Alternatives and similar repositories for state

Users that are interested in state are comparing it to the libraries listed below

• ArcInstitute / arc-virtual-cell-atlas
  Arc Virtual Cell Atlas
  ☆415Updated 4 months ago
• jkobject / geneformer
  ☆77Updated 3 weeks ago
• biomap-research / scFoundation
  ☆355Updated 7 months ago
• Perturbation-Response-Prediction / PRnet
  PRnet is a flexible and scalable perturbation-conditioned generative model predicting transcriptional responses to unseen complex perturb…
  ☆60Updated 9 months ago
• snap-stanford / GEARS
  GEARS is a geometric deep learning model that predicts outcomes of novel multi-gene perturbations
  ☆291Updated 7 months ago
• theislab / single-cell-transformer-papers
  ☆325Updated 3 months ago
• Boom5426 / Awesome-Virtual-Cell
  Awesome-AI-Virtual-Cell
  ☆93Updated this week
• theislab / chemCPA
  Code for "Predicting Cellular Responses to Novel Drug Perturbations at a Single-Cell Resolution", NeurIPS 2022.
  ☆123Updated 7 months ago
• vandijklab / cell2sentence
  Cell2Sentence: Teaching Large Language Models the Language of Biology
  ☆195Updated 2 months ago
• snap-stanford / UCE
  UCE is a zero-shot foundation model for single-cell gene expression data
  ☆218Updated 6 months ago
• mims-harvard / PINNACLE
  Contextual AI models for single-cell protein biology
  ☆88Updated 7 months ago
• OmicsML / awesome-foundation-model-single-cell-papers
  ☆329Updated 3 weeks ago
• xianglin226 / Benchmarking-Single-Cell-Perturbation
  Single-Cell (Perturbation) Model Library
  ☆69Updated 2 weeks ago
• PharMolix / LangCell
  Code for "LangCell: Language-Cell Pre-training for Cell Identity Understanding".
  ☆62Updated 8 months ago
• apeterswu / Awesome-Bio-Foundation-Models
  A collection of awesome bio-foundation models, including protein, RNA, DNA, gene, single-cell, and so on.
  ☆254Updated 3 months ago
• Genentech / SpatialAgent
  ☆125Updated 5 months ago
• yiqunchen / GenePT
  ☆282Updated last year
• ArcInstitute / cell-eval
  Comprehensive suite for evaluating perturbation prediction models
  ☆78Updated this week
• xCompass-AI / GeneCompass
  GeneCompass
  ☆89Updated 3 months ago
• ml4bio / RNA-FM
  Nature Methods: RNA foundation model (together with RhoFold)
  ☆301Updated 3 months ago
• OmicsML / CellPLM
  Official repo for CellPLM: Pre-training of Cell Language Model Beyond Single Cells.
  ☆92Updated last year
• idekerlab / DrugCell
  A visible neural network model for drug response prediction
  ☆149Updated 2 years ago
• wukevin / tcr-bert
  Large language modeling applied to T-cell receptor (TCR) sequences.
  ☆56Updated 3 years ago
• EperLuo / scDiffusion
  A model developed for the generation of scRNA-seq data
  ☆69Updated 6 months ago
• TencentAILabHealthcare / DNAGPT
  ☆43Updated 2 years ago
• CatIIIIIIII / RNAErnie
  Official implement of paper "Multi-purpose RNA Language Modeling with Motif-aware Pre-training and Type-guided Fine-tuning"
  ☆51Updated 11 months ago
• Genentech / BRAID
  BRAID is a department within Genentech dedicated to advancing biological and clinical sciences through artificial intelligence.
  ☆211Updated last month
• dohlee / chromoformer
  The official code implementation for Chromoformer in PyTorch. (Lee et al., Nature Communications. 2022)
  ☆36Updated 2 years ago
• genbio-ai / ModelGenerator
  AIDO.ModelGenerator is a software stack powering the development of an AI-driven Digital Organism (AIDO) by enabling researchers to adapt…
  ☆94Updated this week
• OATML-Markslab / EVE
  Official repository for the paper "Large-scale clinical interpretation of genetic variants using evolutionary data and deep learning". Jo…
  ☆181Updated last year