jessieren / VirHostMatcher
VirHostMatcher: matching hosts of viruses based on oligonucleotide frequency (ONF) comparison
☆28Updated 6 years ago
Related projects ⓘ
Alternatives and complementary repositories for VirHostMatcher
- Predict prokaryotic host for phage metagenomic sequences☆52Updated 2 months ago
- VirHostMatcher-Net: A network-based computational tool for predicting virus-host interactions.☆19Updated 2 years ago
- SCAPP is a plasmid assembly tool. This tool is described in our paper: https://microbiomejournal.biomedcentral.com/articles/10.1186/s4016…☆28Updated last year
- Prophage Activity Estimator☆26Updated 5 months ago
- ☆43Updated last year
- Taxonomic classification of viruses at Order and Family level☆18Updated last year
- Downstream processing of VAMB binning for Viral Elucidation☆46Updated 4 months ago
- ☆30Updated 11 months ago
- A python library for predicting phage lifestyle based on genome sequence☆35Updated last year
- ☆23Updated 9 months ago
- Strain Resolution ON Graphs☆47Updated last year
- EzAAI - High Throughput Prokaryotic AAI Calculator☆36Updated last month
- A pipeline to computationally identify invertible DNA regions and quantify their orientations.☆27Updated 10 months ago
- ☆16Updated 3 years ago
- ☆25Updated 7 months ago
- zol (& fai): large-scale targeted detection and evolutionary investigation of gene clusters (i.e. BGCs, phages, etc.)☆49Updated this week
- Rapid discovery of novel prophages using biological feature engineering and machine learning☆35Updated 2 years ago
- Repository for scripts and resources used for metagenomics with Nanopore, PacBio and Illumina sequencing☆21Updated last year
- Jaeger is a quick and precise tool for detecting phages in sequence assemblies.☆25Updated last week
- MetaGeneMark-2: Improved Gene Prediction in Metagenomes☆18Updated 8 months ago
- A tool for generating bacterial genomes from metagenomes with nanopore long read sequencing☆69Updated 3 years ago
- ViromeQC is a computational tool to benchmark and quantify non-viral contamination in VLP-enrihed viromes. ViromeQC provides an enrichmen…☆18Updated 2 years ago
- This repository contains scripts used in the manuscript "Massive expansion of human gut bacteriophage diversity"☆19Updated 3 years ago
- ☆24Updated 5 years ago
- Microbial Populations as Clusters Of Gene Transfer☆42Updated 11 months ago
- Melon: metagenomic long-read-based taxonomic identification and quantification using marker genes☆25Updated last week
- ☆48Updated 8 months ago
- A curated list of phage related software and computational resources for phage scientists, bioinformaticians and enthusiasts.☆45Updated 2 years ago
- Estimate metagenomic coverage and sequence diversity☆46Updated 3 months ago
- OPAL: Open-community Profiling Assessment tooL☆27Updated 3 months ago