dwpeng / filterxLinks
process any file in tabular format. Fasta/fastq/GTF/GFF/VCF/SAM/BED
☆21Updated 4 months ago
Alternatives and similar repositories for filterx
Users that are interested in filterx are comparing it to the libraries listed below
Sorting:
- A bioinformatics tool written in Rust to find palindromic sequences in DNA☆35Updated 4 months ago
- ☆42Updated 3 months ago
- A k-mer search engine for all Sequence Read Archive public accessions☆29Updated 7 months ago
- ☆32Updated 2 years ago
- Fast long-read mapper and whole-genome aligner (accelerated version of minimap2)☆33Updated last week
- A FASTA/FASTQ format parser library☆20Updated last year
- Lightweight mosaic/somatic SV caller for long reads (WIP)☆29Updated 6 months ago
- Kmer Analysis of Pileups for Genotyping☆30Updated this week
- Implementation of ToL genome assembly workflows☆20Updated 2 weeks ago
- Remove human reads from a sequencing run☆40Updated 8 months ago
- MEMO: MEM-based pangenome indexing for k-mer queries☆18Updated last year
- Wavefront alignment algorithm (WFA) in Golang☆29Updated 7 months ago
- Dividing heterogeneous long-read sequencing into groups with de Bruijn graphs☆25Updated 7 months ago
- Genome browser hub for the T2T genomes and resources☆22Updated 2 months ago
- syncmer graphs, and perhaps other sorts of sequence graphs☆20Updated 2 months ago
- A Nextflow pipeline for running synteny analysis.☆15Updated last week
- Long read aligner for cyclic and acyclic pangenome graphs☆37Updated last year
- GFAffix identifies walk-preserving shared affixes in variation graphs and collapses them into a non-redundant graph structure.☆36Updated 3 weeks ago
- Find Unique genomic Regions☆30Updated 3 months ago
- PAF (pairwise alignment format) validator based on extended CIGAR strings☆14Updated 9 months ago
- Extracts subgraphs or components from a graph in GFA format☆23Updated 7 months ago
- A Nextflow pipeline for genome and pan-genome annotation☆13Updated this week
- lossless nanopore pod5 <=> s/blow5 file conversion☆40Updated 2 months ago
- a lexicographically-based GTF/GFF sorter☆35Updated 2 months ago
- VEP-like tool for sequence ontology and HGVS annotation of VCF files☆20Updated this week
- This tools counts the number of specific k-mers within sequence data. The counts can then be compare to other counts to determine to comp…☆29Updated 7 months ago
- De novo VIral Genome Annotator☆21Updated 9 months ago
- Correcting errors in noisy long reads using variation graphs☆51Updated 2 years ago
- HyGen: Compact and Efficient Genome Sketching using Hyperdimensional Vectors☆27Updated 10 months ago
- ☆18Updated 4 months ago