sstadick / perbaseLinks
Per-base per-nucleotide depth analysis
☆133Updated 2 weeks ago
Alternatives and similar repositories for perbase
Users that are interested in perbase are comparing it to the libraries listed below
Sorting:
- long read RNA-seq quantification☆87Updated 2 weeks ago
- using all the bits for echt rapid variant annotation and filtering☆153Updated 3 months ago
- igv.js standalone page generator and automatic configuration to view bam/cram/vcf/bed. "working in under 1 minute"☆127Updated 2 years ago
- Grep for FASTQ files☆98Updated 3 months ago
- an API for intersections of genomic data☆75Updated 3 weeks ago
- Fast and accurate coordinate conversion between assemblies☆113Updated 3 months ago
- Wally: Visualization of aligned sequencing reads and contigs☆118Updated 3 months ago
- Toolkit for calling structural variants using short or long reads☆106Updated last month
- A *fast* tool for BAM/CRAM quality evaluation, intended for long reads☆155Updated last month
- A simple toolset for BED files (warning: CLI may change before bedtk becomes stable)☆140Updated last month
- Tools for fiberseq data written in rust.☆52Updated last week
- Tools to annotate genomes using long read transcriptomics data☆45Updated 4 years ago
- BAM Statistics, Feature Counting and Annotation☆150Updated 3 weeks ago
- Variant calling tool for long-read sequencing data☆110Updated 3 months ago
- Scallop is a reference-based transcriptome assembler for RNA-seq☆92Updated 4 years ago
- reference-free transcriptome assembly for short and long reads☆108Updated last year
- PGR-TK: Pangenome Research Tool Kit☆100Updated last year
- ClairS - a deep-learning method for long-read somatic small variant calling☆85Updated last week
- RNA modifications detection from Nanopore dRNA-Seq data☆85Updated 2 weeks ago
- ☆42Updated 3 weeks ago
- ☆115Updated last year
- ☆48Updated 10 months ago
- bioinformatics toolkit in rust☆90Updated last month
- Correct mismatches, microindels, and noncanonical splice junctions in long reads that have been mapped to the genome☆68Updated last year
- Creating alignment plots from bam files☆65Updated last week
- Tandem repeat expansion detection or genotyping from long-read alignments☆118Updated 3 weeks ago
- vcfdist: Accurately benchmarking phased variant calls☆82Updated last week
- ☆113Updated 2 months ago
- accurate LiftOver tool for new genome assemblies☆132Updated 11 months ago
- LoFreq Star: Sensitive variant calling from sequencing data☆105Updated 2 years ago