☆51Feb 7, 2024Updated 2 years ago
Alternatives and similar repositories for DeepVelo
Users that are interested in DeepVelo are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- trajectory inference☆109Jan 27, 2025Updated last year
- UniTVelo, Temporally Unified RNA Velocity for single cell trajectory inference☆28Nov 12, 2024Updated last year
- Predict RNA velocity through deep learning☆73Dec 12, 2023Updated 2 years ago
- ☆10Sep 27, 2022Updated 3 years ago
- Publically accessible code for DIISCO method☆13Oct 15, 2025Updated 11 months ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- sEV-containing droplet identification in scRNA-seq data (SEVtras)☆27Feb 22, 2025Updated last year
- ☆18May 30, 2022Updated 4 years ago
- Aligning gene expression trajectories of single-cell reference and query systems☆93Jul 28, 2026Updated last month
- R toolkit for inference and analysis of pathway-mediated cell-cell communication chain from single-cell transcriptomics☆38Mar 10, 2025Updated last year
- R package: ConDecon is a clustering-independent deconvolution method for estimating cell abundances in bulk tissues using single-cell RNA…☆14Oct 17, 2024Updated last year
- Code for the paper `Multiscale topology classifies and quantifies cell types in subcellular spatial transcriptomics"☆13Apr 23, 2024Updated 2 years ago
- CellRank: dynamics from multi-view single-cell data☆456Updated this week
- ☆13Apr 13, 2020Updated 6 years ago
- 𝒫robabilistic modeling of RNA velocity ⬱☆49Jul 2, 2026Updated 2 months ago
- Simple, predictable pricing with DigitalOcean hosting • AdAlways know what you'll pay with monthly caps and flat pricing. Enterprise-grade infrastructure trusted by 600k+ customers.
- ☆25Jul 9, 2025Updated last year
- ☆44Jan 12, 2026Updated 8 months ago
- Estimation of Single-Cell Potency with Single Cell Entropy☆47Apr 12, 2023Updated 3 years ago
- Cell cycle inference in single-cell RNA-seq☆52Apr 25, 2023Updated 3 years ago
- A computational tool for identification of 3D multi-modal spatial neighborhoods☆16Aug 1, 2025Updated last year
- inferring regulatory cellular dynamics☆191Sep 11, 2026Updated last week
- Benchmarking analysis of data integration tools☆432Apr 27, 2026Updated 4 months ago
- ☆20Jan 23, 2026Updated 7 months ago
- RNA-velocity informed embeddings for visualizing cellular trajectories☆45Sep 5, 2022Updated 4 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Inclusive model of expression dynamics with conventional or metabolic labeling based scRNA-seq / multiomics, vector field reconstruction …☆510Jul 26, 2026Updated last month
- scMEGA: Single-cell Multiomic Enhancer-based Gene regulAtory network inference☆46Sep 20, 2024Updated 2 years ago
- Dynamic inference from single-cell snapshots by optimal transport☆21Mar 14, 2024Updated 2 years ago
- Python Toolkit for Transcription Factor Activity Inference and Clustering of scRNA-seq Data☆36Dec 15, 2025Updated 9 months ago
- Global Waddington-OT☆23Mar 25, 2025Updated last year
- Implementation of MaSigPro for scRNA-Seq Data☆20Jul 31, 2024Updated 2 years ago
- Landscape Single Cell Entropy☆23Aug 24, 2020Updated 6 years ago
- R package implementation of Milo for testing for differential abundance in KNN graphs☆448Aug 25, 2026Updated 3 weeks ago
- Using combined evidence from replicates to evaluate ChIP-seq peaks☆22Mar 14, 2026Updated 6 months ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- MultiNicheNet: a flexible framework for differential cell-cell communication analysis from multi-sample multi-condition single-cell trans…☆196Aug 12, 2025Updated last year
- Code & utilities for the manuscript "Lineage Recording Reveals the Phylodynamics, Plasticity and Paths of Tumor Evolution"☆14May 27, 2023Updated 3 years ago
- Vaeda method for computational doublet annotation☆21Feb 1, 2026Updated 7 months ago
- Construction of a 3D whole organism spatial atlas by joint modeling of multiple slices☆72Nov 20, 2023Updated 2 years ago
- Codebase for PRESCIENT (Potential eneRgy undErlying Single Cell gradIENTs) for generative modeling of single-cell time-series.☆57Jan 20, 2025Updated last year
- Reproducing the experiments in the paper☆11Dec 14, 2021Updated 4 years ago
- ☆15Jan 18, 2023Updated 3 years ago