Implementation for Phenotype prediction from single-cell RNA-seq data using attention-based neural networks (Bioinformatics 2024).
☆13Jul 15, 2024Updated last year
Alternatives and similar repositories for ScRAT
Users that are interested in ScRAT are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- scAce: an adaptive embedding and clustering method for scRNA-seq data☆12Sep 8, 2023Updated 2 years ago
- Matilda is a multi-task framework for learning from single-cell multimodal omics data. Matilda leverages the information from the multi-m…☆22Jun 6, 2025Updated last year
- A Guide to the Analysis of Spatial Transcriptomics☆12Jul 29, 2024Updated last year
- ☆12Nov 19, 2023Updated 2 years ago
- PAST: a Prior-based self-Attention method for Spatial Transcriptomics☆13Mar 1, 2025Updated last year
- Open source password manager - Proton Pass • AdSecurely store, share, and autofill your credentials with Proton Pass, the end-to-end encrypted password manager trusted by millions.
- Research Paper: "Graph Contrastive Learning as a Versatile Foundation for Advanced scRNA-seq Data Analysis"☆10Nov 20, 2024Updated last year
- A pipeline for scRNA-seq data analysis☆16Mar 26, 2025Updated last year
- Batch alignment of single-cell transcriptomics data using deep metric learning☆25Feb 5, 2024Updated 2 years ago
- Diffusion model for gene regulatory network inference.☆29Mar 20, 2026Updated 2 months ago
- Code to go along with https://doi.org/10.1016/j.cell.2022.09.010☆21Mar 16, 2022Updated 4 years ago
- A Python package for jointly analyzing multimodal single-cell sequencing data☆26Jan 17, 2025Updated last year
- Protocols for running MD simulations in Gromacs☆10Jun 18, 2024Updated last year
- Supporting Information for "Prediction of Organic Compound Aqueous Solubility Using Interpretable Machine Learning"☆13Jun 5, 2023Updated 3 years ago
- A de novo prediction tool of chromatin accessible regions for plant genomes☆10Aug 12, 2021Updated 4 years ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- Robust Integration of Single-Cell Cytometry Datasets☆35Apr 29, 2026Updated last month
- Vector representations of gene co-expression in single cell RNAseq.☆37Jun 7, 2026Updated last week
- Latent Diffusion Model for DNA Sequence Generation☆34Oct 30, 2024Updated last year
- Automatic R pipeline for FGSEA and classic enrichment (GO, KEGG, Reactome, Hallmark)☆18Oct 30, 2025Updated 7 months ago
- 5G通信资源分配算法☆12Jun 19, 2020Updated 5 years ago
- ☆13Dec 1, 2024Updated last year
- Single-cell dubious embedding detector (scDED): a statistical method for detecting dubious non-linear embeddings☆49May 14, 2025Updated last year
- Extendable Admin UI☆11Jun 20, 2022Updated 3 years ago
- Single-cell biological network inference using a heterogeneous graph transformer☆77Feb 24, 2025Updated last year
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- TIGS (Tumor Immunogenicity Score) project https://doi.org/10.7554/eLife.49020☆33Sep 16, 2021Updated 4 years ago
- Predict RNA velocity through deep learning☆72Dec 12, 2023Updated 2 years ago
- Robust identification of perturbed cell types in single-cell RNA-seq data☆41Nov 10, 2025Updated 7 months ago
- a simply crawler framework☆12Jun 5, 2023Updated 3 years ago
- Integrate Analysis and Visualization for Bioinformatic Enrichment Analyzer☆83Dec 16, 2023Updated 2 years ago
- ☆86May 23, 2026Updated 3 weeks ago
- A comprehensive computational pipeline that bridges single-cell genomics and cheminformatics to accelerate Alzheimer's Disease research. …☆12Jul 13, 2025Updated 11 months ago
- Supplementary information for "Population-level comparisons of gene regulatory networks modeled on high-throughput single-cell transcript…☆11Jan 15, 2024Updated 2 years ago
- ☆14Jan 24, 2024Updated 2 years ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- 机器学习(Machine Learning)、深度学习(Deep Learning)、对抗神经网络(GAN），图神经网络（GNN），NLP，大数据相关的发展路书(roadmap), 并附海量源码（python，pytorch）带大家消化基本知识点，突破面试，完成从新手到合格…☆10Feb 25, 2020Updated 6 years ago
- ☆15Apr 9, 2026Updated 2 months ago
- Official Code for Learning to Sample Effective and Diverse Prompts for Text-to-Image Generation (CVPR 2025)☆14Apr 2, 2025Updated last year
- Porting of Protein Activity and Pathway Inference to single cell and Python.☆14Updated this week
- A deletion finder through re-aligning the whole soft-clipping read☆12Jul 2, 2016Updated 9 years ago
- Cross-platform data for sequencing-based spatial transcriptomics benchmarking☆13Oct 26, 2023Updated 2 years ago
- unimol_tools: a easy-use & auto-ml molecule property prediction tool☆30Apr 8, 2026Updated 2 months ago