dwpeng / filterx
process any file in tabular format. Fasta/fastq/GTF/GFF/VCF/SAM/BED
☆21Updated this week
Related projects ⓘ
Alternatives and complementary repositories for filterx
- A bioinformatics tool written in Rust to find palindromic sequences in DNA☆27Updated 2 months ago
- Remove human reads from a sequencing run☆24Updated last month
- ☆32Updated last year
- ☆40Updated this week
- Find Unique genomic Regions☆29Updated this week
- Wavefront alignment algorithm (WFA) in Golang☆30Updated 3 weeks ago
- easy_sbatch - Batch submitting Slurm jobs with script templates☆17Updated 2 years ago
- GFAffix identifies walk-preserving shared affixes in variation graphs and collapses them into a non-redundant graph structure.☆34Updated 9 months ago
- A Nextflow workflow to generate lift over files for any pair of genomes☆54Updated last week
- create a interactive coverage plot dashboard from bam files and add gb, vcf and bed tracks☆38Updated 3 months ago
- Long read aligner for cyclic and acyclic pangenome graphs☆35Updated 11 months ago
- Generate random test data for bioinformatics☆25Updated 5 months ago
- HyGen: Compact and Efficient Genome Sketching using Hyperdimensional Vectors☆21Updated 3 months ago
- This is a library C/Python/CLI for working with TAF (.taf,.taf.gz) and MAF (.maf) alignment files☆24Updated last week
- URMAP ultra-fast read mapper☆39Updated 4 years ago
- Fast and exact gap-affine partial order alignment☆40Updated 3 weeks ago
- implicit pangenome graph☆44Updated 3 weeks ago
- Tool for exploring sequence alignment algorithms☆13Updated 2 months ago
- Implementation of ToL genome assembly workflows☆20Updated last week
- A Rust library for storing generic genomic data by sorted chromosome name☆17Updated 2 months ago
- Code to create a PRG from a Multiple Sequence Alignment file☆22Updated 7 months ago
- finding conserved regions in highly diverse genomes☆16Updated 3 months ago
- a lexicographically-based GTF/GFF sorter☆28Updated 3 months ago
- A FASTA/FASTQ format parser library☆20Updated 8 months ago
- A k-mer search engine for all Sequence Read Archive public accessions☆18Updated 3 weeks ago
- VEP-like tool for sequence ontology and HGVS annotation of VCF files☆16Updated this week
- Fast in-silico normalization algorithm for NGS data☆22Updated 3 years ago
- De novo VIral Genome Annotator☆21Updated 2 months ago
- Methylmap is a tool for visualization of modified nucleotide frequencies for large cohort sizes.☆18Updated last week
- ♥ Fast and Accurate Estimation of Evolutionary Distances☆27Updated 6 months ago