siyuh / SquidiffLinks
☆94Updated last month
Alternatives and similar repositories for Squidiff
Users that are interested in Squidiff are comparing it to the libraries listed below
Sorting:
- Python agent-based model tool for inference, visualization and analysis of cell-cell communication from single-cell data☆34Updated 3 weeks ago
- End-to-end analysis of spatial multi-omics data☆101Updated last month
- A unified approach for integrating spatial and single-cell transcriptomics data by leveraging deep generative models☆74Updated last year
- ☆66Updated 5 months ago
- Code for evaluating single cell foundation models scBERT and scGPT☆46Updated last year
- Deep Transfer Learning of Drug Sensitivity by Integrating Bulk and Single-cell RNA-seq data☆58Updated last year
- ☆59Updated this week
- Single-cell perturbation effects prediction benchmark☆42Updated 5 months ago
- Repository for paper scMulan: a multitask generative pre-trained language model for single-cell analysis.☆61Updated last year
- ☆15Updated 7 months ago
- Repository for Nicheformer: a foundation model for single-cell and spatial omics☆135Updated last month
- Additional code and analysis from the single-cell integration benchmarking project☆71Updated 3 years ago
- ☆50Updated 9 months ago
- Single-cell biological network inference using a heterogeneous graph transformer☆76Updated 10 months ago
- Transformer for One-Stop Interpretable Cell-type Annotation☆146Updated last year
- ☆46Updated 5 months ago
- ☆49Updated 9 months ago
- ☆19Updated last year
- ☆72Updated 4 months ago
- ☆87Updated 2 years ago
- Deciphering cell-cell communication from spatially resolved transcriptomic data at single-cell resolution with subgraph-based attentional…☆27Updated last year
- ☆90Updated 4 months ago
- ☆30Updated 2 years ago
- scDesign3 generates realistic in silico data for multimodal single-cell and spatial omics☆111Updated 2 months ago
- Adversarial domain translation networks for integrating large-scale atlas-level single-cell datasets☆33Updated 2 years ago
- ☆89Updated last year
- Deciphering driver regulators of cell fate decisions from single-cell RNA-seq data☆26Updated last year
- Deep fusion of spatial transcriptomics and histology images for interpretable high-definition embedding mapping☆11Updated 3 months ago
- ☆15Updated 5 months ago
- a computational framework to identify and characterize cell niches from spatial omics data at single-cell resolution☆45Updated 4 months ago