yuzhenmao / ScRATLinks
Implementation of Phenotype prediction from single-cell RNA-seq data using attention-based neural networks (Bioinformatics).
☆11Updated 11 months ago
Alternatives and similar repositories for ScRAT
Users that are interested in ScRAT are comparing it to the libraries listed below
Sorting:
- Single-cell biological network inference using a heterogeneous graph transformer☆73Updated 4 months ago
- ☆52Updated 7 months ago
- scDiff: A General Single-Cell Analysis Framework via Conditional Diffusion Generative Models☆28Updated 11 months ago
- ☆55Updated last year
- ☆82Updated 2 years ago
- ☆59Updated 10 months ago
- ☆38Updated 2 years ago
- ☆16Updated 2 months ago
- scNODE: Generative Model for Temporal Single Cell Transcriptomic Data Prediction☆22Updated 9 months ago
- Matilda is a multi-task framework for learning from single-cell multimodal omics data. Matilda leverages the information from the multi-m…☆21Updated last month
- ☆29Updated 2 years ago
- ☆14Updated 3 weeks ago
- ☆17Updated 3 years ago
- ☆49Updated 4 months ago
- Deep Transfer Learning of Drug Sensitivity by Integrating Bulk and Single-cell RNA-seq data☆54Updated 11 months ago
- A Deep Learning-Based Model for the integration, cross-dataset cross-modality generation, self augmentation and matched multi-omics simul…☆15Updated 4 months ago
- Deconvoluting Spatial Transcriptomics Data through Graph-based Artificial Intelligence☆39Updated 2 years ago
- Learning meaningful representations of genes☆19Updated last week
- Codes for paper: Evaluating the Utilities of Large Language Models in Single-cell Data Analysis.☆71Updated 3 weeks ago
- Deciphering driver regulators of cell fate decisions from single-cell RNA-seq data☆24Updated 8 months ago
- scAce: an adaptive embedding and clustering method for scRNA-seq data☆11Updated last year
- scPRAM accurately predicts single-cell gene expression perturbation response based on attention mechanism☆15Updated 8 months ago
- Evaluation suite for transcriptomic perturbation effect prediction models. Includes support for single-cell foundation models.☆26Updated 2 weeks ago
- Python agent-based model tool for inference, visualization and analysis of cell-cell communication from single-cell data☆31Updated 3 months ago
- ☆33Updated 2 months ago
- Codes for paper: scELMo: Embeddings from Language Models are Good Learners for Single-cell Data Analysis☆13Updated 6 months ago
- ☆80Updated 11 months ago
- ☆15Updated last year
- STAligner is a tool for alignment and integration of spatially resolved transcriptomics data.☆41Updated last year
- Code for evaluating single cell foundation models scBERT and scGPT☆44Updated 10 months ago