Assort phage protein sequences into phamilies using MMseqs2
☆12Dec 16, 2024Updated last year
Alternatives and similar repositories for phammseqs
Users that are interested in phammseqs are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Predict the function of phage hypothetical proteins using an LSTM model trained with Phage Synteny☆61Jun 4, 2025Updated last year
- Disty McMatrixface - compute a distance matrix from a core genome alignment file☆15Mar 15, 2023Updated 3 years ago
- Assembling phage particles one protein at a time☆26Aug 3, 2026Updated last week
- Calculate fastq reads and sequencing coverage☆15Oct 20, 2020Updated 5 years ago
- Plasmid analysis using rearrangement distances☆56Jul 19, 2026Updated 3 weeks ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- ☆34Dec 20, 2023Updated 2 years ago
- Rapid discovery of novel prophages using biological feature engineering and machine learning☆39Dec 20, 2024Updated last year
- Genomewide Epistasis Analysis on Bacteria☆15Updated this week
- SpydrPick: mutual information based detection of pairs of genomic loci co-evolving under a shared selective pressure.☆16Apr 29, 2022Updated 4 years ago
- ☆13Jul 23, 2026Updated 2 weeks ago
- Prophage Tracer: precisely tracing prophages in prokaryotic genomes using overlapping split-read alignment☆25Oct 16, 2024Updated last year
- A tool easily taken advantage of for in silico serogrouping of Pseudomonas aeruginosa isolates☆15Aug 26, 2024Updated last year
- Parse NCBI CD-search results to find and visualise the domain architecture of secondary metabolite synthases☆26Nov 9, 2022Updated 3 years ago
- scripts for sequence and feature conversion, annotation, analysis ...☆28Mar 17, 2025Updated last year
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Fast and sensitive discovery of complete phages and prophages in bacterial genome sequences☆22Dec 16, 2024Updated last year
- Workflow to assign Taxonomy to a bacteriophage genome isolate☆41Apr 20, 2026Updated 3 months ago
- A tooL for Prokaryotic Phylogeny And Clustering Analysis☆14Updated this week
- A python library for predicting phage lifestyle based on genome sequence☆42Aug 9, 2023Updated 3 years ago
- Pharokka is a rapid standardised annotation tool for bacteriophage genomes and metagenomes.☆222Updated this week
- Recombination-free trees☆72Jul 24, 2026Updated 2 weeks ago
- Microbial Genome Circular plotting tool for comparative genomics using Circos☆39Feb 1, 2023Updated 3 years ago
- 🫧🧬 From fragmented assemblies to high-quality bacteriophage genomes☆84Aug 4, 2026Updated last week
- SpacePHARER CRISPR Spacer Phage-Host pAiRs findER☆48May 8, 2024Updated 2 years ago
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- Comparisons of multiple different prophage predictions☆26Feb 12, 2026Updated 5 months ago
- mGEMS Genomic epidemiology with mixed samples☆17Sep 4, 2024Updated last year
- Bifrost graph gene caller.☆99Jun 18, 2026Updated last month
- Phage-Host Interaction Search Tool☆33Jul 8, 2024Updated 2 years ago
- post processing of bacterial pangenome gene presence/absence matrices☆67Jan 19, 2026Updated 6 months ago
- Bioinformatics tool for Locus Visualisation☆171Mar 30, 2026Updated 4 months ago
- Finding regions of similarity between plasmids☆17Jul 15, 2026Updated 3 weeks ago
- ☆11Sep 16, 2020Updated 5 years ago
- Prediction of prophages from bacterial genomes☆86May 1, 2026Updated 3 months ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Accurate identification of bacteriophages from metagenomic data using Transformer☆22Nov 6, 2024Updated last year
- Identify and remove contaminants from metagenome-assembled genomes☆18Feb 16, 2024Updated 2 years ago
- pipeline for read mapping, snp calling and annotation for bacterial genomes☆13Mar 12, 2024Updated 2 years ago
- Computation of average nucleotide identity with the use of MMseqs2☆24Dec 11, 2024Updated last year
- Discover and annotate the virome☆64Jun 10, 2026Updated 2 months ago
- ViromeScan allows the user to explore and taxonomically characterize the virome from metagenomic reads, efficiently denoising samples fro…☆13Feb 13, 2023Updated 3 years ago
- Local alignment search with k-bounded matching statistics.☆24Aug 19, 2025Updated 11 months ago