Russel88 / CRISPRCasTyperLinks
CCTyper: Automatic detection and subtyping of CRISPR-Cas operons
☆102Updated last year
Alternatives and similar repositories for CRISPRCasTyper
Users that are interested in CRISPRCasTyper are comparing it to the libraries listed below
Sorting:
- Systematic search of all known anti-phage systems.☆109Updated last month
- Phage Annotation using Protein Structures☆109Updated 2 weeks ago
- Metabuli: specific and sensitive metagenomic classification via joint analysis of DNA and amino acid.☆141Updated last week
- MGnify genome analysis pipeline☆108Updated this week
- MacSyFinder - Detection of macromolecular systems in protein datasets using systems modelling and similarity search.☆62Updated 7 months ago
- Similarity networks of biosynthetic gene clusters☆119Updated last week
- Find clustered hits from a BLAST search☆119Updated 7 months ago
- Providing up-to-date phage genome databases, metrics and useful input files for a number of bioinformatic pipelines.☆67Updated 3 months ago
- ☆130Updated 10 months ago
- Logan Unitigs and Contigs☆137Updated this week
- sensitive and precise assembly of short sequencing reads☆156Updated 9 months ago
- Supporting code for uncultivated gut virus manuscript☆72Updated 2 years ago
- A Perl script allowing to identify CRISPR arrays and associated Cas proteins from DNA sequences☆92Updated 2 years ago
- A highly scalable, user-interactive tool for the large scale analysis of Biosynthetic Gene Clusters data☆82Updated 7 months ago
- Bioinformatics tool for Locus Visualisation☆111Updated 2 months ago
- MetaEuk - sensitive, high-throughput gene discovery and annotation for large-scale eukaryotic metagenomics☆190Updated last year
- RNA secondary structure/sequence profiles for homology search and alignment☆112Updated 8 months ago
- Predict oxygen, temperature, salinity, and pH preferences of bacteria and archaea from a genome☆55Updated 3 months ago
- Pipeline for metabolic annotation of microbial genomes☆149Updated 3 months ago
- A simple command-line tool to download data from Joint Genome Institute databases☆52Updated 2 years ago
- Exploring the "dusk matter" of the RNA virosphere☆35Updated 3 years ago
- ☆30Updated 6 months ago
- Run_dbcan V4, using genomes/metagenomes/proteomes of any assembled organisms (prokaryotes, fungi, plants, animals, viruses) to search for…☆153Updated 2 months ago
- Machine-learning-based general bacterial promoter prediction tool.☆48Updated 2 years ago
- Precise phylogenetic analysis of microbial isolates and genomes from metagenomes☆150Updated last month
- BRIG is a cross-platform (Windows/Mac/Unix) application that can display circular comparisons between a large number of genomes, with a f…☆34Updated 6 years ago
- A tool for representing genomic potential and transcriptomic expression into KEGG pathways☆59Updated 11 months ago
- Bioinformatic Tools for study Evolution of metabolic diversity☆34Updated last year
- A quick and easy way to download the genomes/predicted proteins of taxa available in JGI's Genome Portal.☆37Updated last month
- Cython bindings and Python interface to Prodigal, an ORF finder for genomes and metagenomes. Now with SIMD!☆162Updated last month