Alternatives and similar repositories for viral-assembly

Users that are interested in viral-assembly are comparing it to the libraries listed below

• EvolBioInf / fur
  Find Unique genomic Regions
  ☆32Updated last month
• iqbal-lab / cortex
  reference free variant assembly
  ☆34Updated 2 years ago
• gwct / referee
  Reference genome quality scores
  ☆21Updated 4 years ago
• lh3 / sdust
  Symmetric DUST for finding low-complexity regions in DNA sequences
  ☆45Updated 4 months ago
• cvdelannoy / poreTally
  Benchmark MinION assembler pipelines and publish your results in a heartbeat!
  ☆15Updated 5 years ago
• pangenome / maffer
  extract MSAs from genome variation graphs
  ☆34Updated 5 years ago
• bcthomas / pullseq
  Utility program for extracting sequences from a fasta/fastq file
  ☆35Updated 11 months ago
• adigenova / fast-sg
  Fast-SG: An alignment-free algorithm for ultrafast scaffolding graph construction from short or long reads.
  ☆22Updated 7 years ago
• natir / fpa
  Filter of Pairwise Alignement
  ☆44Updated 3 years ago
• GlobalPathogenAnalysisService / read-it-and-keep
  Read contamination removal
  ☆25Updated last year
• bede / kindel
  Indel-aware consensus for aligned BAM
  ☆21Updated 3 months ago
• VGP / vgp-tools
  ☆28Updated 8 months ago
• bcgsc / physlr
  Construct a Physical Map from Linked Reads
  ☆18Updated last year
• pierrepeterlongo / kmer2sequences
  Given a set of kmers (fasta format) and a set of sequences (fasta format), this tool will extract the sequences containing the kmers.
  ☆21Updated 2 years ago
• phiweger / darkq
  A message queue for genomic surveillance
  ☆19Updated 4 years ago
• DrMicrobit / mira
  MIRA sequence assembler
  ☆30Updated 11 months ago
• brianli314 / palindrome-finder
  A bioinformatics tool written in Rust to find palindromic sequences in DNA
  ☆37Updated 3 months ago
• TGatter / LazyB
  Economic Genome Assembly from Low Coverage Illumina and Nanopore Data
  ☆19Updated 3 years ago
• linsalrob / genbank_to
  Convert genbank files to a swath of other formats
  ☆23Updated 2 years ago
• nluhmann / BlastFrost
  ☆44Updated 4 years ago
• hzi-bifo / Haploflow
  ☆30Updated 2 years ago
• edawson / rkmh
  Classify sequencing reads using MinHash.
  ☆48Updated 5 years ago
• mol-evol / panGPT
  A Generative Pre-Trained Transformer Package for Pangenomes
  ☆53Updated 6 months ago
• prophyle / prophyle
  Accurate, resource-frugal and deterministic DNA sequence classifier.
  ☆36Updated last week
• lbcb-sci / ra
  Assembler for raw de novo genome assembly of long uncorrected reads.
  ☆36Updated 6 years ago
• iqbal-lab-org / varifier
  Variant call verification
  ☆16Updated 6 months ago
• rcedgar / urmap
  URMAP ultra-fast read mapper
  ☆38Updated 5 years ago
• atifrahman / SWALO
  Scaffolding with assembly likelihood optimization
  ☆21Updated 4 years ago
• Maihj / AC-DIAMOND
  AC-DIAMOND is a DNA-protein alignment tool
  ☆16Updated 2 years ago
• cpockrandt / PhyloCSFpp
  PhyloCSF++ computes PhyloCSF tracks for whole-genome multiple sequence alignments, scores single MSA, annotates CDS features in GFF/GTF f…
  ☆30Updated 3 years ago