Assort phage protein sequences into phamilies using MMseqs2
☆12Dec 16, 2024Updated last year
Alternatives and similar repositories for phammseqs
Users that are interested in phammseqs are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Predict the function of phage hypothetical proteins using an LSTM model trained with Phage Synteny☆61Jun 4, 2025Updated last year
- Disty McMatrixface - compute a distance matrix from a core genome alignment file☆15Mar 15, 2023Updated 3 years ago
- Plasmid analysis using rearrangement distances☆55May 28, 2026Updated 2 weeks ago
- Workflow to assign Taxonomy to a bacteriophage genome isolate☆40Apr 20, 2026Updated last month
- Calculate fastq reads and sequencing coverage☆15Oct 20, 2020Updated 5 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- ☆34Dec 20, 2023Updated 2 years ago
- Local alignment search with k-bounded matching statistics.☆23Aug 19, 2025Updated 9 months ago
- Computation of average nucleotide identity with the use of MMseqs2☆24Dec 11, 2024Updated last year
- fast phage annotation program☆211Jun 4, 2026Updated last week
- Rapid discovery of novel prophages using biological feature engineering and machine learning☆39Dec 20, 2024Updated last year
- Discover and annotate the virome☆63Feb 11, 2026Updated 4 months ago
- mGEMS Genomic epidemiology with mixed samples☆16Sep 4, 2024Updated last year
- SpydrPick: mutual information based detection of pairs of genomic loci co-evolving under a shared selective pressure.☆16Apr 29, 2022Updated 4 years ago
- Prophage Tracer: precisely tracing prophages in prokaryotic genomes using overlapping split-read alignment☆25Oct 16, 2024Updated last year
- Bare Metal GPUs on DigitalOcean Gradient AI • AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- ☆13Aug 15, 2025Updated 9 months ago
- Genomewide Epistasis Analysis on Bacteria☆15May 13, 2025Updated last year
- Phage Annotation using Protein Structures☆165Updated this week
- Parse NCBI CD-search results to find and visualise the domain architecture of secondary metabolite synthases☆25Nov 9, 2022Updated 3 years ago
- A tool easily taken advantage of for in silico serogrouping of Pseudomonas aeruginosa isolates☆14Aug 26, 2024Updated last year
- Rapid & standardized genome annotation using protein structural information☆68Jun 1, 2026Updated last week
- Fast and sensitive discovery of complete phages and prophages in bacterial genome sequences☆22Dec 16, 2024Updated last year
- A tooL for Prokaryotic Phylogeny And Clustering Analysis☆13May 22, 2026Updated 2 weeks ago
- A python library for predicting phage lifestyle based on genome sequence☆41Aug 9, 2023Updated 2 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Recombination-free trees☆70Apr 26, 2026Updated last month
- Bifrost graph gene caller.☆98Apr 12, 2026Updated last month
- 🫧🧬 From fragmented assemblies to high-quality bacteriophage genomes☆85Dec 4, 2025Updated 6 months ago
- SpacePHARER CRISPR Spacer Phage-Host pAiRs findER☆48May 8, 2024Updated 2 years ago
- Microbial Genome Circular plotting tool for comparative genomics using Circos☆38Feb 1, 2023Updated 3 years ago
- post processing of bacterial pangenome gene presence/absence matrices☆66Jan 19, 2026Updated 4 months ago
- scripts for sequence and feature conversion, annotation, analysis ...☆28Mar 17, 2025Updated last year
- Finding regions of similarity between plasmids☆17Nov 2, 2022Updated 3 years ago
- ☆11Sep 16, 2020Updated 5 years ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- Prediction of prophages from bacterial genomes☆87May 1, 2026Updated last month
- Comparisons of multiple different prophage predictions☆26Feb 12, 2026Updated 3 months ago
- Phage-Host Interaction Search Tool☆31Jul 8, 2024Updated last year
- Accurate identification of bacteriophages from metagenomic data using Transformer☆22Nov 6, 2024Updated last year
- Identify and remove contaminants from metagenome-assembled genomes☆18Feb 16, 2024Updated 2 years ago
- pipeline for read mapping, snp calling and annotation for bacterial genomes☆13Mar 12, 2024Updated 2 years ago
- ViromeScan allows the user to explore and taxonomically characterize the virome from metagenomic reads, efficiently denoising samples fro…☆13Feb 13, 2023Updated 3 years ago