jessieren / VirHostMatcherLinks
VirHostMatcher: matching hosts of viruses based on oligonucleotide frequency (ONF) comparison
☆31Updated 6 years ago
Alternatives and similar repositories for VirHostMatcher
Users that are interested in VirHostMatcher are comparing it to the libraries listed below
Sorting:
- Predict prokaryotic host for phage metagenomic sequences☆52Updated 10 months ago
- A pipeline to computationally identify invertible DNA regions and quantify their orientations.☆29Updated last year
- SCAPP is a plasmid assembly tool. This tool is described in our paper: https://microbiomejournal.biomedcentral.com/articles/10.1186/s4016…☆32Updated 2 years ago
- SpacePHARER CRISPR Spacer Phage-Host pAiRs findER☆40Updated last year
- A toolkit for prokaryotic comparative genomics☆49Updated 5 months ago
- ☆56Updated last year
- Taxonomic classification of viruses at Order and Family level☆20Updated 2 years ago
- VirBot: a protein-based RNA virus detector for metagenomic data☆31Updated 11 months ago
- A python library for predicting phage lifestyle based on genome sequence☆38Updated last year
- Improvement of metagenome-assembled genomes☆53Updated 5 years ago
- viralVerify: viral contig verification tool☆71Updated 3 years ago
- ☆45Updated 2 years ago
- GTDB taxonomy taxdump files with trackable TaxIds☆55Updated 2 months ago
- ☆55Updated last year
- PHANOTATE: a gene caller for phages.☆78Updated 7 months ago
- Binning Virus Genomes from Metagenomes☆65Updated 3 years ago
- ☆27Updated last year
- BRIG is a cross-platform (Windows/Mac/Unix) application that can display circular comparisons between a large number of genomes, with a f…☆34Updated 6 years ago
- Prophage Activity Estimator☆26Updated last year
- VirHostMatcher-Net: A network-based computational tool for predicting virus-host interactions.☆19Updated 3 years ago
- ☆72Updated this week
- Exploring the "dusk matter" of the RNA virosphere☆35Updated 3 years ago
- This repository contains scripts used in the manuscript "Massive expansion of human gut bacteriophage diversity"☆20Updated 4 years ago
- Discover and annotate the virome☆44Updated 2 weeks ago
- Workflow to rapidly quantify taxa from all domains of life, directly from short-read human gut metagenomes☆65Updated last week
- ☆32Updated 4 months ago
- PlasX, a machine learning classifier for identifying plasmid sequences based on genetic architecture☆37Updated 3 years ago
- A tool for generating bacterial genomes from metagenomes with nanopore long read sequencing☆70Updated 3 years ago
- scripts for estimating bacteria replication rates based on population genome copy number variation☆72Updated 5 years ago
- Supporting code for uncultivated gut virus manuscript☆72Updated 2 years ago