☆64Aug 6, 2025Updated last year
Alternatives and similar repositories for CoVarNet
Users that are interested in CoVarNet are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- SIDISH: Semi-supervised Iterative Deep Learning for Identifying Single-cell High-risk Populations☆26Jul 30, 2026Updated last month
- A computational framework☆20Jul 23, 2026Updated 2 months ago
- Calibrated clustering with artificial variables to avoid over-clustering in single-cell RNA-sequencing☆21Nov 18, 2025Updated 10 months ago
- Methods to discover gene programs on single-cell data☆210Updated this week
- ☆12May 24, 2024Updated 2 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- R tools for analysis and visualization of single-cell subclustering data☆19Aug 28, 2026Updated 3 weeks ago
- Implements *CellAnnotator (aka *CAT/starCAT), annotating scRNA-Seq with predefined gene expression programs☆111Updated this week
- ☆18Mar 27, 2023Updated 3 years ago
- Repo with analysis code for the vascular atlas paper☆10Nov 22, 2024Updated last year
- ☆34Feb 25, 2025Updated last year
- ☆14Jun 11, 2023Updated 3 years ago
- An R package for fast topic inference to identify tissue architecture in multiplexed images☆18Jun 5, 2026Updated 3 months ago
- CytoTRACE 2 is an interpretable AI method for predicting cellular potency and absolute developmental potential from scRNA-seq data.☆266Jul 8, 2026Updated 2 months ago
- STARTRAC(Single T-cell Analysis by Rna-seq and Tcr TRACking)☆126Apr 26, 2025Updated last year
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- simpler single cell RNAseq data Visualization☆12Feb 28, 2025Updated last year
- Code for spatial subclone paper☆18Jan 23, 2025Updated last year
- Quantifying metabolism activity at the single-cell resolution☆197Aug 20, 2026Updated last month
- Construct Tumor Transition Zone Microenvironment☆61Jun 25, 2025Updated last year
- ☆16Feb 12, 2026Updated 7 months ago
- ☆46Nov 26, 2025Updated 9 months ago
- scTM: A package for topic modelling in transcriptomics data☆27May 1, 2024Updated 2 years ago
- Network analyses of single cell-based digital twins for personalized treatment of inflammatory disease☆17Mar 23, 2024Updated 2 years ago
- Use hodge decomposition for trajectory analysis☆26May 11, 2026Updated 4 months ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Publically accessible code for DIISCO method☆13Oct 15, 2025Updated 11 months ago
- Gene group activity utility functions for Scanpy☆118Dec 21, 2024Updated last year
- Code for major analyses in "Spatially resolved multi-omics of human metabolic dysfunction-associated steatotic liver disease" paper by Zi…☆16Nov 25, 2025Updated 9 months ago
- R Package for Single-Cell Dataset Processing and Visualization☆65Jul 26, 2021Updated 5 years ago
- Profile purification of single-cell spatial transcriptomics data☆58Jun 29, 2026Updated 2 months ago
- Scissor package☆277May 10, 2024Updated 2 years ago
- A ggplot extension for drawing smooth non-convex circles around a set of points.☆23May 20, 2024Updated 2 years ago
- Robust and scalable single-cell signature scoring☆29Updated this week
- ☆18Feb 20, 2025Updated last year
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- ☆16Sep 29, 2023Updated 2 years ago
- Genotype-Neighborhood Associations: A tool for identifying genetic variant associations to the abundance of cell states in single-cell d…☆18Oct 5, 2024Updated last year
- ☆62Aug 8, 2024Updated 2 years ago
- Hotspot cluster distance analysis in spatial transcriptomic data☆37Feb 10, 2025Updated last year
- ☆13Mar 5, 2024Updated 2 years ago
- ☆36Oct 22, 2025Updated 11 months ago
- These are scripts for pan-cacner B cells analyses.☆61Jul 22, 2024Updated 2 years ago