BGI-Qingdao / SpaGRNLinks
A comprehensive tool to infer TF-centred, spatial gene regulatory networks for the spatially resolved transcriptomic data.
☆18Updated 8 months ago
Alternatives and similar repositories for SpaGRN
Users that are interested in SpaGRN are comparing it to the libraries listed below
Sorting:
- Analysis methods for analysing single cell RNA-seq data; particularly with the goal of checking if tentative clusters of cells are signif…☆38Updated 2 years ago
- ☆23Updated 3 months ago
- Code to calculate the Splicing Z Score (SpliZ) for single cell RNA-seq splicing analysis☆35Updated 4 years ago
- Epigenetic cell-type deconvolution from Single-Cell Omic Reference profiles☆32Updated 9 months ago
- Detection of allele-specific subclonal copy number alterations from single-cell transcriptomic data.☆38Updated last month
- ☆53Updated last year
- Mitochondrial Alteration Enrichment and Genome Analysis Toolkit☆24Updated last year
- cell type specific, trait-associated gene regulation☆29Updated 9 months ago
- Flexible Integration of single-cell RNA-sequencing data for large-scale Multi-tissue cell atlas datasets☆13Updated 3 years ago
- Matrix factorization model for interpreting single cell gene expression in biologically heterogeneous data☆22Updated last year
- ☆20Updated 2 years ago
- ☆32Updated 11 months ago
- Paired Insertion Counting for snATAC-seq data☆17Updated 7 months ago
- Molecular interactions inference from single-cell multi-omics data☆30Updated 2 months ago
- ☆17Updated last year
- CellWalkR: An R Package for integrating single-cell and bulk data to resolve regulatory elements☆21Updated 3 months ago
- Python package with CLI for the analysis of single cell methylation data.☆18Updated last year
- A pipeline for identifying indel derived neoantigens using RNA-Seq data☆30Updated 3 years ago
- ☆29Updated 2 years ago
- Inferring allele-specific copy number aberrations and tumor phylogeography from spatially resolved transcriptomics☆45Updated 4 months ago
- Spatial omics analysis toolbox☆18Updated last year
- SpaceX: Gene Co-expression Network Estimation for Spatial Transcriptomics☆20Updated 2 years ago
- ☆35Updated 10 months ago
- ☆53Updated 2 years ago
- R package for analysing meaningful differences in the numbers of cell populations from single-cell phenotypic data☆22Updated 3 months ago
- MeDuSA is a fine-resolution cellular deconvolution method that leverages scRNA-seq data as a reference to estimate cell-state abundance i…☆43Updated 10 months ago
- An R implementation of the Gene Frequency - Inverse Cell Frequency method for single cell data normalization☆18Updated 2 years ago
- ☆39Updated 4 months ago
- Methods to use SNPs or gene expression to classify single cell RNAseq to reference profiles☆30Updated 5 years ago
- ☆23Updated last year