steineggerlab / conterminatorLinks
Detection of incorrectly labeled sequences across kingdoms
☆87Updated 3 years ago
Alternatives and similar repositories for conterminator
Users that are interested in conterminator are comparing it to the libraries listed below
Sorting:
- Scalable creating/updating of metagenome profiling databases☆63Updated 6 months ago
- A nextflow pipeline for decontamination of short reads, long reads and contigs☆55Updated 5 months ago
- A toolkit for prokaryotic comparative genomics☆51Updated 2 months ago
- A tool for generating bacterial genomes from metagenomes with nanopore long read sequencing☆69Updated 4 years ago
- hifiasm_meta - de novo metagenome assembler, based on hifiasm, a haplotype-resolved de novo assembler for PacBio Hifi reads.☆69Updated last month
- A package to annotate protein sequences☆60Updated 10 months ago
- Protein Alignment and Detection Interface☆60Updated last year
- Python tool to reduce size and redundancy of phylogenetic datasets☆48Updated 3 weeks ago
- ☆41Updated 4 years ago
- ☆81Updated last month
- Multi-platform genome assembly pipeline for Illumina, Nanopore and PacBio reads☆64Updated last year
- Improved Inference of Ortholog Groups using Hidden Markov Models☆37Updated 3 months ago
- SHOOT.bio - the phylogenetic search engine☆27Updated 2 years ago
- Discover and annotate the virome☆56Updated 2 months ago
- tree visualization for tree + annotation data☆45Updated 6 months ago
- This is the codebase for Recycler, described in our manuscript: https://academic.oup.com/bioinformatics/article/33/4/475/2623362, by Roye…☆58Updated 4 years ago
- ShortBRED is a pipeline to take a set of protein sequences, reduce them to a set of unique identifying strings ("markers"), and then sear…☆31Updated 11 months ago
- ☆45Updated 2 years ago
- Gene-flank analysis tool☆34Updated last year
- A Python package for obtaining complete lineages and the lowest common ancestor (LCA) from a set of taxonomic identifiers☆52Updated last month
- zol (& fai): large-scale targeted detection and evolutionary investigation of gene clusters (i.e. BGCs, phages, etc.)☆70Updated this week
- ☆43Updated last year
- UFCG: Universal Fungal Core Genes☆34Updated 4 months ago
- Design degenerated primers on highly variable alignments for full genome sequencing or qPCR. Specifically developed for viruses.☆45Updated last week
- Workflow to rapidly quantify taxa from all domains of life, directly from short-read human gut metagenomes☆70Updated 3 weeks ago
- A listing of software, tools and databases useful for virome analysis☆58Updated last week
- PHANOTATE: a gene caller for phages.☆79Updated last year
- ☆28Updated 5 years ago
- Fast and accurate tool for calculating Average Nucleotide Identity (ANI) and clustering virus genomes and metagenomes☆95Updated 7 months ago
- Metaphor: a general-purpose workflow for assembly and binning of metagenomes☆40Updated last month