☆52Feb 7, 2024Updated 2 years ago
Alternatives and similar repositories for DeepVelo
Users that are interested in DeepVelo are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Predict RNA velocity through deep learning☆74Dec 12, 2023Updated 2 years ago
- UniTVelo, Temporally Unified RNA Velocity for single cell trajectory inference☆30Nov 12, 2024Updated last year
- trajectory inference☆109Jan 27, 2025Updated last year
- ☆45Jan 12, 2026Updated 9 months ago
- physics-informed neural network based method for solving single-cell population dynamics☆18Sep 19, 2026Updated last month
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- ☆11Sep 27, 2022Updated 4 years ago
- Cell cycle inference in single-cell RNA-seq☆52Apr 25, 2023Updated 3 years ago
- Publically accessible code for DIISCO method☆13Oct 15, 2025Updated last year
- inferring regulatory cellular dynamics☆200Oct 21, 2026Updated last week
- CellRank: dynamics from multi-view single-cell data☆460Oct 14, 2026Updated 2 weeks ago
- sEV-containing droplet identification in scRNA-seq data (SEVtras)☆27Feb 22, 2025Updated last year
- ☆18May 30, 2022Updated 4 years ago
- Aligning gene expression trajectories of single-cell reference and query systems☆94Oct 11, 2026Updated 3 weeks ago
- R toolkit for inference and analysis of pathway-mediated cell-cell communication chain from single-cell transcriptomics☆38Mar 10, 2025Updated last year
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Non-parametric density inference for single-cell analysis.☆77Sep 24, 2026Updated last month
- R package: ConDecon is a clustering-independent deconvolution method for estimating cell abundances in bulk tissues using single-cell RNA…☆14Oct 17, 2024Updated 2 years ago
- Code for the paper `Multiscale topology classifies and quantifies cell types in subcellular spatial transcriptomics"☆13Apr 23, 2024Updated 2 years ago
- 𝒫robabilistic modeling of RNA velocity ⬱☆49Jul 2, 2026Updated 4 months ago
- Learn single-cell dynamics using neural differential equations☆72Aug 18, 2026Updated 2 months ago
- Inclusive model of expression dynamics with conventional or metabolic labeling based scRNA-seq / multiomics, vector field reconstruction …☆511Oct 15, 2026Updated 2 weeks ago
- R package implementation of Milo for testing for differential abundance in KNN graphs☆450Aug 25, 2026Updated 2 months ago
- ☆10Dec 19, 2024Updated last year
- Flow-based model for learning non-gradient field dynamics☆27Jul 3, 2026Updated 3 months ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- ☆13Apr 13, 2020Updated 6 years ago
- Estimation of Single-Cell Potency with Single Cell Entropy☆47Sep 23, 2026Updated last month
- Automatically annotate cell types, consistently across samples.☆30Oct 26, 2026Updated last week
- Codebase for PRESCIENT (Potential eneRgy undErlying Single Cell gradIENTs) for generative modeling of single-cell time-series.☆57Jan 20, 2025Updated last year
- ☆10Dec 20, 2024Updated last year
- ☆48May 4, 2024Updated 2 years ago
- Deep Generative Modeling of RNA Velocity☆41Oct 21, 2025Updated last year
- Python Toolkit for Transcription Factor Activity Inference and Clustering of scRNA-seq Data☆36Dec 15, 2025Updated 10 months ago
- Dynamic inference from single-cell snapshots by optimal transport☆21Mar 14, 2024Updated 2 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Benchmarking analysis of data integration tools☆435Apr 27, 2026Updated 6 months ago
- Implementation of MaSigPro for scRNA-Seq Data.☆20Updated this week
- RNA-velocity informed embeddings for visualizing cellular trajectories☆45Sep 5, 2022Updated 4 years ago
- A tool for semi-automatic cell type harmonization and integration☆125Mar 9, 2026Updated 7 months ago
- MultiNicheNet: a flexible framework for differential cell-cell communication analysis from multi-sample multi-condition single-cell trans…☆204Aug 12, 2025Updated last year
- Perturbation-response Score (PS) analysis is a method to quantify diverse perturbation responses and discover novel biological insights i…☆19Apr 20, 2024Updated 2 years ago
- Interpret perturbation responses from scRNA-seq perturbation experiments☆20Mar 4, 2025Updated last year