dwpeng / filterxLinks
process any file in tabular format. Fasta/fastq/GTF/GFF/VCF/SAM/BED
☆21Updated last week
Alternatives and similar repositories for filterx
Users that are interested in filterx are comparing it to the libraries listed below
Sorting:
- A bioinformatics tool written in Rust to find palindromic sequences in DNA☆35Updated 6 months ago
- HyGen: Compact and Efficient Genome Sketching using Hyperdimensional Vectors☆29Updated last year
- Tool for exploring sequence alignment algorithms☆13Updated last year
- Remove human reads from a sequencing run☆40Updated last month
- easy_sbatch - Batch submitting Slurm jobs with script templates☆17Updated 3 years ago
- A Rust library for storing generic genomic data by sorted chromosome name☆17Updated 11 months ago
- ☆32Updated 2 years ago
- ☆44Updated last month
- Wavefront alignment algorithm (WFA) in Golang☆30Updated last month
- A FASTA/FASTQ format parser library☆20Updated last year
- ☆18Updated 6 months ago
- Implementation of ToL genome assembly workflows☆20Updated last week
- MEMO: MEM-based pangenome indexing for k-mer queries☆18Updated last year
- Hierarchical binned indexed data store for on-disk genomic data.☆14Updated 7 months ago
- This tools counts the number of specific k-mers within sequence data. The counts can then be compare to other counts to determine to comp…☆29Updated 9 months ago
- gia: Genomic Interval Arithmetic☆65Updated last year
- A k-mer search engine for all Sequence Read Archive public accessions☆31Updated 10 months ago
- Genome browser hub for the T2T genomes and resources☆23Updated last month
- VEP-like tool for sequence ontology and HGVS annotation of VCF files☆21Updated last week
- A novel method for sequence similarity estimation☆28Updated last year
- A (very) fast program for getting statistics about a fastq file, the way I need them, written in Rust☆32Updated 7 months ago
- A minimap2 implementation with binseq inputs☆16Updated last month
- PAF (pairwise alignment format) validator based on extended CIGAR strings☆14Updated 2 weeks ago
- Fast long-read mapper and whole-genome aligner (accelerated version of minimap2)☆33Updated 2 months ago
- convert alignment bam to pairwise alignment or multiple sequence alignment (msa) at genome specific region☆13Updated last year
- BigSeqKit: a parallel Big Data toolkit to process FASTA and FASTQ files at scale☆56Updated 2 years ago
- k-mers and the like☆22Updated this week
- software to identify primers that can distinguish genomes☆21Updated 7 months ago
- Extracts subgraphs or components from a graph in GFA format☆24Updated 9 months ago
- Viral genome coverage evaluation for metagenomic diagnostics☆28Updated last week