jessieren / VirHostMatcherLinks
VirHostMatcher: matching hosts of viruses based on oligonucleotide frequency (ONF) comparison
☆30Updated 7 years ago
Alternatives and similar repositories for VirHostMatcher
Users that are interested in VirHostMatcher are comparing it to the libraries listed below
Sorting:
- Predict prokaryotic host for phage metagenomic sequences☆52Updated last year
- VirHostMatcher-Net: A network-based computational tool for predicting virus-host interactions.☆19Updated 3 years ago
- ☆59Updated last year
- Supporting code for uncultivated gut virus manuscript☆75Updated 2 years ago
- Taxonomic classification of viruses at Order and Family level☆21Updated 2 years ago
- ☆62Updated last year
- Workflow to rapidly quantify taxa from all domains of life, directly from short-read human gut metagenomes☆64Updated last month
- Prophage Activity Estimator☆28Updated last year
- viralVerify: viral contig verification tool☆72Updated 4 years ago
- Providing up-to-date phage genome databases, metrics and useful input files for a number of bioinformatic pipelines.☆74Updated 6 months ago
- Fast and accurate tool for calculating Average Nucleotide Identity (ANI) and clustering virus genomes and metagenomes☆92Updated 5 months ago
- More scalable dereplication for metagenome assembled genomes☆71Updated this week
- SCAPP is a plasmid assembly tool. This tool is described in our paper: https://microbiomejournal.biomedcentral.com/articles/10.1186/s4016…☆34Updated 2 years ago
- Improvement of metagenome-assembled genomes☆54Updated 5 years ago
- ☆35Updated 4 months ago
- Binning Virus Genomes from Metagenomes☆66Updated 3 years ago
- ☆33Updated last year
- ☆31Updated last month
- VirBot: a protein-based RNA virus detector for metagenomic data☆34Updated last year
- A tool to raise the quality of viral genomes assembled from short-read metagenomes via resolving and joining of contigs fragmented during…☆79Updated 2 months ago
- ☆45Updated 2 years ago
- ☆41Updated 4 months ago
- An algorithm for clustering metagenomic sequences.☆39Updated 7 months ago
- A python library for predicting phage lifestyle based on genome sequence☆37Updated 2 years ago
- The viral taxonomic assignment pipeline☆32Updated 3 weeks ago
- EzAAI - High Throughput Prokaryotic AAI Calculator☆44Updated 3 months ago
- Predict the function of phage hypothetical proteins using an LSTM model trained with Phage Synteny☆55Updated 5 months ago
- PHANOTATE: a gene caller for phages.☆78Updated 11 months ago
- Downstream processing of VAMB binning for Viral Elucidation☆50Updated last year
- Rapid discovery of novel prophages using biological feature engineering and machine learning☆36Updated 10 months ago