BGI-Qingdao / SpaGRNLinks
A comprehensive tool to infer TF-centred, spatial gene regulatory networks for the spatially resolved transcriptomic data.
☆13Updated 2 months ago
Alternatives and similar repositories for SpaGRN
Users that are interested in SpaGRN are comparing it to the libraries listed below
Sorting:
- ☆20Updated last year
- cell type specific, trait-associated gene regulation☆27Updated 2 months ago
- Mitochondrial Alteration Enrichment and Genome Analysis Toolkit☆19Updated last year
- ☆32Updated 5 months ago
- SCRIP(Single Cell Regulatory network Inference using ChIP-seq) is a tool for evaluating the binding enrichment of specific TR at single-c…☆20Updated 11 months ago
- Code to calculate the Splicing Z Score (SpliZ) for single cell RNA-seq splicing analysis☆33Updated 3 years ago
- ☆19Updated this week
- TF analysis from epigenetic and Hi-C data☆17Updated 2 months ago
- Toolkit for single-cell copy number analysis☆23Updated last week
- Stitch multiple Visium slides together☆16Updated last year
- ☆52Updated 2 years ago
- ☆14Updated 4 months ago
- ☆49Updated 10 months ago
- Flexible Integration of single-cell RNA-sequencing data for large-scale Multi-tissue cell atlas datasets☆12Updated 2 years ago
- Detection of allele-specific subclonal copy number alterations from single-cell transcriptomic data.☆36Updated last month
- scNOVA : Single-Cell Nucleosome Occupancy and genetic Variation Analysis☆11Updated last year
- Supporting material for publication: "Ovarian cancer mutational processes drive site-specific immune evasion"☆22Updated last month
- Cell-type Relationship Analysis Workflow Done Across Distances☆32Updated 2 weeks ago
- single-cell clustering based on alternative splicing landscapes☆21Updated last year
- MACA: Marker-based automatic cell-type annotation for single cell expression data☆25Updated last year
- Analysis pipeline for our circSC manuscript☆13Updated 3 years ago
- Pipeline for Universal Mapping of ATAC-seq☆25Updated last year
- SIB/Scilifelab autumn school in single cell omics 2019.☆22Updated 5 years ago
- cell type deconvolution for multi-condition bulk RNA-seq data☆26Updated 3 years ago
- Tools for analyzing Slide-seq data☆31Updated last year
- SpaceX: Gene Co-expression Network Estimation for Spatial Transcriptomics☆19Updated 2 years ago
- Easy and comprehensive biological network reconstruction and analysis☆29Updated 8 months ago
- Matrix factorization model for interpreting single cell gene expression in biologically heterogeneous data☆21Updated last year
- R package of CSOmap(developing☆14Updated 3 years ago
- Trajectory inference across multiple conditions with condiments: differential topology, progression, differentiation, and expression☆28Updated 6 months ago