siyuh / SquidiffLinks
☆99Updated 2 months ago
Alternatives and similar repositories for Squidiff
Users that are interested in Squidiff are comparing it to the libraries listed below
Sorting:
- ☆68Updated 5 months ago
- ☆22Updated last year
- Repository for Nicheformer: a foundation model for single-cell and spatial omics☆141Updated last month
- A unified approach for integrating spatial and single-cell transcriptomics data by leveraging deep generative models☆76Updated last year
- ☆90Updated 4 months ago
- A simulator for single cell multi-omics and spatial omics data that provides ground truth to benchmark a wide range of methods.☆67Updated 2 months ago
- Deep Transfer Learning of Drug Sensitivity by Integrating Bulk and Single-cell RNA-seq data☆58Updated last year
- ☆16Updated 7 months ago
- ☆59Updated 3 weeks ago
- Single-cell perturbation effects prediction benchmark☆47Updated last week
- PerturbNet is a deep generative model that can predict the distribution of cell states induced by chemical or genetic perturbation☆59Updated this week
- Single-cell biological network inference using a heterogeneous graph transformer☆76Updated 10 months ago
- ☆15Updated last year
- ☆79Updated 4 months ago
- Python agent-based model tool for inference, visualization and analysis of cell-cell communication from single-cell data☆35Updated last month
- End-to-end analysis of spatial multi-omics data☆101Updated 2 months ago
- Repository for paper scMulan: a multitask generative pre-trained language model for single-cell analysis.☆61Updated last year
- ☆48Updated 6 months ago
- Code for evaluating single cell foundation models scBERT and scGPT☆46Updated last year
- A model developed for the generation of scRNA-seq data☆82Updated 10 months ago
- Additional code and analysis from the single-cell integration benchmarking project☆71Updated 3 years ago
- ☆60Updated last year
- scDesign3 generates realistic in silico data for multimodal single-cell and spatial omics☆112Updated 3 months ago
- Transformer for One-Stop Interpretable Cell-type Annotation☆146Updated last year
- ☆90Updated 2 years ago
- Modeling complex perturbations with CellFlow☆104Updated 3 weeks ago
- 🏃 The go-to single-cell Foundation Model☆128Updated 3 weeks ago
- ☆49Updated 9 months ago
- ☆89Updated last year
- ☆56Updated last year