Alternatives and similar repositories for CoVarNet

Users that are interested in CoVarNet are comparing it to the libraries listed below

• kaifuchenlab / MEBOCOST
  ☆25Updated last week
• Chuxj / CRC-atlas
  ☆27Updated last year
• BKI-immuno-KNS / MANAscore
  A minimal gene set characterizes multiple classes of tumor-specific TIL among different cancer types
  ☆11Updated 4 months ago
• jumphone / Vector
  Unsupervised Inference of Developmental Directions for Single Cells
  ☆22Updated last year
• ChanLab-UTSW / BreastCancer_Integrated
  ☆30Updated 4 months ago
• phillipnicol / scDist
  Robust identification of perturbed cell types in single-cell RNA-seq data
  ☆31Updated 7 months ago
• liziyie / Onco-fetal-CAF-in-HCC
  ☆20Updated last year
• yanailab / PanCancer
  Data available at: https://www.dropbox.com/sh/jh4s57kgbb0rnxe/AABoMK466cGc1OKsOuFN10wca?dl=0 and https://nyulangone-my.sharepoint.com//g/…
  ☆31Updated 2 years ago
• JerryZhang-1222 / starTracer
  A High Effect Marker Gene Search Tool for Single-cell RNA-seq Analysis
  ☆32Updated 10 months ago
• KramannLab / visium_heart
  Spatial transcriptomics of heart tissue
  ☆22Updated 3 years ago
• Teichlab / Genes2Genes
  Aligning gene expression trajectories of single-cell reference and query systems
  ☆69Updated 9 months ago
• bio-Pixel / panVC
  ☆50Updated last year
• campbio / decontX
  Methods for decontamination of single cell data
  ☆47Updated 5 months ago
• chloelulu / scMayoMap
  ☆22Updated last year
• hernet / transcriptional-map-nk
  We describe a transcriptional reference map of human natural killer (NK) cells based on analysis of scRNA-seq data from both blood and ti…
  ☆11Updated 9 months ago
• christophhmayr / 2023_Mayr
  Code for the spatial transcriptomic paper on IPF lungs
  ☆18Updated last year
• FloWuenne / scFunctions
  Functions for single cell data analysis
  ☆32Updated 4 years ago
• jlaffy / scalop
  Single Cell Analysis Operations
  ☆13Updated 4 months ago
• genecell / COSG
  Accurate and fast cell marker gene identification with COSG
  ☆46Updated 3 months ago
• Yelab2020 / Cottrazm
  Construct Tumor Transition Zone Microenvironment
  ☆46Updated 3 weeks ago
• guangchunhan / LUAD_Code
  ☆21Updated last year
• aet21 / SCENT
  Estimation of Single-Cell Potency with Single Cell Entropy
  ☆41Updated 2 years ago
• Teichlab / HCA_Heart_ver2
  ☆37Updated 2 years ago
• YangJAT / HCA
  Hierarchical Cell Annotation
  ☆21Updated 8 months ago
• compbioNJU / scPDAC
  R code used to analyze single cell PDAC data
  ☆38Updated last year
• tiroshlab / Spatial_Glioma
  Code for major analyses in "Integrative spatial analysis reveals a multi-layered organization of glioblastoma" paper
  ☆48Updated 6 months ago
• Teichlab / vascular_atlas
  Repo with analysis code for the vascular atlas paper
  ☆9Updated 7 months ago
• PaulingLiu / metaICB
  ☆22Updated 2 years ago
• bioinfo-biols / SEVtras
  sEV-containing droplet identification in scRNA-seq data (SEVtras)
  ☆26Updated 4 months ago
• Fraternalilab / sciCSR
  Single-Cell Inference of Class Switch Recombination
  ☆19Updated 3 months ago