Alternatives and similar repositories for conterminator

Users that are interested in conterminator are comparing it to the libraries listed below

• rki-mf1 / clean
  A nextflow pipeline for decontamination of short reads, long reads and contigs
  ☆55Updated 6 months ago
• leylabmpi / Struo2
  Scalable creating/updating of metagenome profiling databases
  ☆63Updated 6 months ago
• PedroMTQ / mantis
  A package to annotate protein sequences
  ☆60Updated 10 months ago
• ToniWestbrook / paladin
  Protein Alignment and Detection Interface
  ☆60Updated last year
• fmalmeida / MpGAP
  Multi-platform genome assembly pipeline for Illumina, Nanopore and PacBio reads
  ☆64Updated last year
• xfengnefx / hifiasm-meta
  hifiasm_meta - de novo metagenome assembler, based on hifiasm, a haplotype-resolved de novo assembler for PacBio Hifi reads.
  ☆69Updated last month
• weisberglab / beav
  BEAV: Bacterial Element Annotation reVamped
  ☆73Updated 4 months ago
• fmenardo / Treemmer
  Python tool to reduce size and redundancy of phylogenetic datasets
  ☆48Updated last month
• bhattlab / bhattlab_workflows
  Computational workflows for metagenomics tasks, by the Bhatt lab
  ☆47Updated 2 years ago
• drboothtj / getphylo
  a python package for automated generation of phylogenetic trees from genbank files
  ☆23Updated 2 months ago
• happykhan / BRIG
  BRIG is a cross-platform (Windows/Mac/Unix) application that can display circular comparisons between a large number of genomes, with a f…
  ☆37Updated 6 years ago
• davidemms / SHOOT
  SHOOT.bio - the phylogenetic search engine
  ☆27Updated 2 years ago
• JLSteenwyk / ClipKIT
  a multiple sequence alignment-trimming algorithm for accurate phylogenomic inference
  ☆81Updated 3 months ago
• compgenomicslab / TreeProfiler
  tree visualization for tree + annotation data
  ☆45Updated 7 months ago
• EBI-Metagenomics / mettannotator
  ☆81Updated last month
• balabanmetin / uDance
  ☆43Updated last year
• vinisalazar / metaphor
  Metaphor: a general-purpose workflow for assembly and binning of metagenomes
  ☆40Updated 2 months ago
• kshulgina / codetta
  ☆52Updated 8 months ago
• SWittouck / SCARAP
  A toolkit for prokaryotic comparative genomics
  ☆51Updated 3 months ago
• Shamir-Lab / Recycler
  This is the codebase for Recycler, described in our manuscript: https://academic.oup.com/bioinformatics/article/33/4/475/2623362, by Roye…
  ☆58Updated 4 years ago
• functional-dark-side / agnostos-wf
  ☆45Updated 2 years ago
• steineggerlab / ufcg
  UFCG: Universal Fungal Core Genes
  ☆34Updated 5 months ago
• soedinglab / spacepharer
  SpacePHARER CRISPR Spacer Phage-Host pAiRs findER
  ☆44Updated last year
• apcamargo / taxopy
  A Python package for obtaining complete lineages and the lowest common ancestor (LCA) from a set of taxonomic identifiers
  ☆52Updated 2 months ago
• DessimozLab / FastOMA
  FastOMA is a scalable software package to infer orthology relationship.
  ☆86Updated 2 weeks ago
• bhattlab / lathe
  A tool for generating bacterial genomes from metagenomes with nanopore long read sequencing
  ☆68Updated 4 years ago
• jonas-fuchs / varVAMP
  Design degenerated primers on highly variable alignments for full genome sequencing or qPCR. Specifically developed for viruses.
  ☆46Updated this week
• refresh-bio / vclust
  Fast and accurate tool for calculating Average Nucleotide Identity (ANI) and clustering virus genomes and metagenomes
  ☆95Updated 7 months ago
• JLSteenwyk / orthohmm
  Improved Inference of Ortholog Groups using Hidden Markov Models
  ☆37Updated 4 months ago
• wtmatlock / flanker
  Gene-flank analysis tool
  ☆34Updated last year