Alternatives and similar repositories for ropebwt3

Users that are interested in ropebwt3 are comparing it to the libraries listed below

• refresh-bio / agc
  Assembled Genomes Compressor
  ☆168Updated 9 months ago
• yangao07 / longcallD
  A local-haplotagging-based small and structural variant caller
  ☆80Updated 2 weeks ago
• ksahlin / strobemers
  A repository for generating strobemers and evalaution
  ☆78Updated last year
• lbcb-sci / graphmap2
  GraphMap - A highly sensitive and accurate mapper for long, error-prone reads http://www.nature.com/ncomms/2016/160415/ncomms11307/full/n…
  ☆68Updated 3 years ago
• mourisl / centrifuger
  Taxonomic classifier for sequencing reads (bulk and single-cell data, short and long read) using FM-index with run-block compressed BWT.
  ☆65Updated last week
• seryrzu / unialigner
  ☆66Updated last year
• GeneDx / pgr-tk
  ☆100Updated last year
• ksahlin / strobealign
  Aligns short reads using dynamic seed size with strobemers
  ☆175Updated last week
• ekimb / mapquik
  Efficient low-divergence mapping of long reads in minimizer space
  ☆66Updated last year
• oma219 / spumoni
  Pan-Genomic Matching Statistics
  ☆53Updated last year
• DecodeGenetics / Ratatosk
  Hybrid error correction of long reads using colored de Bruijn graphs
  ☆104Updated 2 weeks ago
• TimD1 / vcfdist
  vcfdist: Accurately benchmarking phased variant calls
  ☆83Updated last month
• refresh-bio / kmer-db
  Kmer-db is a fast and memory-efficient tool for large-scale k-mer analyses (indexing, querying, estimating evolutionary relationships, et…
  ☆93Updated 3 months ago
• ogotoh / spaln
  Genome mapping and spliced alignment of cDNA or amino acid sequences
  ☆105Updated 3 months ago
• shenwei356 / unikmer
  A versatile toolkit for k-mers with taxonomic information
  ☆79Updated 2 weeks ago
• kjenike / panagram
  ☆66Updated 2 weeks ago
• vikshiv / mumemto
  Mumemto: multi-MUM and MEM finding across pangenomes
  ☆111Updated 2 months ago
• PacificBiosciences / sawfish
  Joint structural variant and copy number variant caller for HiFi sequencing data
  ☆60Updated last week
• lh3 / unimap
  A EXPERIMENTAL fork of minimap2 optimized for assembly-to-reference alignment
  ☆87Updated 4 years ago
• lh3 / minipileup
  Simple pileup-based variant caller
  ☆91Updated 4 months ago
• alignoth / alignoth
  Creating alignment plots from bam files
  ☆65Updated this week
• tobiasrausch / wally
  Wally: Visualization of aligned sequencing reads and contigs
  ☆117Updated 5 months ago
• lh3 / longdust
  Identify long STRs, VNTRs, satellite DNA and other low-complexity regions in a genome
  ☆61Updated last week
• hasindu2008 / squigulator
  a tool for simulating nanopore raw signal data
  ☆68Updated 3 weeks ago
• Kirk3gaard / 2023-basecalling-benchmarks
  ☆30Updated last year
• dnbaker / dashing2
  Dashing 2 is a fast toolkit for k-mer and minimizer encoding, sketching, comparison, and indexing.
  ☆66Updated last year
• brentp / vcfexpress
  expressions on VCFs
  ☆85Updated 4 months ago
• smarco / BiWFA-paper
  Bidirectional WFA (Paper)
  ☆47Updated last year
• milkschen / leviosam2
  Fast and accurate coordinate conversion between assemblies
  ☆115Updated this week
• sirselim / guppy_parameter_optimiser
  A small bash script that automates sweeping Guppy parameters in an attempt to optimise basecalling rate
  ☆30Updated 3 years ago