siyuh / SquidiffLinks
☆42Updated last week
Alternatives and similar repositories for Squidiff
Users that are interested in Squidiff are comparing it to the libraries listed below
Sorting:
- PerturbNet is a deep generative model that can predict the distribution of cell states induced by chemical or genetic perturbation☆53Updated 4 months ago
- ☆58Updated 3 months ago
- Repository for Nicheformer: a foundation model for single-cell and spatial omics☆115Updated 7 months ago
- A model developed for the generation of scRNA-seq data☆78Updated 8 months ago
- The Compositional Perturbation Autoencoder (CPA) is a deep generative framework to learn effects of perturbations at the single-cell leve…☆118Updated last year
- ☆13Updated 5 months ago
- Single-Cell (Perturbation) Model Library☆81Updated 2 months ago
- ☆52Updated 2 months ago
- 🏃 The go-to single-cell Foundation Model☆117Updated last week
- A unified approach for integrating spatial and single-cell transcriptomics data by leveraging deep generative models☆73Updated last year
- Modeling complex perturbations with CellFlow☆95Updated last week
- ☆86Updated last year
- Evaluation suite for transcriptomic perturbation effect prediction models. Includes support for single-cell foundation models.☆29Updated 3 months ago
- Code for evaluating single cell foundation models scBERT and scGPT☆46Updated last year
- ☆37Updated 2 weeks ago
- ☆85Updated 2 years ago
- Single-cell biological network inference using a heterogeneous graph transformer☆76Updated 8 months ago
- CancerFoundation: A single-cell RNA sequencing foundation model to decipher drug resistance in cancer☆28Updated 2 months ago
- scPerturb: A resource and a python/R tool for single-cell perturbation data☆151Updated 8 months ago
- A simulator for single cell multi-omics and spatial omics data that provides ground truth to benchmark a wide range of methods.☆63Updated last week
- Repository for paper scMulan: a multitask generative pre-trained language model for single-cell analysis.☆59Updated last year
- ☆15Updated 3 years ago
- Models and datasets for perturbational single-cell omics☆167Updated 3 years ago
- ☆85Updated 2 months ago
- Additional code and analysis from the single-cell integration benchmarking project☆68Updated 2 years ago
- ☆18Updated 4 years ago
- Transformer for One-Stop Interpretable Cell-type Annotation☆144Updated last year
- End-to-end analysis of spatial multi-omics data☆95Updated last week
- ☆55Updated last month
- PRnet is a flexible and scalable perturbation-conditioned generative model predicting transcriptional responses to unseen complex perturb…☆64Updated 11 months ago