bowang-lab / DeepVelo

Related projects: ⓘ

• GuangyuWangLab2021 / cellDancer
  Predict RNA velocity through deep learning
  ☆60Updated 9 months ago
• drieslab / awesome-spatial-data-analysis
  Awesome list of tools and methods to perform spatial transcriptomic data analysis.
  ☆38Updated 3 years ago
• wallet-maker / cytopus
  Single cell omics biology annotations
  ☆45Updated this week
• livnatje / DIALOGUE
  DIALOGUE is a dimensionality reduction method that uses cross-cell-type associations to identify multicellular programs (MCPs) and map th…
  ☆102Updated 7 months ago
• cistrome / MIRA
  Python package for analysis of multiomic single cell RNA-seq and ATAC-seq.
  ☆56Updated 4 months ago
• Durenlab / LINGER
  ☆73Updated last month
• SONGDONGYUAN1994 / scDesign3
  scDesign3 generates realistic in silico data for multimodal single-cell and spatial omics
  ☆74Updated 3 weeks ago
• ma-compbio / SpiceMix
  spatial transcriptome, single cell
  ☆63Updated last year
• Papatheodorou-Group / BENGAL
  Nextflow pipeline for cross-species integration and assessment of single cell RNA-seq datasets
  ☆31Updated 5 months ago
• emdann / milopy
  Python implementation of Milo for differential abundance testing on KNN graph
  ☆60Updated 10 months ago
• earmingol / cell2cell
  User-friendly tool to infer cell-cell interactions and communication from gene expression of interacting proteins
  ☆55Updated 3 months ago
• theislab / scib-reproducibility
  Additional code and analysis from the single-cell integration benchmarking project
  ☆52Updated last year
• yunguan-wang / SPROD
  SPROD: Spatial expression profiling de-noising
  ☆32Updated last year
• KlugerLab / GeneTrajectory
  R implementation of GeneTrajectory
  ☆44Updated 5 months ago
• Teichlab / drug2cell
  Gene group activity utility functions for Scanpy
  ☆49Updated last month
• jzhoulab / quasildr
  Quasilinear data representations for single-cell omics data analysis
  ☆42Updated last year
• rargelaguet / mouse_organogenesis_10x_multiome_publication
  Code to reproduce the analysis of "Decoding gene regulation in the mouse embryo using single-cell multi-omics""
  ☆39Updated 2 years ago
• dpeerlab / magic
  MAGIC - imputation and de-noising single-cell RNA seq data sets
  ☆24Updated 5 years ago
• prabhakarlab / Banksy
  BANKSY: spatial clustering
  ☆63Updated last month
• favilaco / deconv_benchmark
  ☆55Updated 3 years ago
• tanaylab / metacells
  Metacells - Single-cell RNA Sequencing Analysis
  ☆89Updated last month
• welch-lab / MultiVelo
  Multi-omic velocity inference
  ☆105Updated last month
• StatBiomed / UniTVelo
  UniTVelo, Temporally Unified RNA Velocity for single cell trajectory inference
  ☆25Updated last year
• YosefLab / PopV
  ☆23Updated 2 weeks ago
• Genentech / scimilarity
  A unifying representation of single cell expression profiles that quantifies similarity between expression states and generalizes to repr…
  ☆84Updated this week
• martinjzhang / scDRS
  Single-cell disease relevance score (scDRS)
  ☆106Updated last month
• sanderlab / scPerturb
  scPerturb: A resource and a python/R tool for single-cell perturbation data
  ☆101Updated 3 weeks ago
• YosefLab / velovi
  ☆36Updated this week
• pinellolab / dictys
  Context specific and dynamic gene regulatory network reconstruction and analysis
  ☆107Updated 3 weeks ago
• brianhie / geosketch
  Geometry-preserving random sampling
  ☆75Updated 3 years ago