Mining CRISPRs in Environmental Datasets
☆124Feb 10, 2023Updated 3 years ago
Alternatives and similar repositories for minced
Users that are interested in minced are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- CCTyper: Automatic detection and subtyping of CRISPR-Cas operons☆111Feb 15, 2024Updated 2 years ago
- The CRISPR assembler☆35May 13, 2021Updated 5 years ago
- A Perl script allowing to identify CRISPR arrays and associated Cas proteins from DNA sequences☆102Jul 11, 2023Updated 2 years ago
- viralVerify: viral contig verification tool☆75Feb 19, 2026Updated 4 months ago
- ☆12Apr 21, 2016Updated 10 years ago
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- Prediction of prophages from bacterial genomes☆87May 1, 2026Updated 2 months ago
- ☆33Jul 14, 2021Updated 4 years ago
- ☆34Dec 20, 2023Updated 2 years ago
- CRISPR discovery pipeline☆33Nov 2, 2018Updated 7 years ago
- Predict prokaryotic host for phage metagenomic sequences☆56Sep 17, 2024Updated last year
- Scripts to quality control for metagenomic raw data, including removing the adapters, low quality reads, bases or PCR duplicates☆18Aug 13, 2020Updated 5 years ago
- VIRify: detection of phages and eukaryotic viruses from metagenomic and metatranscriptomic assemblies☆152Jun 25, 2026Updated last week
- Systematic search of all known anti-phage systems.☆173May 5, 2026Updated 2 months ago
- Locate antiviral defence systems in prokaryotic genomes☆74Oct 22, 2024Updated last year
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- customizable pipeline to identify viral sequences from (meta)genomic data☆293Nov 28, 2024Updated last year
- PHANOTATE: a gene caller for phages.☆91Dec 2, 2024Updated last year
- Virus Identification By iteRative ANnoTation☆197Apr 15, 2024Updated 2 years ago
- MacSyFinder - Detection of macromolecular systems in protein datasets using systems modelling and similarity search.☆78Dec 22, 2025Updated 6 months ago
- MARVEL: Metagenomic Analyses and Retrieval of Viral ELements☆51Apr 19, 2024Updated 2 years ago
- geNomad: Identification of mobile genetic elements☆319Mar 29, 2026Updated 3 months ago
- Python package to run DefensePredictor, a machine learning model to identify proteins involved in anti-phage defense☆53Apr 27, 2026Updated 2 months ago
- GTDB-Tk: a toolkit for assigning objective taxonomic classifications to bacterial and archaeal genomes.☆609May 20, 2026Updated last month
- Prodigal Gene Prediction Software☆544Jan 23, 2024Updated 2 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Identifying viruses from metagenomic data by deep learning☆154May 5, 2026Updated 2 months ago
- Tools to analyze the differences and similarities between CRISPR arrays☆11Dec 17, 2024Updated last year
- Software for prediction of plasmid sequences in metagenomic assemblies☆111Jun 28, 2021Updated 5 years ago
- Resistance Gene Identifier (RGI). Software to predict resistomes from protein or nucleotide data, including metagenomics data, based on h…☆424May 20, 2026Updated last month
- A tool for identifying phages and plasmids from metagenomic fragments using deep learning☆44Apr 13, 2021Updated 5 years ago
- MetaWRAP - a flexible pipeline for genome-resolved metagenomic data analysis☆472Jul 28, 2023Updated 2 years ago
- Identification & characterization of bacterial plasmid-borne contigs from short-read draft assemblies.☆122May 29, 2026Updated last month
- Supporting code for uncultivated gut virus manuscript☆81Jul 17, 2023Updated 2 years ago
- A simple program to classify the lifestyle of phages.☆18May 22, 2023Updated 3 years ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- Downstream processing of VAMB binning for Viral Elucidation☆55Jul 3, 2024Updated 2 years ago
- Cenote-Taker2: Discover and Annotate Divergent Viral Contigs (Please use Cenote-Taker 3 instead)☆56Jan 19, 2024Updated 2 years ago
- Prophage Tracer: precisely tracing prophages in prokaryotic genomes using overlapping split-read alignment☆25Oct 16, 2024Updated last year
- Rapid prokaryotic genome annotation☆986Jan 6, 2026Updated 5 months ago
- A Practical and Efficient NCBI Taxonomy Toolkit, also supports creating NCBI-style taxdump files for custom taxonomies like GTDB/ICTV☆474May 28, 2026Updated last month
- SpacePHARER CRISPR Spacer Phage-Host pAiRs findER☆48May 8, 2024Updated 2 years ago
- Machine learning for accurate identification and classification of CRISPR-Cas systems☆23Dec 20, 2024Updated last year