Alternatives and similar repositories for filterx

Users that are interested in filterx are comparing it to the libraries listed below

• brianli314 / palindrome-finder
  A bioinformatics tool written in Rust to find palindromic sequences in DNA
  ☆35Updated 2 months ago
• wh-xu / Hyper-Gen
  HyGen: Compact and Efficient Genome Sketching using Hyperdimensional Vectors
  ☆29Updated last year
• robertaboukhalil / alignment-sandbox
  Tool for exploring sequence alignment algorithms
  ☆13Updated last year
• shenwei356 / wfa
  Wavefront alignment algorithm (WFA) in Golang
  ☆32Updated 3 months ago
• IndexThePlanet / LoganSearch
  A k-mer search engine for all Sequence Read Archive public accessions
  ☆35Updated last year
• mbhall88 / nohuman
  Remove human reads from a sequencing run
  ☆40Updated 3 months ago
• vsbuffalo / hgindex
  Hierarchical binned indexed data store for on-disk genomic data.
  ☆13Updated 9 months ago
• pierrepeterlongo / back_to_sequences
  ☆45Updated 2 weeks ago
• lh3 / gffio
  ☆32Updated 2 years ago
• lrobidou / KFC
  ☆19Updated 8 months ago
• JustinChu / ntsm
  This tools counts the number of specific k-mers within sequence data. The counts can then be compare to other counts to determine to comp…
  ☆30Updated 11 months ago
• angelovangel / faster
  A (very) fast program for getting statistics about a fastq file, the way I need them, written in Rust
  ☆31Updated 9 months ago
• moold / kseq-rs
  A FASTA/FASTQ format parser library
  ☆20Updated last year
• ArcInstitute / mmr
  A minimap2 implementation with binseq inputs
  ☆16Updated 3 months ago
• vsbuffalo / genomap
  A Rust library for storing generic genomic data by sorted chromosome name
  ☆17Updated last year
• fawaz-dabbaghieh / gfa_subgraphs
  Extracts subgraphs or components from a graph in GFA format
  ☆25Updated 11 months ago
• Baohua-Chen / GFFx
  A Rust-Based suite of utilities for ultra-fast genomic feature extraction
  ☆24Updated 3 weeks ago
• esteinig / vircov
  Viral genome coverage evaluation for metagenomic diagnostics
  ☆27Updated 2 months ago
• StephenHwang / MEMO
  MEMO: MEM-based pangenome indexing for k-mer queries
  ☆18Updated last year
• varfish-org / mehari
  VEP-like tool for sequence ontology and HGVS annotation of VCF files
  ☆21Updated last week
• shenwei356 / easy_sbatch
  easy_sbatch - Batch submitting Slurm jobs with script templates
  ☆16Updated 3 years ago
• at-cg / PanAligner
  Long read aligner for cyclic and acyclic pangenome graphs
  ☆39Updated last year
• noamteyssier / gia
  gia: Genomic Interval Arithmetic
  ☆64Updated last year
• oxli-bio / oxli
  k-mers and the like
  ☆22Updated last week
• Eco-Flow / synteny
  A Nextflow pipeline for running synteny analysis.
  ☆16Updated 4 months ago
• richarddurbin / syng
  syncmer graphs, and perhaps other sorts of sequence graphs
  ☆21Updated 7 months ago
• marbl / T2T-Browser
  Genome browser hub for the T2T genomes and resources
  ☆23Updated last month
• Plant-Food-Research-Open / genepal
  A Nextflow pipeline for genome and pan-genome annotation
  ☆15Updated this week
• EGTortuero / viga
  De novo VIral Genome Annotator
  ☆23Updated last year
• EvolBioInf / fur
  Find Unique genomic Regions
  ☆30Updated this week