chg60 / phammseqsLinks
Assort phage protein sequences into phamilies using MMseqs2
☆11Updated 11 months ago
Alternatives and similar repositories for phammseqs
Users that are interested in phammseqs are comparing it to the libraries listed below
Sorting:
- Protologgger is a tool for the description of novel taxa by providing taxonomic, functional and ecological insights☆15Updated 2 weeks ago
- Finding regions of similarity between plasmids☆16Updated 3 years ago
- Plot genome alignment figure using progressiveMauve & genoPlotR☆22Updated 3 years ago
- software to identify primers that can distinguish genomes☆20Updated 2 weeks ago
- Organism-specific interpretation of AMR genotypes☆15Updated last year
- Visualize microbial evolution at the SNP level!☆15Updated 4 months ago
- tool to determine optimal refrerence genome given a set of fasta files☆15Updated 2 years ago
- ccfind - circular complete genome finder with clues of terminal redundancy☆16Updated 5 years ago
- PyO3 bindings and Python interface to skani, a method for fast genomic identity calculation using sparse chaining.☆27Updated 3 months ago
- ZGA prokaryotic genome assembly and annotation pipeline☆13Updated last year
- pipeline for read mapping, snp calling and annotation for bacterial genomes☆13Updated last year
- ⚡️🧬 FastMLST: A multi-core tool for multilocus sequence typing of draft genome assemblies☆27Updated 3 weeks ago
- Computation of average nucleotide identity with the use of MMseqs2☆15Updated last year
- Variant call verification☆16Updated 7 months ago
- MetagenOmic read Re-Assigner and abundance quantifier☆18Updated 10 months ago
- Comparison pipeline for Prokaryote Protein Coding Gene Predictors☆26Updated last month
- Non-redundant pangenome assemblies from multiple genomes or bins☆14Updated 7 months ago
- Mandrake 🌿/👨🔬🦆 – Fast visualisation of the population structure of pathogens using Stochastic Cluster Embedding☆39Updated 9 months ago
- Generate basic stats for an assembly.☆13Updated 2 years ago
- From genomes to phenotypes: Traitar3, the microbial trait analyzer (for Python3)☆21Updated last year
- Pipeline detecting distant and putative novel insertion sequences in prokaryotic genomes☆11Updated 4 years ago
- GRIMER performs analysis of microbiome studies and generates a portable and interactive dashboard integrating annotation, taxonomy and me…☆24Updated 2 years ago
- Mycobacterium tuberculosis genomic analysis from Nanopore sequencing data☆12Updated last year
- Rapid and simple taxonomic profiling of genome and metagenome contigs☆29Updated 2 years ago
- A pipeline based on EMU, a taxonomic profiler optimized for long 16S rRNA reads.