algbio / SRFAligner
☆13Updated last month
Alternatives and similar repositories for SRFAligner
Users that are interested in SRFAligner are comparing it to the libraries listed below
Sorting:
- Reference implementations of minimizer schemes to go with the mod-minimizers paper.☆24Updated 3 weeks ago
- Wavefront alignment algorithm (WFA) in Golang☆29Updated 6 months ago
- fast, multithreaded sourmash operations: search, compare, and gather.☆22Updated this week
- ☆12Updated 5 months ago
- Dividing heterogeneous long-read sequencing into groups with de Bruijn graphs☆23Updated 6 months ago
- recompute GFA link overlaps☆25Updated 2 years ago
- Fast and exact gap-affine partial order alignment☆50Updated last month
- Alignment algorithm for short Illumina reads to a de Bruijn graph☆16Updated 5 years ago
- A mathematically characterized hypothesis test for organism presence/absence in a metagenome☆30Updated last week
- ☆18Updated 3 months ago
- MEMO: MEM-based pangenome indexing for k-mer queries☆18Updated 11 months ago
- A k-mer-based maximum likelihood method for estimating distances of reads to genomes and phylogenetic placement.☆10Updated last week
- Long read aligner for cyclic and acyclic pangenome graphs☆36Updated last year
- Compute a pairwise SNP distance matrix from one or two alignment(s)☆25Updated 8 months ago
- PG-SCUnK mesure quality of Pan-Genome Graphs using Single Copy and Universal k-mers☆16Updated this week
- Contains the description of a file format to store kmers and associated values☆32Updated 2 years ago
- RabbitMash: an efficient highly optimized implementation of Mash.☆21Updated last year
- Chimera: A Versatile Metagenomic Classification Tool☆18Updated last month
- Sketch-based surveillance platform☆13Updated 5 months ago
- Extracts subgraphs or components from a graph in GFA format☆23Updated 5 months ago
- software to identify primers that can distinguish genomes☆21Updated 3 months ago
- Non-redundant pangenome assemblies from multiple genomes or bins☆13Updated this week
- PyO3 bindings and Python interface to skani, a method for fast genomic identity calculation using sparse chaining.☆27Updated last week
- Code to create a PRG from a Multiple Sequence Alignment file☆25Updated last year
- ⚡️ 🧬 Fulgor is a fast and space-efficient colored de Bruijn graph index.☆50Updated this week
- Sequence-independent identification and removal of adapters/systemic contamination in shotgun sequencing data. https://doi.org/10.1093/bi…☆17Updated 2 years ago
- Python wrapper for wavefront alignment using WFA2-lib☆35Updated 5 months ago
- Iterate over minimizers of a DNA sequence☆29Updated 10 months ago
- ☆10Updated 3 months ago
- Alignment against all pre-2019 bacteria on laptops within a few hours (former MOF-Search)☆33Updated last year