dcouvin / CRISPRCasFinderLinks
A Perl script allowing to identify CRISPR arrays and associated Cas proteins from DNA sequences
☆94Updated 2 years ago
Alternatives and similar repositories for CRISPRCasFinder
Users that are interested in CRISPRCasFinder are comparing it to the libraries listed below
Sorting:
- A toolbox for identifying mobile genetic element (MGE) insertions from short-read sequencing data of bacterial isolates.☆124Updated last year
- Pipeline for metabolic annotation of microbial genomes☆150Updated 5 months ago
- Supporting code for uncultivated gut virus manuscript☆73Updated 2 years ago
- A wrapper to identify, bin, classify, and predict host-viral relationship for viruses☆76Updated 8 months ago
- Systematic search of all known anti-phage systems.☆114Updated 2 months ago
- Precise phylogenetic analysis of microbial isolates and genomes from metagenomes☆155Updated 2 months ago
- Recovery of prokaryotic genomes from shotgun metagenomic sequencing data☆63Updated 4 years ago
- Find clustered hits from a BLAST search☆120Updated 8 months ago
- Run_dbcan V4, using genomes/metagenomes/proteomes of any assembled organisms (prokaryotes, fungi, plants, animals, viruses) to search for…☆154Updated 4 months ago
- Similarity networks of biosynthetic gene clusters☆126Updated this week
- motus - a tool for marker gene-based OTU (mOTU) profiling☆157Updated last year
- A python pipeline to identify IS (Insertion Sequence) elements in genome and metagenome☆99Updated 4 months ago
- geNomad: Identification of mobile genetic elements☆257Updated last month
- Bioinformatics program inStrain☆174Updated 3 months ago
- VIRify: detection of phages and eukaryotic viruses from metagenomic and metatranscriptomic assemblies☆140Updated 3 weeks ago
- ARGs-OAP: Online Analysis Pipeline for Antibiotic Resistance Genes Detection from Metagenomic Data Using an Integrated Structured ARG Dat…☆57Updated 5 months ago
- CLI tool to annotate genes with KOfam☆86Updated 2 years ago
- Open-source usearch☆117Updated last week
- fast phage annotation program☆176Updated 3 weeks ago
- Bioinformatics tool for Locus Visualisation☆113Updated 3 months ago
- Mining CRISPRs in Environmental Datasets☆110Updated 2 years ago
- Download files from NCBI Entrez by accession☆127Updated 11 months ago
- MacSyFinder - Detection of macromolecular systems in protein datasets using systems modelling and similarity search.☆62Updated last week
- A tool to raise the quality of viral genomes assembled from short-read metagenomes via resolving and joining of contigs fragmented during…☆74Updated 2 months ago
- ☆113Updated last year
- Assessing the quality of metagenome-derived genome bins using machine learning☆223Updated 5 months ago
- A tool for drawing ANI clustermap between all-vs-all microbial genomes☆85Updated 3 months ago
- ultrafast taxonomic profiling and genome querying for metagenomic samples by abundance-corrected minhash.☆244Updated last month
- DDBJ Fast Annotation and Submission Tool☆82Updated 3 months ago
- CCTyper: Automatic detection and subtyping of CRISPR-Cas operons☆101Updated last year