Archive public accessions☆35Updated last year
- Exact Tandem Repeat Finder (not a TRF replacement)☆50Updated 6 years ago
- A method of assessing sequence complexity based on kmer frequencies☆33Updated 7 years ago
- ♥ Fast and Accurate Estimation of Evolutionary Distances☆29Updated 7 months ago
- A mathematically characterized hypothesis test for organism presence/absence in a metagenome☆33Updated last week
- Remove contaminated contigs from genomes using k-mers and taxonomies.☆59Updated 2 years ago
- A tool for de novo clustering of long transcriptomic reads☆15Updated 3 years ago