sstadick / perbase

Related projects ⓘ

Alternatives and complementary repositories for perbase

• milkschen / leviosam2
  Fast and accurate coordinate conversion between assemblies
  ☆110Updated last month
• GeneDx / pgr-tk
  PGR-TK: Pangenome Research Tool Kit
  ☆94Updated 6 months ago
• kcleal / dysgu
  Toolkit for calling structural variants using short or long reads
  ☆98Updated this week
• wdecoster / cramino
  A *fast* tool for BAM/CRAM quality evaluation, intended for long reads
  ☆128Updated this week
• tobiasrausch / wally
  Wally: Visualization of aligned sequencing reads and contigs
  ☆108Updated 2 months ago
• mrvollger / rustybam
  bioinformatics toolkit in rust
  ☆78Updated 6 months ago
• cortes-ciriano-lab / savana
  Somatic structural variant caller for long-read data
  ☆50Updated 2 weeks ago
• COMBINE-lab / oarfish
  long read RNA-seq quantification
  ☆70Updated this week
• Dfam-consortium / TETools
  Dfam Transposable Element Tools Docker container.
  ☆85Updated last month
• fulcrumgenomics / fqgrep
  Grep for FASTQ files
  ☆93Updated last month
• nanoporetech / pinfish
  Tools to annotate genomes using long read transcriptomics data
  ☆45Updated 3 years ago
• quinlan-lab / bedder-rs
  an API for intersections of genomic data
  ☆74Updated this week
• bcgsc / straglr
  Tandem repeat expansion detection or genotyping from long-read alignments
  ☆70Updated last month
• lh3 / bedtk
  A simple toolset for BED files (warning: CLI may change before bedtk becomes stable)
  ☆137Updated 5 months ago
• informationsea / transanno
  accurate LiftOver tool for new genome assemblies
  ☆111Updated 3 months ago
• epi2me-labs / modbam2bed
  ☆48Updated 2 months ago
• brentp / duphold
  don't get DUP'ed or DEL'ed by your putative SVs.
  ☆101Updated 3 years ago
• fulcrumgenomics / fqtk
  Fast FASTQ sample demultiplexing in Rust.
  ☆57Updated 3 months ago
• epi2me-labs / wf-basecalling
  ☆34Updated last week
• fiberseq / fibertools-rs
  Tools for fiberseq data written in rust.
  ☆42Updated last week
• PacificBiosciences / barcoding
  Lima - Demultiplex Barcoded PacBio Samples
  ☆65Updated 3 weeks ago
• brentp / jigv
  igv.js standalone page generator and automatic configuration to view bam/cram/vcf/bed. "working in under 1 minute"
  ☆122Updated last year
• TimD1 / vcfdist
  vcfdist: Accurately benchmarking phased variant calls
  ☆78Updated this week
• PacificBiosciences / trgt
  Tandem repeat genotyping and visualization from PacBio HiFi data
  ☆106Updated this week
• WGLab / NanoCaller
  Variant calling tool for long-read sequencing data
  ☆101Updated this week
• KolmogorovLab / Severus
  A tool for somatic structural variant calling using long reads
  ☆105Updated 2 weeks ago
• PacificBiosciences / pbsv
  pbsv - PacBio structural variant (SV) calling and analysis tools
  ☆130Updated 3 weeks ago
• ryanlayer / stix
  Structural Variant Index
  ☆70Updated this week
• tobiasrausch / alfred
  BAM Statistics, Feature Counting and Annotation
  ☆145Updated 3 weeks ago
• brentp / echtvar
  using all the bits for echt rapid variant annotation and filtering
  ☆144Updated last week