steineggerlab / conterminator
Detection of incorrectly labeled sequences across kingdoms
☆79Updated 2 years ago
Related projects ⓘ
Alternatives and complementary repositories for conterminator
- A tool for generating bacterial genomes from metagenomes with nanopore long read sequencing☆69Updated 3 years ago
- Bioinformatics tool for Locus Visualisation☆70Updated this week
- lsaBGC - Lineage Specific Analysis of Biosynthetic Gene Clusters☆37Updated 3 months ago
- CLI tool to annotate genes with KOfam☆72Updated last year
- ☆56Updated last month
- Scalable creating/updating of metagenome profiling databases☆58Updated last year
- ☆35Updated this week
- ☆42Updated 3 years ago
- Protein Alignment and Detection Interface☆60Updated 7 months ago
- Rapid discovery of novel prophages using biological feature engineering and machine learning☆35Updated 2 years ago
- orthology assignment using phylogenetic and network analyses☆44Updated last month
- A package to annotate protein sequences☆53Updated 4 months ago
- Pipeline for major biological analyses.☆34Updated 2 years ago
- A python library for predicting phage lifestyle based on genome sequence☆35Updated last year
- zol (& fai): large-scale targeted detection and evolutionary investigation of gene clusters (i.e. BGCs, phages, etc.)☆49Updated this week
- IslandPath standalone software☆31Updated last year
- 🦠📇 Microbial genomes-to-report pipeline☆54Updated last week
- ☆36Updated 11 months ago
- ☆43Updated last year
- A workflow and scripts for large-scale antiSMASH analyses☆30Updated this week
- OPAL: Open-community Profiling Assessment tooL☆27Updated 2 months ago
- Microbiome classification pipeline☆64Updated 7 months ago
- PATO is a R package designed to analyze pangenomes (set of genomes) intra or inter species.☆56Updated last year
- A Python package for obtaining complete lineages and the lowest common ancestor (LCA) from a set of taxonomic identifiers☆40Updated 3 months ago
- Indels are not ideal - quick test for interrupted ORFs in bacterial/microbial genomes☆52Updated last year
- Gene-flank analysis tool☆26Updated 6 months ago
- A tool for drawing ANI clustermap between all-vs-all microbial genomes☆67Updated last month
- Repository for scripts and resources used for metagenomics with Nanopore, PacBio and Illumina sequencing☆21Updated last year
- PLSDB pipeline to collect bacterial plasmids from NCBI☆36Updated 2 weeks ago