Russel88 / CRISPRCasTyperLinks
CCTyper: Automatic detection and subtyping of CRISPR-Cas operons
☆102Updated last year
Alternatives and similar repositories for CRISPRCasTyper
Users that are interested in CRISPRCasTyper are comparing it to the libraries listed below
Sorting:
- MacSyFinder - Detection of macromolecular systems in protein datasets using systems modelling and similarity search.☆67Updated 3 weeks ago
- Metabuli: specific and sensitive metagenomic classification via joint analysis of DNA and amino acid.☆153Updated this week
- Similarity networks of biosynthetic gene clusters☆133Updated 2 weeks ago
- A highly scalable, user-interactive tool for the large scale analysis of Biosynthetic Gene Clusters data☆87Updated 2 months ago
- Phage Annotation using Protein Structures☆130Updated last month
- MGnify genome analysis pipeline☆108Updated 2 weeks ago
- Find clustered hits from a BLAST search☆123Updated this week
- Systematic search of all known anti-phage systems.☆122Updated last week
- ☆132Updated last year
- Providing up-to-date phage genome databases, metrics and useful input files for a number of bioinformatic pipelines.☆73Updated 6 months ago
- Bioinformatics tool for Locus Visualisation☆125Updated 5 months ago
- Supporting code for uncultivated gut virus manuscript☆75Updated 2 years ago
- Predict oxygen, temperature, salinity, and pH preferences of bacteria and archaea from a genome☆57Updated 7 months ago
- sensitive and precise assembly of short sequencing reads☆161Updated last year
- A Perl script allowing to identify CRISPR arrays and associated Cas proteins from DNA sequences☆99Updated 2 years ago
- Logan Unitigs and Contigs☆174Updated last month
- Run_dbcan V4, using genomes/metagenomes/proteomes of any assembled organisms (prokaryotes, fungi, plants, animals, viruses) to search for…☆152Updated 6 months ago
- Follow up to Grace Blackwell's 661k dataset, for 2023☆124Updated 2 months ago
- MetaEuk - sensitive, high-throughput gene discovery and annotation for large-scale eukaryotic metagenomics☆198Updated 2 months ago
- Discovery of conserved gene clusters in multiple genomes☆110Updated 5 months ago
- A Python package for obtaining complete lineages and the lowest common ancestor (LCA) from a set of taxonomic identifiers☆50Updated 8 months ago
- Bioinformatic Tools for study Evolution of metabolic diversity☆35Updated last year
- BRIG is a cross-platform (Windows/Mac/Unix) application that can display circular comparisons between a large number of genomes, with a f…☆37Updated 6 years ago
- Exploring the "dusk matter" of the RNA virosphere☆35Updated 3 years ago
- RNA secondary structure/sequence profiles for homology search and alignment☆115Updated 11 months ago
- A tool for representing genomic potential and transcriptomic expression into KEGG pathways☆59Updated last year
- Viral protein family functional prediction using protein language models☆21Updated last year
- A simple command-line tool to download data from Joint Genome Institute databases☆52Updated 2 years ago
- Cython bindings and Python interface to Prodigal, an ORF finder for genomes and metagenomes. Now with SIMD!☆171Updated 2 months ago
- Precise phylogenetic analysis of microbial isolates and genomes from metagenomes☆158Updated 4 months ago