Alternatives and similar repositories for SRFAligner:

Users that are interested in SRFAligner are comparing it to the libraries listed below

• RagnarGrootKoerkamp / minimizers
  Reference implementations of minimizer schemes to go with the mod-minimizers paper.
  ☆23Updated last week
• lijuzeng / dna2bit
  ☆12Updated 3 months ago
• moshi4 / pybarrnap
  Python implementation of barrnap (Bacterial ribosomal RNA predictor)
  ☆17Updated last month
• sourmash-bio / sourmash_plugin_branchwater
  fast, multithreaded sourmash operations: search, compare, and gather.
  ☆22Updated this week
• shenwei356 / wfa
  Wavefront alignment algorithm (WFA) in Golang
  ☆30Updated 4 months ago
• iqbal-lab-org / make_prg
  Code to create a PRG from a Multiple Sequence Alignment file
  ☆23Updated 11 months ago
• fawaz-dabbaghieh / gfa_subgraphs
  Extracts subgraphs or components from a graph in GFA format
  ☆23Updated 3 months ago
• rchikhi / rust-seq2kminmers
  Iterate k-min-mers from a DNA sequence in Rust
  ☆13Updated 10 months ago
• rust-seq / minimizer-iter
  Iterate over minimizers of a DNA sequence
  ☆28Updated 7 months ago
• chfi / gfainject
  ☆15Updated last year
• Kmer-File-Format / kff-reference
  Contains the description of a file format to store kmers and associated values
  ☆32Updated 2 years ago
• bluenote-1577 / devider
  Dividing heterogeneous long-read sequencing into groups with de Bruijn graphs
  ☆19Updated 3 months ago
• karel-brinda / Phylign
  Alignment against all pre-2019 bacteria on laptops within a few hours (former MOF-Search)
  ☆27Updated 10 months ago
• broadinstitute / poasta
  Fast and exact gap-affine partial order alignment
  ☆49Updated 3 months ago
• imartayan / CBL
  A Rust library providing fully dynamic sets of k-mers with high locality
  ☆44Updated 5 months ago
• at-cg / PanAligner
  Long read aligner for cyclic and acyclic pangenome graphs
  ☆36Updated last year
• ekg / gimbricate
  recompute GFA link overlaps
  ☆25Updated 2 years ago
• jermp / fulgor
  Fulgor is a fast and space-efficient colored de Bruijn graph index.
  ☆49Updated this week
• algbio / GraphChainer
  An accurate aligner of long reads to a variation graph, based on co-linear chaining
  ☆32Updated last year
• ZekunYin / RabbitMash
  RabbitMash: an efficient highly optimized implementation of Mash.
  ☆21Updated last year
• StephenHwang / MEMO
  MEMO: MEM-based pangenome indexing for k-mer queries
  ☆18Updated 8 months ago
• algbio / matchtigs
  Minimum plain text representation of kmer sets
  ☆17Updated last month
• oxli-bio / oxli
  k-mers and the like
  ☆21Updated last week
• althonos / pyskani
  PyO3 bindings and Python interface to skani, a method for fast genomic identity calculation using sparse chaining.
  ☆27Updated 2 weeks ago
• IndexThePlanet / LoganSearch
  A k-mer search engine for all Sequence Read Archive public accessions
  ☆20Updated 4 months ago
• tongzhouxu / mashpit
  Sketch-based surveillance platform
  ☆13Updated 2 months ago
• Kmer-File-Format / kff-tools
  ☆17Updated last year
• tlemane / kmdiff
  Differential k-mer analysis
  ☆34Updated last year