Assembling phage particles one protein at a time
☆26Aug 3, 2026Updated 3 weeks ago
Alternatives and similar repositories for PholdAPhage
Users that are interested in PholdAPhage are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Predict the function of phage hypothetical proteins using an LSTM model trained with Phage Synteny☆61Jun 4, 2025Updated last year
- 🛠️🧬 A Software Framework to Manipulate Assembly Graphs☆21Aug 8, 2026Updated 3 weeks ago
- Python package for phage-host interaction prediction☆17Updated this week
- Fast pairwise transmission inference from single genome and/or metagenomic data☆37Aug 21, 2026Updated last week
- Render viral capsids in the browser and export SVG.☆12Aug 2, 2026Updated 3 weeks ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- Assort phage protein sequences into phamilies using MMseqs2☆12Dec 16, 2024Updated last year
- ☆13Aug 17, 2026Updated last week
- Phage annotations and predictions. A spae is a prediction or foretelling. We'll foretell you what your phage is doing!☆46Jun 1, 2026Updated 2 months ago
- Workflow to assign Taxonomy to a bacteriophage genome isolate☆41Apr 20, 2026Updated 4 months ago
- Sequencing and analysis of crAssphage regions from around the globe☆20Apr 7, 2020Updated 6 years ago
- Genomewide Epistasis Analysis on Bacteria☆15Aug 7, 2026Updated 3 weeks ago
- Phage Annotation using Protein Structures☆171Updated this week
- Viral protein family functional prediction using protein language models☆23Jan 6, 2026Updated 7 months ago
- Universal and efficient structure-based core gene phylogeny with Foldseek and ProstT5☆91Mar 12, 2026Updated 5 months ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Comparison pipeline for Prokaryote Protein Coding Gene Predictors☆28Feb 12, 2026Updated 6 months ago
- 🫧🧬 From fragmented assemblies to high-quality bacteriophage genomes☆86Aug 24, 2026Updated last week
- Quickly get coverage statistics given reads and an assembly☆17May 13, 2024Updated 2 years ago
- Convert genbank files to a swath of other formats☆32Aug 9, 2026Updated 3 weeks ago
- Scripts to build high-quality genome-scale metabolic model by using a deep neural network to guide gapfilling☆19May 26, 2026Updated 3 months ago
- ☆14Jun 23, 2026Updated 2 months ago
- Visualization tool for (meta)genome assembly graphs☆50Updated this week
- Rapid & standardized genome annotation using protein structural information☆75Jul 2, 2026Updated last month
- Bioinformatics tool for Locus Visualisation☆171Mar 30, 2026Updated 5 months ago
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- Pipeline to create phage genome synteny graphics from genbank files☆22May 26, 2026Updated 3 months ago
- a command line tool for viral proteomic tree generation, part of the ViPTree project: http://www.genome.jp/viptree☆38May 25, 2026Updated 3 months ago
- Phage-Host Interaction Search Tool☆33Jul 8, 2024Updated 2 years ago
- 🚦🧬 Binning Metagenomic Contigs via Composition, Coverage and Assembly Graphs☆69Updated this week
- Fast and accurate tool for calculating Average Nucleotide Identity (ANI) and clustering virus genomes and metagenomes☆110Jul 7, 2026Updated last month
- Embedding-based annotation transfer (EAT) uses Euclidean distance between vector representations (embeddings) of proteins to transfer ann…☆41Aug 29, 2025Updated last year
- BinaRena: Interactive Visualization and Binning of Metagenomic Contigs☆33Aug 22, 2024Updated 2 years ago
- The viral taxonomic assignment pipeline☆46Apr 16, 2026Updated 4 months ago
- A tool for generating consensus long-read assemblies for bacterial genomes☆238Aug 14, 2026Updated 2 weeks ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Development repository for R package 'PLSDAbatch ' hosted on Bioconductor.☆16Jun 26, 2026Updated 2 months ago
- Reference-free Binning of Metagenomics Long Reads using Coverage and Composition☆20Sep 10, 2024Updated last year
- Extremely accurate algorithm used to group DNA sequences from microbial communities into operational taxonomic units (proxy for species) …☆14Nov 20, 2018Updated 7 years ago
- Visualise networks and trees in Python, with style.☆91May 5, 2026Updated 3 months ago
- Data and scripts for Zika virus tutorial☆10Jul 21, 2026Updated last month
- hecatomb is a virome analysis pipeline for analysis of Illumina sequence data☆61Sep 23, 2025Updated 11 months ago
- Reference-guided multiple sequence alignment of viral genomes☆73May 30, 2026Updated 3 months ago