dwpeng / filterxLinks
process any file in tabular format. Fasta/fastq/GTF/GFF/VCF/SAM/BED
☆21Updated 3 months ago
Alternatives and similar repositories for filterx
Users that are interested in filterx are comparing it to the libraries listed below
Sorting:
- A bioinformatics tool written in Rust to find palindromic sequences in DNA☆37Updated 3 months ago
- Tool for exploring sequence alignment algorithms☆13Updated last year
- A k-mer search engine for all Sequence Read Archive public accessions☆35Updated last year
- Wavefront alignment algorithm (WFA) in Golang☆32Updated 4 months ago
- HyGen: Compact and Efficient Genome Sketching using Hyperdimensional Vectors☆29Updated last year
- ☆45Updated 2 weeks ago
- A (very) fast program for getting statistics about a fastq file, the way I need them, written in Rust☆31Updated 3 weeks ago
- A FASTA/FASTQ format parser library☆20Updated last year
- A minimap2 implementation with binseq inputs☆17Updated last month
- syncmer graphs, and perhaps other sorts of sequence graphs☆23Updated last month
- Genome browser hub for the T2T genomes and resources☆25Updated 2 months ago
- Shared k-mer content between two genomes☆18Updated 2 years ago
- This tools counts the number of specific k-mers within sequence data. The counts can then be compare to other counts to determine to comp…☆30Updated last year
- A Rust library for storing generic genomic data by sorted chromosome name☆17Updated last year
- ☆19Updated 9 months ago
- Generate random test data for bioinformatics☆26Updated last year
- MEMO: MEM-based pangenome indexing for k-mer queries☆18Updated last year
- easy_sbatch - Batch submitting Slurm jobs with script templates☆16Updated 3 years ago
- Given a set of kmers (fasta format) and a set of sequences (fasta format), this tool will extract the sequences containing the kmers.☆21Updated 2 years ago
- Extracts subgraphs or components from a graph in GFA format☆24Updated last year
- Kmer Analysis of Pileups for Genotyping☆34Updated this week
- gia: Genomic Interval Arithmetic☆63Updated last year
- A Nextflow pipeline for running synteny analysis.☆16Updated 5 months ago
- Bam Read Index - Extract alignments from a bam file by readname☆28Updated last year
- VEP-like tool for sequence ontology and HGVS annotation of VCF files☆23Updated last week
- This is a library C/Python/CLI for working with TAF (.taf,.taf.gz) and MAF (.maf) alignment files☆29Updated 3 months ago
- Long-read aligner to pangenome graphs☆28Updated last year
- sunburst plots for taxonomy - working to update Krona☆41Updated 2 months ago
- De novo VIral Genome Annotator☆23Updated last year
- Long read aligner for cyclic and acyclic pangenome graphs☆40Updated last year