ArcInstitute / stateLinks
State is a machine learning model that predicts cellular perturbation response across diverse contexts
☆409Updated this week
Alternatives and similar repositories for state
Users that are interested in state are comparing it to the libraries listed below
Sorting:
- Arc Virtual Cell Atlas☆424Updated 5 months ago
- GEARS is a geometric deep learning model that predicts outcomes of novel multi-gene perturbations☆293Updated 8 months ago
- Cell2Sentence: Teaching Large Language Models the Language of Biology☆199Updated 3 months ago
- ☆328Updated 4 months ago
- ☆79Updated last month
- ☆356Updated 8 months ago
- PRnet is a flexible and scalable perturbation-conditioned generative model predicting transcriptional responses to unseen complex perturb…☆62Updated 9 months ago
- UCE is a zero-shot foundation model for single-cell gene expression data☆221Updated 7 months ago
- ☆332Updated this week
- Nature Methods: RNA foundation model (together with RhoFold)☆309Updated 4 months ago
- Awesome-AI-Virtual-Cell☆107Updated last week
- Comprehensive suite for evaluating perturbation prediction models☆89Updated this week
- Official implement of paper "Multi-purpose RNA Language Modeling with Motif-aware Pre-training and Type-guided Fine-tuning"☆53Updated last year
- Code for "Predicting Cellular Responses to Novel Drug Perturbations at a Single-Cell Resolution", NeurIPS 2022.☆124Updated 8 months ago
- Contextual AI models for single-cell protein biology☆88Updated 7 months ago
- ☆288Updated last year
- ☆127Updated 6 months ago
- Single-Cell (Perturbation) Model Library☆73Updated last month
- Code for "LangCell: Language-Cell Pre-training for Cell Identity Understanding".☆62Updated 9 months ago
- gReLU is a python library to train, interpret, and apply deep learning models to DNA sequences.☆272Updated this week
- RNA-seq prediction with deep convolutional neural networks.☆198Updated last month
- A framework for state-of-the-art pre-trained bio foundation models on genomics and transcriptomics modalities.☆156Updated last week
- A visible neural network model for drug response prediction☆148Updated 2 years ago
- BRAID is a department within Genentech dedicated to advancing biological and clinical sciences through artificial intelligence.☆215Updated last month
- GeneCompass☆89Updated 3 months ago
- A collection of awesome bio-foundation models, including protein, RNA, DNA, gene, single-cell, and so on.☆257Updated 4 months ago
- Orthrus is a mature RNA model for RNA property prediction. It uses a mamba encoder backbone, a variant of state-space models specifical…☆77Updated last month
- Official repository for the paper "Large-scale clinical interpretation of genetic variants using evolutionary data and deep learning". Jo…☆183Updated last year
- Nature Methods: RhoFold+, Accurate RNA 3D structure prediction using a language model-based deep learning approach☆180Updated 4 months ago