bowang-lab / DeepVeloLinks
☆46Updated last year
Alternatives and similar repositories for DeepVelo
Users that are interested in DeepVelo are comparing it to the libraries listed below
Sorting:
- Predict RNA velocity through deep learning☆71Updated last year
- Python package for analysis of multiomic single cell RNA-seq and ATAC-seq.☆66Updated 4 months ago
- Single cell omics biology annotations☆50Updated 7 months ago
- Context specific and dynamic gene regulatory network reconstruction and analysis☆123Updated last week
- R implementation of GeneTrajectory☆65Updated last year
- Python implementation of Milo for differential abundance testing on KNN graph☆76Updated 9 months ago
- User-friendly tool to infer cell-cell interactions and communication from gene expression of interacting proteins☆67Updated last month
- DIALOGUE is a dimensionality reduction method that uses cross-cell-type associations to identify multicellular programs (MCPs) and map th…☆115Updated last year
- Multi-omic velocity inference☆113Updated last year
- Nextflow pipeline for cross-species integration and assessment of single cell RNA-seq datasets☆41Updated 4 months ago
- spatial transcriptome, single cell☆71Updated 2 years ago
- Awesome list of tools and methods to perform spatial transcriptomic data analysis.☆46Updated 4 years ago
- Code to reproduce the analysis of "Decoding gene regulation in the mouse embryo using single-cell multi-omics""☆40Updated 3 years ago
- Quasilinear data representations for single-cell omics data analysis☆44Updated 2 years ago
- Non-parametric density inference for single-cell analysis.☆73Updated 6 months ago
- PhyloVelo, Phylogeny-based transcriptomic velocity of single cells☆43Updated 2 months ago
- Gene group activity utility functions for Scanpy☆97Updated 11 months ago
- Inference of RNA velocity modules for prediction of cell fates and integration with spatial and regulatory models.☆81Updated 8 months ago
- Additional code and analysis from the single-cell integration benchmarking project☆69Updated 2 years ago
- UniTVelo, Temporally Unified RNA Velocity for single cell trajectory inference☆27Updated last year
- Integrative and Reference-Informed Spatial Domain Detection for Spatial Transcriptomics☆41Updated 10 months ago
- TACCO: Transfer of Annotations to Cells and their COmbinations☆62Updated 3 months ago
- ☆46Updated last year
- ☆26Updated last year
- ☆45Updated 4 months ago
- Single-Cell Analysis of Inter-Individual Variability by Interpretable Tensor Decomposition☆62Updated last year
- Metacells - Single-cell RNA Sequencing Analysis☆116Updated last year
- SPROD: Spatial expression profiling de-noising☆36Updated 2 years ago
- scDesign3 generates realistic in silico data for multimodal single-cell and spatial omics☆109Updated 2 months ago
- Collection of computational tools for cell-cell communication inference for single-cell and spatially resolved omics☆56Updated 5 months ago