Mining CRISPRs in Environmental Datasets
☆123Feb 10, 2023Updated 3 years ago
Alternatives and similar repositories for minced
Users that are interested in minced are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- CCTyper: Automatic detection and subtyping of CRISPR-Cas operons☆108Feb 15, 2024Updated 2 years ago
- The CRISPR assembler☆34May 13, 2021Updated 4 years ago
- A Perl script allowing to identify CRISPR arrays and associated Cas proteins from DNA sequences☆102Jul 11, 2023Updated 2 years ago
- viralVerify: viral contig verification tool☆74Feb 19, 2026Updated last month
- ☆12Apr 21, 2016Updated 9 years ago
- Deploy open-source AI quickly and easily - Bonus Offer • AdRunpod Hub is built for open source. One-click deployment and autoscaling endpoints without provisioning your own infrastructure.
- Prediction of prophages from bacterial genomes☆82Mar 17, 2026Updated last month
- ☆33Jul 14, 2021Updated 4 years ago
- ☆35Dec 20, 2023Updated 2 years ago
- CRISPR discovery pipeline☆33Nov 2, 2018Updated 7 years ago
- Predict prokaryotic host for phage metagenomic sequences☆55Sep 17, 2024Updated last year
- Scripts to quality control for metagenomic raw data, including removing the adapters, low quality reads, bases or PCR duplicates☆18Aug 13, 2020Updated 5 years ago
- Systematic search of all known anti-phage systems.☆152Apr 2, 2026Updated 2 weeks ago
- VIRify: detection of phages and eukaryotic viruses from metagenomic and metatranscriptomic assemblies☆148Updated this week
- Locate antiviral defence systems in prokaryotic genomes☆71Oct 22, 2024Updated last year
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- customizable pipeline to identify viral sequences from (meta)genomic data☆286Nov 28, 2024Updated last year
- Virus Identification By iteRative ANnoTation☆191Apr 15, 2024Updated 2 years ago
- PHANOTATE: a gene caller for phages.☆85Dec 2, 2024Updated last year
- MacSyFinder - Detection of macromolecular systems in protein datasets using systems modelling and similarity search.☆74Dec 22, 2025Updated 3 months ago
- MARVEL: Metagenomic Analyses and Retrieval of Viral ELements☆51Apr 19, 2024Updated last year
- geNomad: Identification of mobile genetic elements☆301Mar 29, 2026Updated 2 weeks ago
- GTDB-Tk: a toolkit for assigning objective taxonomic classifications to bacterial and archaeal genomes.☆588Updated this week
- Identifying viruses from metagenomic data by deep learning☆150Jun 1, 2025Updated 10 months ago
- Prodigal Gene Prediction Software☆532Jan 23, 2024Updated 2 years ago
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- Tools to analyze the differences and similarities between CRISPR arrays☆11Dec 17, 2024Updated last year
- Resistance Gene Identifier (RGI). Software to predict resistomes from protein or nucleotide data, including metagenomics data, based on h…☆408Mar 26, 2026Updated 3 weeks ago
- Software for prediction of plasmid sequences in metagenomic assemblies☆110Jun 28, 2021Updated 4 years ago
- A tool for identifying phages and plasmids from metagenomic fragments using deep learning☆44Apr 13, 2021Updated 5 years ago
- MetaWRAP - a flexible pipeline for genome-resolved metagenomic data analysis☆467Jul 28, 2023Updated 2 years ago
- Identification & characterization of bacterial plasmid-borne contigs from short-read draft assemblies.☆121Jan 22, 2025Updated last year
- Supporting code for uncultivated gut virus manuscript☆80Jul 17, 2023Updated 2 years ago
- A simple program to classify the lifestyle of phages.☆17May 22, 2023Updated 2 years ago
- Prophage Tracer: precisely tracing prophages in prokaryotic genomes using overlapping split-read alignment☆25Oct 16, 2024Updated last year
- Wordpress hosting with auto-scaling - Free Trial • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Downstream processing of VAMB binning for Viral Elucidation☆55Jul 3, 2024Updated last year
- Cenote-Taker2: Discover and Annotate Divergent Viral Contigs (Please use Cenote-Taker 3 instead)☆55Jan 19, 2024Updated 2 years ago
- Rapid prokaryotic genome annotation☆971Jan 6, 2026Updated 3 months ago
- A Practical and Efficient NCBI Taxonomy Toolkit, also supports creating NCBI-style taxdump files for custom taxonomies like GTDB/ICTV☆469Mar 20, 2026Updated 3 weeks ago
- SpacePHARER CRISPR Spacer Phage-Host pAiRs findER☆46May 8, 2024Updated last year
- Machine learning for accurate identification and classification of CRISPR-Cas systems☆23Dec 20, 2024Updated last year
- CAT/BAT/RAT: tools for taxonomic classification of contigs and metagenome-assembled genomes (MAGs) and for taxonomic profiling of metage…☆229Apr 1, 2026Updated 2 weeks ago