jessieren / VirHostMatcher
VirHostMatcher: matching hosts of viruses based on oligonucleotide frequency (ONF) comparison
☆30Updated 6 years ago
Alternatives and similar repositories for VirHostMatcher
Users that are interested in VirHostMatcher are comparing it to the libraries listed below
Sorting:
- Predict prokaryotic host for phage metagenomic sequences☆52Updated 7 months ago
- VirHostMatcher-Net: A network-based computational tool for predicting virus-host interactions.☆19Updated 3 years ago
- ☆31Updated 2 months ago
- A pipeline to computationally identify invertible DNA regions and quantify their orientations.☆29Updated last year
- Downstream processing of VAMB binning for Viral Elucidation☆49Updated 10 months ago
- zol (& fai): large-scale targeted detection and evolutionary investigation of gene clusters (i.e. BGCs, phages, etc.)☆59Updated 2 weeks ago
- PHANOTATE: a gene caller for phages.☆75Updated 5 months ago
- VirBot: a protein-based RNA virus detector for metagenomic data☆30Updated 9 months ago
- A toolkit for prokaryotic comparative genomics☆48Updated 3 months ago
- ☆26Updated last year
- Binning Virus Genomes from Metagenomes☆62Updated 2 years ago
- Unified Human Gut Virome Catalog☆31Updated 9 months ago
- ☆32Updated last year
- ☆28Updated 3 months ago
- Taxonomic classification of viruses at Order and Family level☆20Updated 2 years ago
- SCAPP is a plasmid assembly tool. This tool is described in our paper: https://microbiomejournal.biomedcentral.com/articles/10.1186/s4016…☆31Updated 2 years ago
- MetaGeneMark-2: Improved Gene Prediction in Metagenomes☆21Updated last year
- ☆18Updated 4 years ago
- Improvement of metagenome-assembled genomes☆52Updated 5 years ago
- PlasX, a machine learning classifier for identifying plasmid sequences based on genetic architecture☆34Updated 3 years ago
- EzAAI - High Throughput Prokaryotic AAI Calculator☆40Updated 7 months ago
- A toolkit for exploring prokaryotic methylation and base modifications in nanopore sequencing☆47Updated 3 months ago
- Rapid discovery of novel prophages using biological feature engineering and machine learning☆37Updated 4 months ago
- lsaBGC - Lineage Specific Analysis of Biosynthetic Gene Clusters☆37Updated 3 weeks ago
- ☆24Updated 6 years ago
- ☆53Updated last year
- GTDB taxonomy taxdump files with trackable TaxIds☆53Updated 2 weeks ago
- Prophage Activity Estimator☆26Updated 11 months ago
- A workflow and scripts for large-scale antiSMASH analyses☆40Updated last month
- Melon: metagenomic long-read-based taxonomic identification and quantification using marker genes☆35Updated 2 weeks ago