Alternatives and similar repositories for state

Users that are interested in state are comparing it to the libraries listed below

• ArcInstitute / arc-virtual-cell-atlas
  Arc Virtual Cell Atlas
  ☆448Updated 6 months ago
• biomap-research / scFoundation
  ☆369Updated 9 months ago
• theislab / single-cell-transformer-papers
  ☆335Updated 5 months ago
• snap-stanford / GEARS
  GEARS is a geometric deep learning model that predicts outcomes of novel multi-gene perturbations
  ☆309Updated 9 months ago
• snap-stanford / UCE
  UCE is a zero-shot foundation model for single-cell gene expression data
  ☆224Updated 8 months ago
• Perturbation-Response-Prediction / PRnet
  PRnet is a flexible and scalable perturbation-conditioned generative model predicting transcriptional responses to unseen complex perturb…
  ☆66Updated 11 months ago
• OmicsML / awesome-foundation-model-single-cell-papers
  ☆353Updated this week
• jkobject / geneformer
  ☆84Updated 3 months ago
• Boom5426 / Awesome-Virtual-Cell
  Awesome-AI-Virtual-Cell
  ☆127Updated this week
• yiqunchen / GenePT
  ☆295Updated last year
• apeterswu / Awesome-Bio-Foundation-Models
  A collection of awesome bio-foundation models, including protein, RNA, DNA, gene, single-cell, and so on.
  ☆268Updated 5 months ago
• ml4bio / RNA-FM
  Nature Methods: RNA foundation model (together with RhoFold)
  ☆317Updated 5 months ago
• PharMolix / LangCell
  Code for "LangCell: Language-Cell Pre-training for Cell Identity Understanding".
  ☆63Updated 10 months ago
• ArcInstitute / cell-eval
  Comprehensive suite for evaluating perturbation prediction models
  ☆106Updated last week
• Genentech / SpatialAgent
  ☆132Updated 7 months ago
• theislab / chemCPA
  Code for "Predicting Cellular Responses to Novel Drug Perturbations at a Single-Cell Resolution", NeurIPS 2022.
  ☆129Updated 9 months ago
• TencentAILabHealthcare / scBERT
  ☆334Updated last year
• Genentech / BRAID
  BRAID is a department within Genentech dedicated to advancing biological and clinical sciences through artificial intelligence.
  ☆217Updated 3 months ago
• xianglin226 / Benchmarking-Single-Cell-Perturbation
  Single-Cell (Perturbation) Model Library
  ☆81Updated 2 months ago
• idekerlab / DrugCell
  A visible neural network model for drug response prediction
  ☆148Updated 2 years ago
• mims-harvard / PINNACLE
  Contextual AI models for single-cell protein biology
  ☆91Updated 9 months ago
• calico / borzoi
  RNA-seq prediction with deep convolutional neural networks.
  ☆202Updated 2 months ago
• LinearDesignSoftware / LinearDesign
  The LinearDesign mRNA design software.
  ☆193Updated last year
• xCompass-AI / GeneCompass
  GeneCompass
  ☆98Updated last month
• Genentech / gReLU
  gReLU is a python library to train, interpret, and apply deep learning models to DNA sequences.
  ☆299Updated 2 weeks ago
• TencentAILabHealthcare / DNAGPT
  ☆45Updated 2 years ago
• ml4bio / RhoFold
  Nature Methods: RhoFold+, Accurate RNA 3D structure prediction using a language model-based deep learning approach
  ☆194Updated 5 months ago
• OATML-Markslab / EVE
  Official repository for the paper "Large-scale clinical interpretation of genetic variants using evolutionary data and deep learning". Jo…
  ☆185Updated last year
• MAGICS-LAB / DNABERT_2
  [ICLR 2024] DNABERT-2: Efficient Foundation Model and Benchmark for Multi-Species Genome
  ☆435Updated 3 months ago
• helicalAI / helical
  A framework for state-of-the-art pre-trained bio foundation models on genomics and transcriptomics modalities.
  ☆166Updated this week