BackofenLab / CRISPRidentifyLinks
☆30Updated 6 months ago
Alternatives and similar repositories for CRISPRidentify
Users that are interested in CRISPRidentify are comparing it to the libraries listed below
Sorting:
- PHANOTATE: a gene caller for phages.☆78Updated 7 months ago
- A Python package for obtaining complete lineages and the lowest common ancestor (LCA) from a set of taxonomic identifiers☆50Updated 5 months ago
- ☆72Updated this week
- A toolkit for prokaryotic comparative genomics☆49Updated 5 months ago
- Pipeline for major biological analyses.☆35Updated 3 years ago
- Fast and accurate tool for calculating Average Nucleotide Identity (ANI) and clustering virus genomes and metagenomes☆87Updated last month
- A python library for predicting phage lifestyle based on genome sequence☆38Updated last year
- SpacePHARER CRISPR Spacer Phage-Host pAiRs findER☆40Updated last year
- lsaBGC - Lineage Specific Analysis of Biosynthetic Gene Clusters☆37Updated 2 months ago
- A tool for representing genomic potential and transcriptomic expression into KEGG pathways☆59Updated 11 months ago
- Unified Human Gut Virome Catalog☆32Updated 11 months ago
- UFCG: Universal Fungal Core Genes☆34Updated 5 months ago
- This repository contains scripts used in the manuscript "Massive expansion of human gut bacteriophage diversity"☆20Updated 4 years ago
- a python package for automated generation of phylogenetic trees from genbank files☆22Updated 4 months ago
- zol (& fai): large-scale targeted detection and evolutionary investigation of gene clusters (i.e. BGCs, phages, etc.)☆59Updated 2 weeks ago
- tree visualization for tree + annotation data☆39Updated last month
- A workflow and scripts for large-scale antiSMASH analyses☆41Updated 3 months ago
- EzAAI - High Throughput Prokaryotic AAI Calculator☆42Updated last week
- Predict prokaryotic host for phage metagenomic sequences☆52Updated 10 months ago
- ☆32Updated 4 months ago
- Predict the function of phage hypothetical proteins using an LSTM model trained with Phage Synteny☆50Updated last month
- A curated list of phage related software and computational resources for phage scientists, bioinformaticians and enthusiasts.☆50Updated 3 years ago
- 🦠📇 Microbial genomes-to-report pipeline☆58Updated 3 weeks ago
- ☆55Updated last year
- Bioinformatic Tools for study Evolution of metabolic diversity☆34Updated last year
- GTDB taxonomy taxdump files with trackable TaxIds☆55Updated 2 months ago
- Design degenerated primers on highly variable alignments for full genome sequencing or qPCR. Specifically developed for viruses.☆40Updated last month
- Workflow to rapidly quantify taxa from all domains of life, directly from short-read human gut metagenomes☆65Updated last week
- ☆56Updated last year
- Bacterial GWAS analysis☆42Updated this week