bowang-lab / DeepVelo
☆47Updated last year
Alternatives and similar repositories for DeepVelo:
Users that are interested in DeepVelo are comparing it to the libraries listed below
- Predict RNA velocity through deep learning☆69Updated last year
- Collection of computational tools for cell-cell communication inference for single-cell and spatially resolved omics☆46Updated 2 weeks ago
- Python package for analysis of multiomic single cell RNA-seq and ATAC-seq.☆61Updated last year
- Additional code and analysis from the single-cell integration benchmarking project☆61Updated 2 years ago
- Gene group activity utility functions for Scanpy☆74Updated 4 months ago
- Single cell omics biology annotations☆51Updated 2 weeks ago
- R implementation of GeneTrajectory☆58Updated last year
- DIALOGUE is a dimensionality reduction method that uses cross-cell-type associations to identify multicellular programs (MCPs) and map th…☆110Updated last year
- User-friendly tool to infer cell-cell interactions and communication from gene expression of interacting proteins☆60Updated 10 months ago
- Quasilinear data representations for single-cell omics data analysis☆42Updated 2 years ago
- Principal analysis code used in for analysis of single cell RNAseq of primary untreated colon cancer. As described in: "Spatially organiz…☆39Updated 3 years ago
- Snakemake pipeline that works with the scIB package to benchmark data integration methods.☆71Updated 3 months ago
- Python implementation of Milo for differential abundance testing on KNN graph☆68Updated 2 months ago
- SPROD: Spatial expression profiling de-noising☆36Updated last year
- Awesome list of tools and methods to perform spatial transcriptomic data analysis.☆40Updated 3 years ago
- Code to reproduce the analysis of "Decoding gene regulation in the mouse embryo using single-cell multi-omics""☆40Updated 2 years ago
- Accelerated, Python-only, single-cell integration benchmarking metrics☆58Updated last week
- This repository contains all code used for the Human Lung Cell Atlas project.☆49Updated last year
- ☆73Updated last week
- Scalable sequence-informed embedding of single-cell ATAC-seq data with CellSpace☆40Updated 3 months ago
- ☆50Updated 7 months ago
- Nextflow pipeline for cross-species integration and assessment of single cell RNA-seq datasets☆37Updated last year
- ☆39Updated last week
- Metacells - Single-cell RNA Sequencing Analysis☆104Updated 7 months ago
- spatial transcriptome, single cell☆68Updated 2 years ago
- ACTIONet single-cell analysis framework☆38Updated 7 months ago
- inferring regulatory cellular dynamics☆41Updated this week
- Spatial direct messaging detected by bivariate Moran☆26Updated this week
- ☆43Updated last year
- Methods to compute Local Inverse Simpson's Index (LISI)☆61Updated 3 years ago