A comprehensive tool to infer TF-centred, spatial gene regulatory networks for the spatially resolved transcriptomic data.
☆21Apr 27, 2025Updated 11 months ago
Alternatives and similar repositories for SpaGRN
Users that are interested in SpaGRN are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- A tool to use stereo-seq GEM and ssDNA to generate single-cell and 3D spatial resolved transtriptomics data☆14Oct 12, 2023Updated 2 years ago
- Calibrated clustering with artificial variables to avoid over-clustering in single-cell RNA-sequencing☆19Nov 18, 2025Updated 4 months ago
- Gene orthologs for model organisms in a tidy data format☆14Sep 29, 2022Updated 3 years ago
- ☆15Aug 22, 2024Updated last year
- ☆13Nov 29, 2022Updated 3 years ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- VT3D: a versatile Visualization Toolbox for 3D spatial transcriptomics atlas☆14Nov 6, 2024Updated last year
- An R package to implement Differential Gene Set Enrichment Analysis (DGSEA): A statistical approach to quantify the relative enrichment o…☆14Apr 12, 2023Updated 2 years ago
- A scaffold assembling pipeline for stLFR reads.☆14Mar 15, 2021Updated 5 years ago
- Single-cell RNA-seq data-based inference of multilayer inter- and intra-cellular signaling networks☆30Aug 16, 2021Updated 4 years ago
- ☆36Feb 20, 2026Updated last month
- Serves a web interface and RESTful API for reference genome assets.☆12Feb 25, 2026Updated last month
- Metagenomics Taxonomic Reads Assembly Single-Species☆16May 25, 2023Updated 2 years ago
- SpaceX: Gene Co-expression Network Estimation for Spatial Transcriptomics☆20Apr 5, 2023Updated 2 years ago
- SRY: an effective method for sorting long-read of sex-limited (Y or W) chromosome.☆19Aug 1, 2023Updated 2 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting with the flexibility to host WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Cloudways by DigitalOcean.
- This is an updated mirror of the original PacBio Read Simulator☆39Mar 30, 2018Updated 7 years ago
- HAST: Haplotype-Resolved Assembly for Synthetic Long Reads Using A Trio-Binning Strategy☆18Apr 20, 2023Updated 2 years ago
- Flexible Integration of single-cell RNA-sequencing data for large-scale Multi-tissue cell atlas datasets☆13Sep 20, 2022Updated 3 years ago
- A pipeline to de novo assemble the stLFR reads using Supernova Assembler☆20Feb 22, 2023Updated 3 years ago
- ☆14Apr 2, 2025Updated 11 months ago
- This repository contains the CellTag data analysis R package to support clone calling and lineage reconstruction.☆21Oct 19, 2022Updated 3 years ago
- Python binding for KCP☆28Mar 27, 2021Updated 5 years ago
- ☆145Mar 20, 2026Updated last week
- This repository contains all DeepCLIP Python code☆11May 30, 2024Updated last year
- Wordpress hosting with auto-scaling on Cloudways • AdFully Managed hosting built for WordPress-powered businesses that need reliable, auto-scalable hosting. Cloudways SafeUpdates now available.
- Learning meaningful representations of genes☆21Jul 7, 2025Updated 8 months ago
- rnalib: a python-based transcriptomics library☆11Jan 23, 2026Updated 2 months ago
- inferring regulatory cellular dynamics☆67Jan 13, 2026Updated 2 months ago
- Codes used in LISTA project.☆15Apr 17, 2024Updated last year
- An R package to write logs.☆15Mar 6, 2026Updated 3 weeks ago
- Data analysis for the moscot-framework project☆20Feb 27, 2026Updated last month
- A fast and programmatic MELODI☆17Apr 16, 2024Updated last year
- Network Visualization using both GUI and Programming☆29May 27, 2025Updated 10 months ago
- Reproducible analyses for the NicheCompass manuscript☆13Jul 3, 2025Updated 8 months ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- Converts 'MultiQC' Reports into Tidy Data Frames☆19Apr 1, 2024Updated last year
- mouse_fullStack_annotations☆13Jun 29, 2023Updated 2 years ago
- ☆23Jul 9, 2025Updated 8 months ago
- ☆58Jan 2, 2024Updated 2 years ago
- Inclusive and efficient quantification of labeling and splicing RNAs for time-resolved metabolic labeling based scRNA-seq experiments☆19Aug 12, 2025Updated 7 months ago
- ☆28Aug 21, 2024Updated last year
- Spatial direct messaging detected by bivariate Moran☆31Jul 16, 2025Updated 8 months ago