dcouvin / CRISPRCasFinderLinks
A Perl script allowing to identify CRISPR arrays and associated Cas proteins from DNA sequences
☆92Updated last year
Alternatives and similar repositories for CRISPRCasFinder
Users that are interested in CRISPRCasFinder are comparing it to the libraries listed below
Sorting:
- Pipeline for metabolic annotation of microbial genomes☆149Updated 3 months ago
- A toolbox for identifying mobile genetic element (MGE) insertions from short-read sequencing data of bacterial isolates.☆121Updated last year
- A python pipeline to identify IS (Insertion Sequence) elements in genome and metagenome☆95Updated 2 months ago
- Similarity networks of biosynthetic gene clusters☆117Updated last week
- A wrapper to identify, bin, classify, and predict host-viral relationship for viruses☆73Updated 6 months ago
- Systematic search of all known anti-phage systems.☆108Updated last week
- Precise phylogenetic analysis of microbial isolates and genomes from metagenomes☆147Updated last week
- Find clustered hits from a BLAST search☆117Updated 6 months ago
- Bioinformatics tool for Locus Visualisation☆106Updated last month
- geNomad: Identification of mobile genetic elements☆246Updated 2 weeks ago
- Supporting code for uncultivated gut virus manuscript☆72Updated last year
- fast phage annotation program☆166Updated last week
- Assessing the quality of metagenome-derived genome bins using machine learning☆214Updated 3 months ago
- Open-source usearch☆112Updated last year
- MacSyFinder - Detection of macromolecular systems in protein datasets using systems modelling and similarity search.☆62Updated 6 months ago
- Download files from NCBI Entrez by accession☆126Updated 9 months ago
- A tool for drawing ANI clustermap between all-vs-all microbial genomes☆83Updated last month
- MGnify genome analysis pipeline☆106Updated last week
- Local version of the virus identification and analysis web server (tool set)☆61Updated this week
- Bioinformatics program inStrain☆173Updated last month
- Metagenomic classification of long-read sequencing data☆85Updated last month
- Run_dbcan V4, using genomes/metagenomes/proteomes of any assembled organisms (prokaryotes, fungi, plants, animals, viruses) to search for…☆150Updated 2 months ago
- DDBJ Fast Annotation and Submission Tool☆79Updated last month
- motus - a tool for marker gene-based OTU (mOTU) profiling☆154Updated last year
- breseq is a computational pipeline for finding mutations relative to a reference sequence using high-throughput DNA resequencing data. It…☆162Updated last week
- A tool for classifying prokaryote protein sequences into COG(Cluster of Orthologous Genes) functional category☆67Updated last month
- A tool to raise the quality of viral genomes assembled from short-read metagenomes via resolving and joining of contigs fragmented during…☆70Updated 10 months ago
- GenoVi, an automated customizable circular genome visualizer for bacteria and archaea☆95Updated 2 years ago
- A tool for generating consensus long-read assemblies for bacterial genomes☆147Updated this week
- MetaEuk - sensitive, high-throughput gene discovery and annotation for large-scale eukaryotic metagenomics☆190Updated 11 months ago