steineggerlab / conterminatorLinks
Detection of incorrectly labeled sequences across kingdoms
☆86Updated 3 years ago
Alternatives and similar repositories for conterminator
Users that are interested in conterminator are comparing it to the libraries listed below
Sorting:
- A nextflow pipeline for decontamination of short reads, long reads and contigs☆55Updated 5 months ago
- Workflow to rapidly quantify taxa from all domains of life, directly from short-read human gut metagenomes☆67Updated this week
- Protein Alignment and Detection Interface☆60Updated last year
- A package to annotate protein sequences☆60Updated 9 months ago
- Python tool to reduce size and redundancy of phylogenetic datasets☆48Updated 2 years ago
- A tool for generating bacterial genomes from metagenomes with nanopore long read sequencing☆69Updated 4 years ago
- Scalable creating/updating of metagenome profiling databases☆62Updated 5 months ago
- SHOOT.bio - the phylogenetic search engine☆27Updated 2 years ago
- A toolkit for prokaryotic comparative genomics☆51Updated last month
- ☆28Updated 5 years ago
- ☆80Updated last week
- Fast and accurate tool for calculating Average Nucleotide Identity (ANI) and clustering virus genomes and metagenomes☆94Updated 6 months ago
- tree visualization for tree + annotation data☆43Updated 5 months ago
- UFCG: Universal Fungal Core Genes☆34Updated 4 months ago
- hifiasm_meta - de novo metagenome assembler, based on hifiasm, a haplotype-resolved de novo assembler for PacBio Hifi reads.☆68Updated 2 weeks ago
- BRIG is a cross-platform (Windows/Mac/Unix) application that can display circular comparisons between a large number of genomes, with a f…☆37Updated 6 years ago
- A Python package for obtaining complete lineages and the lowest common ancestor (LCA) from a set of taxonomic identifiers☆52Updated 3 weeks ago
- Visualize whole genome alignments as linear maps☆74Updated 4 months ago
- ☆52Updated 7 months ago
- SpacePHARER CRISPR Spacer Phage-Host pAiRs findER☆43Updated last year
- visualising sequence similarity with Circos☆41Updated 6 years ago
- FastOMA is a scalable software package to infer orthology relationship.☆85Updated this week
- zol (& fai): large-scale targeted detection and evolutionary investigation of gene clusters (i.e. BGCs, phages, etc.)☆70Updated 2 weeks ago
- Reference-guided multiple sequence alignment of viral genomes☆70Updated last month
- Design degenerated primers on highly variable alignments for full genome sequencing or qPCR. Specifically developed for viruses.☆44Updated 3 months ago
- a multiple sequence alignment-trimming algorithm for accurate phylogenomic inference☆81Updated last month
- hecatomb is a virome analysis pipeline for analysis of Illumina sequence data☆59Updated 2 months ago
- ☆39Updated 2 years ago
- Improved Inference of Ortholog Groups using Hidden Markov Models☆37Updated 2 months ago
- Gene-flank analysis tool☆34Updated 11 months ago