A Perl script allowing to identify CRISPR arrays and associated Cas proteins from DNA sequences
☆103Jul 11, 2023Updated 2 years ago
Alternatives and similar repositories for CRISPRCasFinder
Users that are interested in CRISPRCasFinder are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Machine learning for accurate identification and classification of CRISPR-Cas systems☆23Dec 20, 2024Updated last year
- CCTyper: Automatic detection and subtyping of CRISPR-Cas operons☆111Feb 15, 2024Updated 2 years ago
- Mining CRISPRs in Environmental Datasets☆124Feb 10, 2023Updated 3 years ago
- customizable pipeline to identify viral sequences from (meta)genomic data☆293Nov 28, 2024Updated last year
- Distilled and Refined Annotation of Metabolism: A tool for the annotation and curation of function for microbial and viral genomes☆334Jun 3, 2026Updated last month
- Bare Metal GPUs on DigitalOcean Gradient AI • AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- code repo for mobileOG-db☆49Nov 6, 2025Updated 8 months ago
- Phigaro is a scalable command-line tool for predicting phages and prophages☆53Jan 8, 2024Updated 2 years ago
- ☆35Jun 26, 2025Updated last year
- MacSyFinder - Detection of macromolecular systems in protein datasets using systems modelling and similarity search.☆78Dec 22, 2025Updated 6 months ago
- A CRISPR repeat|spacer analysis tool☆20May 7, 2021Updated 5 years ago
- Virus Identification By iteRative ANnoTation☆197Apr 15, 2024Updated 2 years ago
- ☆19May 13, 2021Updated 5 years ago
- geNomad: Identification of mobile genetic elements☆319Mar 29, 2026Updated 3 months ago
- viralVerify: viral contig verification tool☆75Feb 19, 2026Updated 4 months ago
- Simple, predictable pricing with DigitalOcean hosting • AdAlways know what you'll pay with monthly caps and flat pricing. Enterprise-grade infrastructure trusted by 600k+ customers.
- Assessing the quality of metagenome-derived genome bins using machine learning☆269Mar 20, 2025Updated last year
- Virus Protein Family tools☆31Jul 20, 2022Updated 3 years ago
- This is graphanalyzer.py, a script designed to automatically interpret the outputs generated by vConTACT2 when using the INPHARED databas…☆19Nov 29, 2023Updated 2 years ago
- Prediction of prophages from bacterial genomes☆87May 1, 2026Updated 2 months ago
- VirHostMatcher: matching hosts of viruses based on oligonucleotide frequency (ONF) comparison☆31Jul 28, 2018Updated 7 years ago
- Resistance Gene Identifier (RGI). Software to predict resistomes from protein or nucleotide data, including metagenomics data, based on h…☆424May 20, 2026Updated last month
- Rapid & standardized annotation of bacterial genomes, MAGs & plasmids☆661May 15, 2026Updated last month
- Metagenomic search for novel CRISPR-transposons☆12Sep 30, 2021Updated 4 years ago
- Prophage Tracer: precisely tracing prophages in prokaryotic genomes using overlapping split-read alignment☆25Oct 16, 2024Updated last year
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- ☆26Apr 20, 2023Updated 3 years ago
- Software for prediction of plasmid sequences in metagenomic assemblies☆111Jun 28, 2021Updated 5 years ago
- Prophage Activity Estimator☆33May 30, 2024Updated 2 years ago
- Contains a fasta format database of a large variety of mobile genetic elements and an annotation file☆53Aug 16, 2021Updated 4 years ago
- SpacePHARER CRISPR Spacer Phage-Host pAiRs findER☆48May 8, 2024Updated 2 years ago
- A scalable high-throughput metabolic and biogeochemical functional trait profiler☆227Mar 24, 2026Updated 3 months ago
- A random forest classifier to identify contigs of plasmid origin in contig and scaffold genomes☆22Apr 20, 2023Updated 3 years ago
- Binning Virus Genomes from Metagenomes☆75Jul 13, 2022Updated 3 years ago
- Fast Whole-Genome Similarity (ANI) Estimation☆468Dec 16, 2025Updated 6 months ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Identification & characterization of bacterial plasmid-borne contigs from short-read draft assemblies.☆122May 29, 2026Updated last month
- Systematic search of all known anti-phage systems.☆173May 5, 2026Updated 2 months ago
- ☆34Dec 20, 2023Updated 2 years ago
- Downstream processing of VAMB binning for Viral Elucidation☆55Jul 3, 2024Updated 2 years ago
- A python pipeline to identify IS (Insertion Sequence) elements in genome and metagenome☆113Dec 5, 2025Updated 7 months ago
- A toolbox for identifying mobile genetic element (MGE) insertions from short-read sequencing data of bacterial isolates.☆128Oct 30, 2023Updated 2 years ago
- viralFlye pipeline☆18Aug 12, 2024Updated last year