Wavefront alignment algorithm (WFA) in Golang
☆33Oct 28, 2026Updated this week
Alternatives and similar repositories for wfa
Users that are interested in wfa are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Benchmark data structures for kmer sets.☆13Aug 29, 2026Updated 2 months ago
- How many distinct k-mers are there in a sequence?☆11Oct 26, 2026Updated last week
- A Rust library providing fully dynamic sets of k-mers with high locality☆47May 13, 2026Updated 5 months ago
- Make SVG figures out of the Burrows-Wheeler Matrix and various auxiliary text-space and BWT-space structures☆12Oct 14, 2025Updated last year
- QuickEd is a high-performance exact sequence alignment based on the bound-and-align paradigm.☆31May 5, 2025Updated last year
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- A "Navie" Implementation of the Wavefront Algorithm For Sequence Alignment with Gap-Affine Scoring☆14May 29, 2026Updated 5 months ago
- WFA-lib: Wavefront alignment algorithm library v2☆231Oct 25, 2026Updated last week
- implicit pangenome graph☆114Updated this week
- Fast and exact gap-affine partial order alignment☆71Oct 22, 2026Updated last week
- ☆20Sep 16, 2026Updated last month
- A plant organellar Graphical Fragment Assembly toolkit☆17Oct 15, 2026Updated 2 weeks ago
- BWT construction and search☆134Aug 30, 2026Updated 2 months ago
- Optimal distance lower bound k-mer sampling.☆12Jun 19, 2024Updated 2 years ago
- Reference implementations of minimizer schemes to go with the mod-minimizers paper.☆29Jul 12, 2026Updated 3 months ago
- End-to-end encrypted cloud storage - Proton Drive • AdSpecial offer: 40% Off Yearly / 80% Off First Month. Protect your most important files, photos, and documents from prying eyes.
- A general technique to reduce memory consumption and improve the performance of gap-affine and dual gap-affine sequence alignment algorit…☆17Jan 22, 2026Updated 9 months ago
- MEMO: MEM-based pangenome indexing for k-mer queries☆20Jun 11, 2024Updated 2 years ago
- Robust individual and aggregate checksums for nucleotide sequences☆18Mar 3, 2026Updated 7 months ago
- ☆15Jun 29, 2021Updated 5 years ago
- A small, auxiliary index to massively improve parallel fastq parsing☆32Mar 6, 2026Updated 7 months ago
- ☆10Sep 28, 2026Updated last month
- base-accurate DNA sequence alignments using WFA and mashmap3☆225Sep 28, 2026Updated last month
- ☆28Updated this week
- String algorithm visualizations☆14Feb 7, 2023Updated 3 years ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- ☆11Dec 18, 2025Updated 10 months ago
- Genotyping lots of samples with big pangenomes☆11Oct 30, 2025Updated last year
- Dashing 2 is a fast toolkit for k-mer and minimizer encoding, sketching, comparison, and indexing.☆77Oct 23, 2026Updated last week
- Pairwise whole genome aligner☆245Sep 4, 2026Updated last month
- A bioinformatics tool written in Rust to find palindromic sequences in DNA☆39Feb 20, 2026Updated 8 months ago
- Compute hash digests for DNA sequences in a FASTA file☆13May 31, 2026Updated 5 months ago
- A pairwise sequence aligner written in Rust☆152May 22, 2026Updated 5 months ago
- Implementation of the u-index☆12Jul 19, 2025Updated last year
- Fast, Cache-Efficient, and Scalable Queries on Pangenomes☆46Mar 9, 2026Updated 7 months ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Compute bottom-s sketches and s-buckets sketches, using simd-minimizers crate.☆21Aug 26, 2026Updated 2 months ago
- What should perfect bioinformatic tools be like?☆161May 19, 2026Updated 5 months ago
- Simple pileup-based variant caller☆96Apr 25, 2025Updated last year
- rust tool to choose the best read alignment between haploids to a diploid reference genome☆21Oct 20, 2026Updated last week
- Rapid estimation of phylogenetic trees using sketching☆13Feb 18, 2025Updated last year
- PAF (pairwise alignment format) validator based on extended CIGAR strings☆15Aug 10, 2025Updated last year
- An extensible and performant aligner and read mapper☆107Oct 14, 2026Updated 2 weeks ago