Alternatives and similar repositories for mushroom

Users that are interested in mushroom are comparing it to the libraries listed below

• ding-lab / ST_subclone_publication
  Code for spatial subclone paper
  ☆16Updated last year
• YiLab-SC / scHolography
  ☆11Updated last year
• yunguan-wang / Spacia
  ☆30Updated 9 months ago
• Sanofi-Public / spatialone-pipeline
  Spatial One
  ☆30Updated last year
• Jonyyqn / scMalignantFinder
  scMalignantFinder is a Python package specially designed for analyzing cancer single-cell RNA-seq datasets to distinguish malignant cells…
  ☆17Updated last month
• yi-zhang / STHD
  STHD: probabilistic cell typing of Single spots in whole Transcriptome spatial data with High Definition
  ☆36Updated 9 months ago
• LiHongCSBLab / SOAPy
  ☆33Updated 11 months ago
• raphael-group / STARCH
  Spatial Transcriptomics Algorithm Reconstructing Copy-number Heterogeneity
  ☆30Updated last year
• KnottLab / pembroRT-CancerCell2023
  Code related to Shiao, Gouin III, Ing, et al, Cancer Cell 2023.
  ☆13Updated 2 years ago
• raphael-group / CalicoST
  Inferring allele-specific copy number aberrations and tumor phylogeography from spatially resolved transcriptomics
  ☆46Updated 5 months ago
• Banovich-Lab / Spatial_PF
  ☆34Updated 3 months ago
• davidliwei / PS
  Perturbation-response Score (PS) analysis is a method to quantify diverse perturbation responses and discover novel biological insights i…
  ☆17Updated last year
• CamaraLab / ConDecon
  R package: ConDecon is a clustering-independent deconvolution method for estimating cell abundances in bulk tissues using single-cell RNA…
  ☆13Updated last year
• hernet / transcriptional-map-nk
  We describe a transcriptional reference map of human natural killer (NK) cells based on analysis of scRNA-seq data from both blood and ti…
  ☆14Updated last year
• wanglabtongji / SpaceScanner
  Scanner of specific spatial patterns in tissues
  ☆14Updated 3 years ago
• StatBiomed / SpatialDM
  Spatial direct messaging detected by bivariate Moran
  ☆32Updated 6 months ago
• dyxmvp / Spatial_ATAC-seq
  ☆23Updated 2 years ago
• QihuangZhang / CeLEry
  CeLEry: cell location recovery in single-cell RNA sequencing
  ☆37Updated 11 months ago
• JinmiaoChenLab / scTM
  scTM: A package for topic modelling in transcriptomics data
  ☆24Updated last year
• wanglab-broad / spin
  SPatial INtegration of spatially resolved transcriptomics datasets
  ☆18Updated 10 months ago
• ventolab / Human-Uterus-Cell-Altas_UHCA
  UHCA
  ☆11Updated last year
• qingnanl / gsdensity
  ☆11Updated last year
• kaishumason / NicheDE
  NicheDE is a method that detects context dependent changes in gene expression in spatial transcriptomic data.
  ☆23Updated 8 months ago
• christophhmayr / 2023_Mayr
  Code for the spatial transcriptomic paper on IPF lungs
  ☆20Updated last year
• welch-lab / cytosignal
  ☆23Updated 3 weeks ago
• liuqivandy / SpaGene
  ☆27Updated 2 years ago
• wanglab-broad / CAST
  CAST package
  ☆42Updated last year
• BKI-immuno-KNS / MANAscore
  A minimal gene set characterizes multiple classes of tumor-specific TIL among different cancer types
  ☆11Updated 11 months ago
• raphael-group / GASTON
  GASTON: deep learning algorithm learns "topography" of a tissue slice from spatial transcriptomics data
  ☆70Updated 2 months ago
• tiroshlab / Spatial_Glioma
  Code for major analyses in "Integrative spatial analysis reveals a multi-layered organization of glioblastoma" paper
  ☆54Updated last year