Assembling phage particles one protein at a time
β26Aug 3, 2026Updated last week
Alternatives and similar repositories for PholdAPhage
Users that are interested in PholdAPhage are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Predict the function of phage hypothetical proteins using an LSTM model trained with Phage Syntenyβ61Jun 4, 2025Updated last year
- π οΈπ§¬ A Software Framework to Manipulate Assembly Graphsβ21Updated this week
- Python package for phage-host interaction predictionβ15Jul 22, 2026Updated 2 weeks ago
- Fast pairwise transmission inference from single genome and/or metagenomic dataβ37Updated this week
- Render viral capsids in the browser and export SVG.β12Aug 2, 2026Updated last week
- Wordpress hosting with auto-scaling - Free Trial Offer β’ AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Assort phage protein sequences into phamilies using MMseqs2β12Dec 16, 2024Updated last year
- β13Updated this week
- Phage annotations and predictions. A spae is a prediction or foretelling. We'll foretell you what your phage is doing!β46Jun 1, 2026Updated 2 months ago
- Workflow to assign Taxonomy to a bacteriophage genome isolateβ41Apr 20, 2026Updated 3 months ago
- Sequencing and analysis of crAssphage regions from around the globeβ19Apr 7, 2020Updated 6 years ago
- Genomewide Epistasis Analysis on Bacteriaβ15Updated this week
- Phage Annotation using Protein Structuresβ171Updated this week
- Viral protein family functional prediction using protein language modelsβ23Jan 6, 2026Updated 7 months ago
- Universal and efficient structure-based core gene phylogeny with Foldseek and ProstT5β91Mar 12, 2026Updated 4 months ago
- End-to-end encrypted cloud storage - Proton Drive β’ AdSpecial offer: 40% Off Yearly / 80% Off First Month. Protect your most important files, photos, and documents from prying eyes.
- Pharokka is a rapid standardised annotation tool for bacteriophage genomes and metagenomes.β222Updated this week
- Comparison pipeline for Prokaryote Protein Coding Gene Predictorsβ28Feb 12, 2026Updated 5 months ago
- π«§π§¬ From fragmented assemblies to high-quality bacteriophage genomesβ84Aug 4, 2026Updated last week
- Quickly get coverage statistics given reads and an assemblyβ17May 13, 2024Updated 2 years ago
- Convert genbank files to a swath of other formatsβ32Updated this week
- Scripts to build high-quality genome-scale metabolic model by using a deep neural network to guide gapfillingβ19May 26, 2026Updated 2 months ago
- β14Jun 23, 2026Updated last month
- Visualization tool for (meta)genome assembly graphsβ50Updated this week
- Rapid & standardized genome annotation using protein structural informationβ72Jul 2, 2026Updated last month
- GPU virtual machines on DigitalOcean Gradient AI β’ AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- Bioinformatics tool for Locus Visualisationβ171Mar 30, 2026Updated 4 months ago
- Pipeline to create phage genome synteny graphics from genbank filesβ22May 26, 2026Updated 2 months ago
- a command line tool for viral proteomic tree generation, part of the ViPTree project: http://www.genome.jp/viptreeβ38May 25, 2026Updated 2 months ago
- Phage-Host Interaction Search Toolβ33Jul 8, 2024Updated 2 years ago
- π¦π§¬ Binning Metagenomic Contigs via Composition, Coverage and Assembly Graphsβ69Jul 26, 2026Updated 2 weeks ago
- Fast and accurate tool for calculating Average Nucleotide Identity (ANI) and clustering virus genomes and metagenomesβ110Jul 7, 2026Updated last month
- Embedding-based annotation transfer (EAT) uses Euclidean distance between vector representations (embeddings) of proteins to transfer annβ¦β41Aug 29, 2025Updated 11 months ago
- BinaRena: Interactive Visualization and Binning of Metagenomic Contigsβ33Aug 22, 2024Updated last year
- The viral taxonomic assignment pipelineβ45Apr 16, 2026Updated 3 months ago
- 1-Click AI Models by DigitalOcean Gradient β’ AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- A tool for generating consensus long-read assemblies for bacterial genomesβ236Aug 4, 2026Updated last week
- Development repository for R package 'PLSDAbatch ' hosted on Bioconductor.β16Jun 26, 2026Updated last month
- Reference-free Binning of Metagenomics Long Reads using Coverage and Compositionβ20Sep 10, 2024Updated last year
- Extremely accurate algorithm used to group DNA sequences from microbial communities into operational taxonomic units (proxy for species) β¦β14Nov 20, 2018Updated 7 years ago
- Visualise networks and trees in Python, with style.β91May 5, 2026Updated 3 months ago
- Data and scripts for Zika virus tutorialβ10Jul 21, 2026Updated 2 weeks ago
- hecatomb is a virome analysis pipeline for analysis of Illumina sequence dataβ61Sep 23, 2025Updated 10 months ago