jessieren / VirHostMatcherLinks
VirHostMatcher: matching hosts of viruses based on oligonucleotide frequency (ONF) comparison
☆30Updated 6 years ago
Alternatives and similar repositories for VirHostMatcher
Users that are interested in VirHostMatcher are comparing it to the libraries listed below
Sorting:
- Predict prokaryotic host for phage metagenomic sequences☆52Updated 9 months ago
- VirHostMatcher-Net: A network-based computational tool for predicting virus-host interactions.☆19Updated 3 years ago
- SCAPP is a plasmid assembly tool. This tool is described in our paper: https://microbiomejournal.biomedcentral.com/articles/10.1186/s4016…☆31Updated 2 years ago
- Downstream processing of VAMB binning for Viral Elucidation☆50Updated 11 months ago
- ☆32Updated 4 months ago
- A pipeline to computationally identify invertible DNA regions and quantify their orientations.☆29Updated last year
- A python library for predicting phage lifestyle based on genome sequence☆38Updated last year
- Prophage Activity Estimator☆26Updated last year
- Taxonomic classification of viruses at Order and Family level☆20Updated 2 years ago
- VirBot: a protein-based RNA virus detector for metagenomic data☆30Updated 10 months ago
- PlasX, a machine learning classifier for identifying plasmid sequences based on genetic architecture☆35Updated 3 years ago
- MetaGeneMark-2: Improved Gene Prediction in Metagenomes☆21Updated last year
- ☆54Updated last year
- EzAAI - High Throughput Prokaryotic AAI Calculator☆42Updated 8 months ago
- ☆32Updated last year
- ☆18Updated 4 years ago
- Binning Virus Genomes from Metagenomes☆65Updated 2 years ago
- Jaeger is a quick and precise tool for detecting phages in sequence assemblies.☆31Updated last week
- Improvement of metagenome-assembled genomes☆53Updated 5 years ago
- SameStr identifies shared strains between pairs of metagenomic samples based on the similarity of SNV profiles.☆23Updated 2 months ago
- ☆54Updated last year
- zol (& fai): large-scale targeted detection and evolutionary investigation of gene clusters (i.e. BGCs, phages, etc.)☆59Updated last week
- A pipeline for the macro- and micro-diversity analyses and visualization of metagenomic-derived populations☆42Updated 2 years ago
- Discover and annotate the virome☆43Updated 2 months ago
- Melon: metagenomic long-read-based taxonomic identification and quantification using marker genes☆36Updated 2 months ago
- ☆27Updated last year
- A toolkit for exploring prokaryotic methylation and base modifications in nanopore sequencing☆48Updated 2 weeks ago
- An algorithm for clustering metagenomic sequences.☆37Updated 2 months ago
- Unified Human Gut Virome Catalog☆32Updated 11 months ago
- The viral taxonomic assignment pipeline☆26Updated 3 months ago