BackofenLab / CRISPRidentifyLinks
☆30Updated 8 months ago
Alternatives and similar repositories for CRISPRidentify
Users that are interested in CRISPRidentify are comparing it to the libraries listed below
Sorting:
- Fast and accurate tool for calculating Average Nucleotide Identity (ANI) and clustering virus genomes and metagenomes☆89Updated 3 months ago
- Unified Human Gut Virome Catalog☆36Updated last week
- A toolkit for prokaryotic comparative genomics☆50Updated 7 months ago
- A Python package for obtaining complete lineages and the lowest common ancestor (LCA) from a set of taxonomic identifiers☆50Updated 7 months ago
- SpacePHARER CRISPR Spacer Phage-Host pAiRs findER☆41Updated last year
- UFCG: Universal Fungal Core Genes☆33Updated last month
- Detection of incorrectly labeled sequences across kingdoms☆85Updated 2 years ago
- Snakemake workflow for the analysis of biosynthetic gene clusters across large collections of genomes (pangenomes)☆47Updated 8 months ago
- PHANOTATE: a gene caller for phages.☆77Updated 9 months ago
- Workflow to rapidly quantify taxa from all domains of life, directly from short-read human gut metagenomes☆64Updated 2 months ago
- lsaBGC - Lineage Specific Analysis of Biosynthetic Gene Clusters☆37Updated 4 months ago
- ☆31Updated 6 months ago
- ☆75Updated this week
- MacSyFinder - Detection of macromolecular systems in protein datasets using systems modelling and similarity search.☆63Updated 3 weeks ago
- a python package for automated generation of phylogenetic trees from genbank files☆22Updated 6 months ago
- Bioinformatic Tools for study Evolution of metabolic diversity☆34Updated last year
- zol (& fai): large-scale targeted detection and evolutionary investigation of gene clusters (i.e. BGCs, phages, etc.)☆62Updated last week
- VirBot: a protein-based RNA virus detector for metagenomic data☆33Updated last year
- A python library for predicting phage lifestyle based on genome sequence☆37Updated 2 years ago
- ☆33Updated last year
- Pipeline for major biological analyses.☆35Updated 3 years ago
- A command line tool to identify and annotate small proteins in microbial sequencing datasets.☆24Updated 2 years ago
- Bacterial GWAS analysis☆43Updated last month
- A workflow and scripts for large-scale antiSMASH analyses☆42Updated 5 months ago
- 🦠🧬🧑💻📇 Microbial genomes-to-report pipeline☆62Updated this week
- A listing of software, tools and databases useful for virome analysis☆44Updated this week
- This repository contains scripts used in the manuscript "Massive expansion of human gut bacteriophage diversity"☆19Updated 4 years ago
- Universal and efficient structure-based core gene phylogeny with Foldseek and ProstT5☆75Updated 2 months ago
- Providing up-to-date phage genome databases, metrics and useful input files for a number of bioinformatic pipelines.☆71Updated 5 months ago
- A fork of Prodigal meant to improve gene calling for giant viruses and viruses that use alternative genetic codes☆37Updated last year