lh3 / ropebwt3Links
BWT construction and search
☆122Updated this week
Alternatives and similar repositories for ropebwt3
Users that are interested in ropebwt3 are comparing it to the libraries listed below
Sorting:
- Assembled Genomes Compressor☆175Updated last year
- A local-haplotagging-based small and structural variant caller☆89Updated 3 weeks ago
- A repository for generating strobemers and evalaution☆79Updated last year
- Aligns short reads using dynamic seed size with strobemers☆185Updated this week
- vcfdist: Accurately benchmarking phased variant calls☆84Updated 2 months ago
- ☆101Updated last year
- Pan-Genomic Matching Statistics☆54Updated last year
- Hybrid error correction of long reads using colored de Bruijn graphs☆106Updated 3 months ago
- Taxonomic classifier for sequencing reads (bulk and single-cell data, short and long read) using FM-index with run-block compressed BWT.☆78Updated last week
- Genome mapping and spliced alignment of cDNA or amino acid sequences☆107Updated 6 months ago
- alignment to variation graph inducer☆152Updated this week
- Mumemto: multi-MUM and MEM finding across pangenomes☆124Updated last month
- ☆67Updated last year
- Estimating k-mer coverage histogram of genomics data☆76Updated 2 years ago
- Kmer-db is a fast and memory-efficient tool for large-scale k-mer analyses (indexing, querying, estimating evolutionary relationships, et…☆96Updated 6 months ago
- GraphMap - A highly sensitive and accurate mapper for long, error-prone reads http://www.nature.com/ncomms/2016/160415/ncomms11307/full/n…☆69Updated 3 years ago
- Banded Striped DNA Sequence Alignment☆49Updated 2 years ago
- A versatile toolkit for k-mers with taxonomic information☆81Updated 3 months ago
- Split k-mer analysis – version 2☆101Updated 2 months ago
- abPOA: an SIMD-based C library for fast partial order alignment using adaptive band☆134Updated last month
- A EXPERIMENTAL fork of minimap2 optimized for assembly-to-reference alignment☆87Updated 4 years ago
- Efficient low-divergence mapping of long reads in minimizer space☆69Updated 2 years ago
- k-mer learning materials☆80Updated 9 months ago
- Wally: Visualization of aligned sequencing reads and contigs☆120Updated 2 months ago
- Creating alignment plots from bam files☆69Updated 3 weeks ago
- Bidirectional WFA (Paper)☆48Updated last year
- A versatile pairwise aligner for genomic and spliced nucleotide sequences☆56Updated last year
- ☆30Updated last year
- Gfapy: a flexible and extensible software library for handling sequence graphs in Python☆71Updated last month
- ☆68Updated last month