Alternatives and similar repositories for viral-assembly

Users that are interested in viral-assembly are comparing it to the libraries listed below

• EvolBioInf / fur
  Find Unique genomic Regions
  ☆30Updated 2 months ago
• TGatter / LazyB
  Economic Genome Assembly from Low Coverage Illumina and Nanopore Data
  ☆19Updated 3 years ago
• bcgsc / physlr
  Construct a Physical Map from Linked Reads
  ☆18Updated last year
• bcgsc / ntLink
  Minimizer-based assembly scaffolding and mapping using long reads
  ☆42Updated 8 months ago
• HaploConduct / HaploConduct
  Haplotype-aware genome assembly toolkit
  ☆29Updated 5 years ago
• atifrahman / SWALO
  Scaffolding with assembly likelihood optimization
  ☆22Updated 4 years ago
• hzi-bifo / Haploflow
  ☆31Updated last year
• pangenome / maffer
  extract MSAs from genome variation graphs
  ☆33Updated 4 years ago
• DrMicrobit / mira
  MIRA sequence assembler
  ☆29Updated 5 months ago
• lh3 / sdust
  Symmetric DUST for finding low-complexity regions in DNA sequences
  ☆42Updated last year
• bacpop / pp-sketchlib
  Library of sketching functions used by PopPUNK
  ☆31Updated 2 months ago
• richarddurbin / modimizer
  a toolset for fast DNA read set matching and assembly using a new type of reduced kmer
  ☆37Updated 3 years ago
• jltsiren / gbwtgraph
  GBWT-based handle graph
  ☆31Updated 3 months ago
• brianli314 / palindrome-finder
  A bioinformatics tool written in Rust to find palindromic sequences in DNA
  ☆35Updated 4 months ago
• VGP / vgp-tools
  ☆28Updated 2 months ago
• medvedevgroup / BubbZ
  ☆15Updated 4 years ago
• pierrepeterlongo / kmer2sequences
  Given a set of kmers (fasta format) and a set of sequences (fasta format), this tool will extract the sequences containing the kmers.
  ☆21Updated last year
• linsalrob / genbank_to
  Convert genbank files to a swath of other formats
  ☆18Updated last year
• rcedgar / urmap
  URMAP ultra-fast read mapper
  ☆39Updated 5 years ago
• HaploKit / vechat
  Correcting errors in noisy long reads using variation graphs
  ☆51Updated 2 years ago
• lbcb-sci / ra
  Assembler for raw de novo genome assembly of long uncorrected reads.
  ☆37Updated 5 years ago
• mbhall88 / pafpy
  A lightweight library for working with PAF (Pairwise mApping Format) files
  ☆31Updated 3 years ago
• GlobalPathogenAnalysisService / read-it-and-keep
  Read contamination removal
  ☆25Updated last year
• imgag / plasmIDent
  ☆15Updated 11 months ago
• natir / fpa
  Filter of Pairwise Alignement
  ☆44Updated 3 years ago
• mbhall88 / drprg
  Drug Resistance Prediction with Reference Graphs
  ☆21Updated last year
• at-cg / mm2-plus
  Fast long-read mapper and whole-genome aligner (accelerated version of minimap2)
  ☆33Updated this week
• fawaz-dabbaghieh / bubble_gun
  ☆41Updated 2 months ago
• PROBIC / mSWEEP
  mSWEEP High-resolution sweep metagenomics using fast probabilistic inference
  ☆14Updated 8 months ago
• RolandFaure / Hairsplitter
  Software that separates very close sequences that have been collapsed during assembly. Uses only long reads.
  ☆35Updated 2 months ago