process any file in tabular format. Fasta/fastq/GTF/GFF/VCF/SAM/BED
☆24Aug 22, 2025Updated last year
Alternatives and similar repositories for filterx
Users that are interested in filterx are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Taxonomy classification of viral sequences / contigs☆13Jul 15, 2025Updated last year
- ☆20Jan 13, 2026Updated 7 months ago
- Fast, parallel Rust implementation of Prodigal for prokaryotic gene prediction in microbial genomes☆29Jul 26, 2026Updated last month
- A minimal copy fastq and fasta reader built for parallel support and paired end processing☆49Aug 19, 2026Updated last week
- Ultrafast identification of signature sequences in microbial genomes☆20Updated this week
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- Tool for exploring sequence alignment algorithms☆14Aug 30, 2024Updated 2 years ago
- Fast and Memory Efficient Genome Sketching via HyperLogLog, HyperMinHash, UltraLogLog and ExaLogLog☆22Aug 19, 2026Updated last week
- HyGen: Compact and Efficient Genome Sketching using Hyperdimensional Vectors☆33Aug 26, 2024Updated 2 years ago
- A (very) fast program for getting statistics about a fastq file, the way I need them, written in Rust☆33Jul 27, 2026Updated last month
- Ultra-rapid detection of viral variants directly from sequencing data☆47Aug 23, 2026Updated last week
- Viral genome coverage evaluation for metagenomic diagnostics☆27Jul 9, 2026Updated last month
- Tearing through FASTA/Q sequences☆38Jul 9, 2026Updated last month
- Chimera: A Versatile Metagenomic Classification Tool☆21Aug 16, 2026Updated 2 weeks ago
- Fast sequence distance estimates☆31Aug 24, 2026Updated last week
- Bare Metal GPUs on DigitalOcean Gradient AI • AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- BAM/SAM/CRAM/FASTA reader, pileup engine, BCF/BAM writing☆28Updated this week
- BRICK creates a BRIG-like interactive data visualisation for bacterial genome annotations and comparisons☆22Dec 9, 2025Updated 8 months ago
- A Rust-Based suite of utilities for ultra-fast genomic feature extraction☆46Dec 18, 2025Updated 8 months ago
- Exon is an OLAP query engine specifically for biology and life science applications.☆71Mar 26, 2025Updated last year
- Remove human reads from a sequencing run☆52Jun 29, 2026Updated 2 months ago
- Compacted and colored de Bruijn graph construction and querying☆100Updated this week
- ☆14Dec 26, 2025Updated 8 months ago
- A high-performance in-silico PCR tool for primer matching and product extraction from FASTA and GenBank sequences.☆18Feb 25, 2026Updated 6 months ago
- Run a command and report its process tree's CPU, memory, and I/O usage☆21Updated this week
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- An efficient CLI to extract sequences from the SRA☆126Jun 12, 2026Updated 2 months ago
- A small, auxiliary index to massively improve parallel fastq parsing☆32Mar 6, 2026Updated 5 months ago
- Fast DNA search and [host] depletion using minimizers☆125Updated this week
- PyO3 bindings and Python interface to skani, a method for fast genomic identity calculation using sparse chaining.☆29Aug 20, 2025Updated last year
- Command line utility for working with next-generation sequencing files.☆39Jun 24, 2025Updated last year
- Software that separates very close sequences that have been collapsed during assembly. Uses only long reads.☆38Apr 23, 2025Updated last year
- Efficient querying of biological databases☆45Oct 27, 2025Updated 10 months ago
- Hierarchical binned indexed data store for on-disk genomic data.☆13Jan 18, 2025Updated last year
- Basecalling configuration prediction through FASTQ files☆34Mar 17, 2026Updated 5 months ago
- Bare Metal GPUs on DigitalOcean Gradient AI • AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- ☆50Jul 2, 2026Updated last month
- A "Navie" Implementation of the Wavefront Algorithm For Sequence Alignment with Gap-Affine Scoring☆14May 29, 2026Updated 3 months ago
- What should perfect bioinformatic tools be like?☆159May 19, 2026Updated 3 months ago
- Catalogue of pairwise alignment algorithms and benchmarks☆25Jan 6, 2026Updated 7 months ago
- ☆21Feb 15, 2025Updated last year
- (Ready) Yet Another bioinformatics workflow engine https://traitome.github.io/oxo-flow/latest/☆17Updated this week
- Host depletion optimised for clinical metagenomic sequencing applications☆19Jul 9, 2026Updated last month