A computational tool for identification of 3D multi-modal spatial neighborhoods
☆16Aug 1, 2025Updated 11 months ago
Alternatives and similar repositories for mushroom
Users that are interested in mushroom are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Code for spatial subclone paper☆18Jan 23, 2025Updated last year
- Perturbation-response Score (PS) analysis is a method to quantify diverse perturbation responses and discover novel biological insights i…☆17Apr 20, 2024Updated 2 years ago
- Morphology-Enhanced Spatial Transcriptome Analysis Integrator☆27Mar 16, 2025Updated last year
- ☆15Oct 24, 2025Updated 9 months ago
- An R package for fast topic inference to identify tissue architecture in multiplexed images☆18Jun 5, 2026Updated last month
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- An R library for conducting analyses on COMPASS data.☆17Jun 10, 2021Updated 5 years ago
- A minimal gene set characterizes multiple classes of tumor-specific TIL among different cancer types☆11Mar 4, 2025Updated last year
- ☆47Jun 1, 2026Updated last month
- ☆10Jul 9, 2024Updated 2 years ago
- Cell clustering and communication network inference for single-cell transcriptomics☆15Sep 18, 2024Updated last year
- Inferring multi-modality dynamics for single cell genomics data☆14Dec 18, 2025Updated 7 months ago
- Functional Annotation for Single-Cell Transcriptomics☆12Jun 29, 2024Updated 2 years ago
- Code for major analyses in "Integrative spatial analysis reveals a multi-layered organization of glioblastoma" paper☆57Jan 6, 2025Updated last year
- ☆12May 24, 2024Updated 2 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Epigenetic cell-type deconvolution from Single-Cell Omic Reference profiles☆35Apr 4, 2025Updated last year
- ☆13Sep 30, 2024Updated last year
- Detecting and dissecting anomalous anatomic regions in spatial transcriptomics with STANDS☆11May 18, 2026Updated 2 months ago
- A unified framework for identifying multicellular niches and niche-regulated cell states from spatial transcriptomics data.☆17May 15, 2026Updated 2 months ago
- Scanner of specific spatial patterns in tissues☆14Jul 15, 2022Updated 4 years ago
- codes for article☆19Jan 14, 2026Updated 6 months ago
- ☆14Mar 17, 2026Updated 4 months ago
- ☆17Dec 3, 2025Updated 7 months ago
- Modular pipeline for integrated analysis of the tumour microenvironment using multiplex imaging☆14Jul 29, 2025Updated 11 months ago
- Bare Metal GPUs on DigitalOcean Gradient AI • AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- LARIS enables accurate and efficient ligand and receptor interaction analysis in spatial transcriptomics☆16Feb 26, 2026Updated 4 months ago
- Spatial Cellular Estimator for Tumors☆65Updated this week
- Scripts used for the ACT paper☆12May 6, 2021Updated 5 years ago
- scMODAL: A general deep learning framework for single-cell Multi-Omics Data Alignment with feature Links☆23Jun 10, 2025Updated last year
- R script for calculating the SpatialScore as described in our manuscript: "Immune cell topography predicts response to PD-1 blockade in c…☆17Sep 26, 2021Updated 4 years ago
- ☆37Oct 22, 2025Updated 9 months ago
- Cross-modal Identification of Tertiary Lymphoid Structures☆31Jun 19, 2024Updated 2 years ago
- Extracellular vesicle-derived miRNA-mediated cell-cell communication inference for single-cell transcriptomic data☆18Apr 15, 2025Updated last year
- Scripts from the GBM cellular states paper☆21Feb 24, 2021Updated 5 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- De novo reconstruction of cell interaction landscapes from single-cell spatial transcriptome data☆21Oct 11, 2022Updated 3 years ago
- E4 TimeStamper helps researchers to automatically add timestamps to physiological data derived from Empatica's E4 wristbands.☆18May 23, 2026Updated 2 months ago
- ☆34Feb 25, 2025Updated last year
- A Toolbox for Spatial Transcriptomics Analysis☆171May 6, 2025Updated last year
- Open-ST: profile and analyze tissue transcriptomes in 3D with high resolution in your lab☆116Jul 4, 2025Updated last year
- Library for managing, storage, viewing, and working with spatial transcriptomics data using Imglib2, N5, BigDataViewer and Fiji.☆32May 27, 2025Updated last year
- Python package to find communication-driven intercellular flows from single-cell RNA-sequencing and spatial transcriptomics data.☆88Mar 19, 2026Updated 4 months ago