lh3 / ropebwt3Links
BWT construction and search
☆124Updated last week
Alternatives and similar repositories for ropebwt3
Users that are interested in ropebwt3 are comparing it to the libraries listed below
Sorting:
- Assembled Genomes Compressor☆175Updated last year
- A local-haplotagging-based small and structural variant caller☆90Updated 3 weeks ago
- A repository for generating strobemers and evalaution☆79Updated last year
- ☆101Updated last year
- Taxonomic classifier for sequencing reads (bulk and single-cell data, short and long read) using FM-index with run-block compressed BWT.☆81Updated this week
- Pan-Genomic Matching Statistics☆55Updated last year
- vcfdist: Accurately benchmarking phased variant calls☆85Updated 3 months ago
- Hybrid error correction of long reads using colored de Bruijn graphs☆106Updated 4 months ago
- Efficient low-divergence mapping of long reads in minimizer space☆70Updated 2 years ago
- ☆68Updated 2 weeks ago
- Kmer-db is a fast and memory-efficient tool for large-scale k-mer analyses (indexing, querying, estimating evolutionary relationships, et…☆96Updated 7 months ago
- Wally: Visualization of aligned sequencing reads and contigs☆120Updated 2 months ago
- A versatile pairwise aligner for genomic and spliced nucleotide sequences☆56Updated last year
- k-mer learning materials☆82Updated 10 months ago
- Aligns short reads using dynamic seed size with strobemers☆189Updated 2 weeks ago
- Mumemto: multi-MUM and MEM finding across pangenomes☆126Updated 3 weeks ago
- Estimating k-mer coverage histogram of genomics data☆77Updated 2 years ago
- GraphMap - A highly sensitive and accurate mapper for long, error-prone reads http://www.nature.com/ncomms/2016/160415/ncomms11307/full/n…☆70Updated 3 years ago
- A small bash script that automates sweeping Guppy parameters in an attempt to optimise basecalling rate☆30Updated 3 years ago
- GUI for inspecting POD5 files☆34Updated last year
- Split k-mer analysis – version 2☆103Updated 2 weeks ago
- abPOA: an SIMD-based C library for fast partial order alignment using adaptive band☆134Updated 2 months ago
- Creating alignment plots from bam files☆81Updated last week
- expressions on VCFs☆88Updated 8 months ago
- GenMap - Fast and Exact Computation of Genome Mappability☆113Updated last year
- Genome mapping and spliced alignment of cDNA or amino acid sequences☆108Updated 7 months ago
- ☆30Updated 2 years ago
- Fast and accurate coordinate conversion between assemblies☆117Updated 2 months ago
- flopp is a software package for single individual haplotype phasing of polyploid organisms from long read sequencing.☆37Updated 2 years ago
- Simple pileup-based variant caller☆95Updated 8 months ago