BackofenLab / CRISPRidentifyLinks
☆30Updated 8 months ago
Alternatives and similar repositories for CRISPRidentify
Users that are interested in CRISPRidentify are comparing it to the libraries listed below
Sorting:
- A toolkit for prokaryotic comparative genomics☆50Updated 7 months ago
- UFCG: Universal Fungal Core Genes☆34Updated 3 weeks ago
- A Python package for obtaining complete lineages and the lowest common ancestor (LCA) from a set of taxonomic identifiers☆51Updated 6 months ago
- Pipeline for major biological analyses.☆35Updated 3 years ago
- Improved Inference of Ortholog Groups using Hidden Markov Models☆37Updated 5 months ago
- Fast and accurate tool for calculating Average Nucleotide Identity (ANI) and clustering virus genomes and metagenomes☆88Updated 3 months ago
- Workflow to rapidly quantify taxa from all domains of life, directly from short-read human gut metagenomes☆65Updated last month
- VirBot: a protein-based RNA virus detector for metagenomic data☆33Updated last year
- Unified Human Gut Virome Catalog☆34Updated last year
- SpacePHARER CRISPR Spacer Phage-Host pAiRs findER☆41Updated last year
- Detection of incorrectly labeled sequences across kingdoms☆85Updated 2 years ago
- PHANOTATE: a gene caller for phages.☆78Updated 8 months ago
- A workflow and scripts for large-scale antiSMASH analyses☆41Updated 4 months ago
- Snakemake workflow for the analysis of biosynthetic gene clusters across large collections of genomes (pangenomes)☆46Updated 8 months ago
- Bioinformatic Tools for study Evolution of metabolic diversity☆34Updated last year
- A program for detection of tRNA genes☆67Updated 2 years ago
- MacSyFinder - Detection of macromolecular systems in protein datasets using systems modelling and similarity search.☆62Updated last week
- a python package for automated generation of phylogenetic trees from genbank files☆22Updated 5 months ago
- Exploring the "dusk matter" of the RNA virosphere☆35Updated 3 years ago
- ☆32Updated 6 months ago
- Universal and efficient structure-based core gene phylogeny with Foldseek and ProstT5☆73Updated 2 months ago
- ☆75Updated this week
- A pipeline for high-quality bacterial genome construction using ONT sequencing☆39Updated 2 years ago
- This repository contains scripts used in the manuscript "Massive expansion of human gut bacteriophage diversity"☆20Updated 4 years ago
- alignment-free coverage calculation for metagenomic binning >100 times faster☆47Updated 5 months ago
- A python library for predicting phage lifestyle based on genome sequence☆38Updated 2 years ago
- EzAAI - High Throughput Prokaryotic AAI Calculator☆44Updated 3 weeks ago
- ☆34Updated last year
- Providing up-to-date phage genome databases, metrics and useful input files for a number of bioinformatic pipelines.☆71Updated 4 months ago
- Predict prokaryotic host for phage metagenomic sequences☆52Updated 11 months ago