dcouvin / CRISPRCasFinderLinks
A Perl script allowing to identify CRISPR arrays and associated Cas proteins from DNA sequences
☆100Updated 2 years ago
Alternatives and similar repositories for CRISPRCasFinder
Users that are interested in CRISPRCasFinder are comparing it to the libraries listed below
Sorting:
- Pipeline for metabolic annotation of microbial genomes☆150Updated 8 months ago
- A toolbox for identifying mobile genetic element (MGE) insertions from short-read sequencing data of bacterial isolates.☆124Updated 2 years ago
- Precise phylogenetic analysis of microbial isolates and genomes from metagenomes☆159Updated 5 months ago
- Systematic search of all known anti-phage systems.☆128Updated last month
- Similarity networks of biosynthetic gene clusters☆145Updated this week
- Find clustered hits from a BLAST search☆126Updated 3 weeks ago
- Supporting code for uncultivated gut virus manuscript☆76Updated 2 years ago
- Recovery of prokaryotic genomes from shotgun metagenomic sequencing data☆62Updated 4 years ago
- Run_dbcan V4, using genomes/metagenomes/proteomes of any assembled organisms (prokaryotes, fungi, plants, animals, viruses) to search for…☆154Updated 7 months ago
- MacSyFinder - Detection of macromolecular systems in protein datasets using systems modelling and similarity search.☆70Updated 2 months ago
- ARGs-OAP: Online Analysis Pipeline for Antibiotic Resistance Genes Detection from Metagenomic Data Using an Integrated Structured ARG Dat…☆66Updated 8 months ago
- A tool to raise the quality of viral genomes assembled from short-read metagenomes via resolving and joining of contigs fragmented during…☆82Updated 3 months ago
- A wrapper to identify, bin, classify, and predict host-viral relationship for viruses☆82Updated 11 months ago
- Open-source usearch☆123Updated 3 months ago
- A python pipeline to identify IS (Insertion Sequence) elements in genome and metagenome☆100Updated this week
- Bioinformatics tool for Locus Visualisation☆147Updated last month
- motus - a tool for marker gene-based OTU (mOTU) profiling☆163Updated 2 weeks ago
- Nature Communications | BASALT (Binning Across a Series of Assemblies Toolkit) for binning and refinement of short- and long-read sequenc…☆124Updated this week
- ultrafast taxonomic profiling and genome querying for metagenomic samples by abundance-corrected minhash.☆265Updated last month
- Identifying viruses from metagenomic data by deep learning☆149Updated 6 months ago
- CCTyper: Automatic detection and subtyping of CRISPR-Cas operons☆103Updated last year
- Download files from NCBI Entrez by accession☆131Updated last year
- HGTector2: Genome-wide prediction of horizontal gene transfer based on distribution of sequence homology patterns.☆139Updated 2 years ago
- MetaEuk - sensitive, high-throughput gene discovery and annotation for large-scale eukaryotic metagenomics☆200Updated 3 months ago
- geNomad: Identification of mobile genetic elements☆275Updated last month
- fast phage annotation program☆187Updated 2 weeks ago
- GenoVi, an automated customizable circular genome visualizer for bacteria and archaea☆99Updated 2 years ago
- Prediction of apoplastic and cytoplasmic effectors in fungi and oomycetes☆24Updated 3 years ago
- Processing pipeline for pan-genome visulization and exploration☆142Updated 2 years ago
- Bioinformatics program inStrain☆180Updated 7 months ago