dcouvin / CRISPRCasFinder

Related projects ⓘ

Alternatives and complementary repositories for CRISPRCasFinder

• cruizperez / MicrobeAnnotator
  Pipeline for metabolic annotation of microbial genomes
  ☆140Updated 4 months ago
• bhattlab / MGEfinder
  A toolbox for identifying mobile genetic element (MGE) insertions from short-read sequencing data of bacterial isolates.
  ☆110Updated last year
• apcamargo / genomad
  geNomad: Identification of mobile genetic elements
  ☆194Updated last week
• medema-group / BiG-SCAPE
  Similarity networks of biosynthetic gene clusters
  ☆73Updated this week
• gamcil / cblaster
  Find clustered hits from a BLAST search
  ☆98Updated 3 months ago
• kblin / ncbi-acc-download
  Download files from NCBI Entrez by accession
  ☆111Updated 2 months ago
• rcedgar / usearch12
  Open-source usearch
  ☆100Updated 5 months ago
• gbouras13 / pharokka
  fast phage annotation program
  ☆148Updated this week
• nigyta / dfast_core
  DDBJ Fast Annotation and Submission Tool
  ☆78Updated last month
• DessimozLab / read2tree
  a tool for inferring species tree from sequencing reads
  ☆144Updated this week
• AnantharamanLab / ViWrap
  A wrapper to identify, bin, classify, and predict host-viral relationship for viruses
  ☆63Updated 3 weeks ago
• EBI-Metagenomics / genomes-catalogue-pipeline
  MGnify genome analysis pipeline
  ☆101Updated this week
• snayfach / MGV
  Supporting code for uncultivated gut virus manuscript
  ☆66Updated last year
• motu-tool / mOTUs
  motus - a tool for marker gene-based OTU (mOTU) profiling
  ☆147Updated 6 months ago
• chklovski / CheckM2
  Assessing the quality of metagenome-derived genome bins using machine learning
  ☆173Updated 5 months ago
• moshi4 / ANIclustermap
  A tool for drawing ANI clustermap between all-vs-all microbial genomes
  ☆67Updated 2 months ago
• biobakery / phylophlan
  Precise phylogenetic analysis of microbial isolates and genomes from metagenomes
  ☆128Updated this week
• phac-nml / mob-suite
  MOB-suite: Software tools for clustering, reconstruction and typing of plasmids from draft assemblies
  ☆124Updated last month
• xiezhq / ISEScan
  A python pipeline to identify IS (Insertion Sequence) elements in genome and metagenome
  ☆84Updated last year
• moshi4 / COGclassifier
  A tool for classifying prokaryote protein sequences into COG(Cluster of Orthologous Genes) functional category
  ☆56Updated 2 months ago
• robotoD / GenoVi
  GenoVi, an automated customizable circular genome visualizer for bacteria and archaea
  ☆84Updated last year
• CompSynBioLab-KoreaUniv / FunGAP
  FunGAP: fungal Genome Annotation Pipeline
  ☆109Updated last year
• barricklab / breseq
  breseq is a computational pipeline for finding mutations relative to a reference sequence in short-read DNA resequencing data. It is inte…
  ☆149Updated 3 weeks ago
• klebgenomics / Kleborate
  ☆116Updated this week
• Russel88 / CRISPRCasTyper
  CCTyper: Automatic detection and subtyping of CRISPR-Cas operons
  ☆93Updated 9 months ago
• neherlab / pan-genome-analysis
  Processing pipeline for pan-genome visulization and exploration
  ☆134Updated last year
• bhattlab / kraken2_classification
  Snakemake workflow for metagenomic classification with Kraken2
  ☆65Updated last year
• takaram / kofam_scan
  CLI tool to annotate genes with KOfam
  ☆72Updated last year
• mdmparis / defense-finder
  Systematic search of all known anti-phage systems.
  ☆77Updated 2 weeks ago
• linnabrown / run_dbcan
  Run_dbcan V4, using genomes/metagenomes/proteomes of any assembled organisms (prokaryotes, fungi, plants, animals, viruses) to search for…
  ☆145Updated 2 months ago