A Perl script allowing to identify CRISPR arrays and associated Cas proteins from DNA sequences
☆102Jul 11, 2023Updated 2 years ago
Alternatives and similar repositories for CRISPRCasFinder
Users that are interested in CRISPRCasFinder are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Machine learning for accurate identification and classification of CRISPR-Cas systems☆23Dec 20, 2024Updated last year
- CCTyper: Automatic detection and subtyping of CRISPR-Cas operons☆109Feb 15, 2024Updated 2 years ago
- Mining CRISPRs in Environmental Datasets☆125Feb 10, 2023Updated 3 years ago
- customizable pipeline to identify viral sequences from (meta)genomic data☆291Nov 28, 2024Updated last year
- Distilled and Refined Annotation of Metabolism: A tool for the annotation and curation of function for microbial and viral genomes☆334May 20, 2026Updated last week
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- code repo for mobileOG-db☆49Nov 6, 2025Updated 6 months ago
- Phigaro is a scalable command-line tool for predicting phages and prophages☆52Jan 8, 2024Updated 2 years ago
- ☆35Jun 26, 2025Updated 11 months ago
- MacSyFinder - Detection of macromolecular systems in protein datasets using systems modelling and similarity search.☆77Dec 22, 2025Updated 5 months ago
- A CRISPR repeat|spacer analysis tool☆20May 7, 2021Updated 5 years ago
- Virus Identification By iteRative ANnoTation☆195Apr 15, 2024Updated 2 years ago
- ☆19May 13, 2021Updated 5 years ago
- geNomad: Identification of mobile genetic elements☆313Mar 29, 2026Updated 2 months ago
- viralVerify: viral contig verification tool☆75Feb 19, 2026Updated 3 months ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- Assessing the quality of metagenome-derived genome bins using machine learning☆263Mar 20, 2025Updated last year
- Virus Protein Family tools☆31Jul 20, 2022Updated 3 years ago
- This is graphanalyzer.py, a script designed to automatically interpret the outputs generated by vConTACT2 when using the INPHARED databas…☆19Nov 29, 2023Updated 2 years ago
- Prediction of prophages from bacterial genomes☆86May 1, 2026Updated 3 weeks ago
- VirHostMatcher: matching hosts of viruses based on oligonucleotide frequency (ONF) comparison☆31Jul 28, 2018Updated 7 years ago
- Resistance Gene Identifier (RGI). Software to predict resistomes from protein or nucleotide data, including metagenomics data, based on h…☆416May 20, 2026Updated last week
- Rapid & standardized annotation of bacterial genomes, MAGs & plasmids☆643May 15, 2026Updated 2 weeks ago
- Metagenomic search for novel CRISPR-transposons☆12Sep 30, 2021Updated 4 years ago
- Prophage Tracer: precisely tracing prophages in prokaryotic genomes using overlapping split-read alignment☆25Oct 16, 2024Updated last year
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- ☆25Apr 20, 2023Updated 3 years ago
- Software for prediction of plasmid sequences in metagenomic assemblies☆111Jun 28, 2021Updated 4 years ago
- Prophage Activity Estimator☆33May 30, 2024Updated 2 years ago
- Contains a fasta format database of a large variety of mobile genetic elements and an annotation file☆52Aug 16, 2021Updated 4 years ago
- SpacePHARER CRISPR Spacer Phage-Host pAiRs findER☆48May 8, 2024Updated 2 years ago
- A scalable high-throughput metabolic and biogeochemical functional trait profiler☆226Mar 24, 2026Updated 2 months ago
- A random forest classifier to identify contigs of plasmid origin in contig and scaffold genomes☆22Apr 20, 2023Updated 3 years ago
- Binning Virus Genomes from Metagenomes☆74Jul 13, 2022Updated 3 years ago
- Fast Whole-Genome Similarity (ANI) Estimation☆461Dec 16, 2025Updated 5 months ago
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- Identification & characterization of bacterial plasmid-borne contigs from short-read draft assemblies.☆121Jan 22, 2025Updated last year
- Systematic search of all known anti-phage systems.☆170May 5, 2026Updated 3 weeks ago
- ☆34Dec 20, 2023Updated 2 years ago
- Downstream processing of VAMB binning for Viral Elucidation☆55Jul 3, 2024Updated last year
- A python pipeline to identify IS (Insertion Sequence) elements in genome and metagenome☆110Dec 5, 2025Updated 5 months ago
- A toolbox for identifying mobile genetic element (MGE) insertions from short-read sequencing data of bacterial isolates.☆126Oct 30, 2023Updated 2 years ago
- Rapid comparison and dereplication of genomes☆341Nov 10, 2025Updated 6 months ago