VirHostMatcher: matching hosts of viruses based on oligonucleotide frequency (ONF) comparison
☆32Jul 28, 2018Updated 8 years ago
Alternatives and similar repositories for VirHostMatcher
Users that are interested in VirHostMatcher are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- VirHostMatcher-Net: A network-based computational tool for predicting virus-host interactions.☆21Mar 8, 2026Updated 7 months ago
- Predict prokaryotic host for phage metagenomic sequences☆57Sep 17, 2024Updated 2 years ago
- Prokaryotic virus Host Predictor (PHP) is a computational tool for host prediction of prokaryotic viruses based on Gaussian Model (GM). P…☆12Jan 8, 2021Updated 5 years ago
- Predict prokaryotic hosts for phage (meta) genomic sequences☆11Apr 4, 2022Updated 4 years ago
- ☆35Jun 26, 2025Updated last year
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- ViromeQC is a computational tool to benchmark and quantify non-viral contamination in VLP-enrihed viromes. ViromeQC provides an enrichmen…☆21Nov 15, 2022Updated 3 years ago
- Source code of the VirSorter tool, also available as an App on CyVerse/iVirus (https://de.iplantcollaborative.org/de/)☆102Oct 3, 2020Updated 6 years ago
- Identifying viruses from metagenomic data by deep learning☆156May 5, 2026Updated 6 months ago
- This is the complete code base used in Robert A. Edwards, Katelyn McNair, Karoline Faust, Jeroen Raes, and Bas E. Dutilh (2015) Computati…☆17Nov 7, 2021Updated 5 years ago
- VirFinder: a novel k-mer based tool for identifying viral sequences from assembled metagenomic data☆139Apr 9, 2020Updated 6 years ago
- viral Host UnveiLing Kit (vHULK)☆14May 15, 2025Updated last year
- An R package for estimating library complexity☆13Aug 25, 2026Updated 2 months ago
- VIDHOP is a virus host predicting tool. Its able to predict influenza A virus, rabies lyssavirus and rotavirus A.☆23May 7, 2023Updated 3 years ago
- This is a deep learning method for identification of viral contigs with short length from metagenomic data.☆10Dec 20, 2021Updated 4 years ago
- Deploy open-source AI quickly and easily - Special Bonus Offer • AdRunpod Hub is built for open source. One-click deployment and autoscaling endpoints without provisioning your own infrastructure.
- Virus Protein Family tools☆31Jul 20, 2022Updated 4 years ago
- Virus Identification By iteRative ANnoTation☆209Apr 15, 2024Updated 2 years ago
- Graph convolutional neural network for host prediction☆18Jul 13, 2025Updated last year
- Prophage Activity Estimator☆36May 30, 2024Updated 2 years ago
- A tool for identifying phages and plasmids from metagenomic fragments using deep learning☆43Apr 13, 2021Updated 5 years ago
- Kraken extension to identify viral contigs☆10Dec 4, 2020Updated 5 years ago
- Scripts to quality control for metagenomic raw data, including removing the adapters, low quality reads, bases or PCR duplicates☆18Aug 13, 2020Updated 6 years ago
- Database of virus RdRP barcode sequences☆16Jul 5, 2024Updated 2 years ago
- Phage-Host Interaction Search Tool☆33Sep 10, 2026Updated last month
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Taxonomic classification of viruses at Order and Family level☆21Mar 1, 2023Updated 3 years ago
- Exploring the "dusk matter" of the RNA virosphere☆41Mar 25, 2022Updated 4 years ago
- PhaTYP: Predicting lifestyle for bacteriophages using BERT☆20Nov 6, 2024Updated 2 years ago
- Host prediction for phages☆29Nov 6, 2024Updated 2 years ago
- Downstream processing of VAMB binning for Viral Elucidation☆56Jul 3, 2024Updated 2 years ago
- This is graphanalyzer.py, a script designed to automatically interpret the outputs generated by vConTACT2 when using the INPHARED databas…☆18Nov 29, 2023Updated 2 years ago
- Cenote-Taker2: Discover and Annotate Divergent Viral Contigs (Please use Cenote-Taker 3 instead)☆56Jan 19, 2024Updated 2 years ago
- MDMcleaner the assessment, classification and refinement tool for microbial dark matter SAGs and MAGs☆25Mar 19, 2023Updated 3 years ago
- FastViromeExplorer project. Forked from https://code.vt.edu/saima5/FastViromeExplorer☆15Jul 2, 2019Updated 7 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Latest MOCAT2 version☆18Mar 8, 2021Updated 5 years ago
- ☆18Apr 6, 2022Updated 4 years ago
- A scalable high-throughput metabolic and biogeochemical functional trait profiler☆236Mar 24, 2026Updated 7 months ago
- CAT/BAT/RAT: tools for taxonomic classification of contigs and metagenome-assembled genomes (MAGs) and for taxonomic profiling of metage…☆236Updated this week
- customizable pipeline to identify viral sequences from (meta)genomic data☆303Nov 28, 2024Updated last year
- VirusSeeker is a set of fully automated and modular software package designed for mining sequence data to identify sequences of microbial…☆18Oct 31, 2017Updated 9 years ago
- SpacePHARER CRISPR Spacer Phage-Host pAiRs findER☆48May 8, 2024Updated 2 years ago