Alternatives and similar repositories for mushroom:

Users that are interested in mushroom are comparing it to the libraries listed below

• YiLab-SC / scHolography
  ☆11Updated 10 months ago
• wanglabtongji / SpaceScanner
  Scanner of specific spatial patterns in tissues
  ☆11Updated 2 years ago
• miccec / GBMstates
  Scripts from the GBM cellular states paper
  ☆18Updated 4 years ago
• davidliwei / PS
  Perturbation-response Score (PS) analysis is a method to quantify diverse perturbation responses and discover novel biological insights i…
  ☆12Updated 11 months ago
• Banovich-Lab / Spatial_PF
  ☆24Updated last month
• christophhmayr / 2023_Mayr
  Code for the spatial transcriptomic paper on IPF lungs
  ☆16Updated 9 months ago
• Flashiness / METI
  Morphology-Enhanced Spatial Transcriptome Analysis Integrator
  ☆25Updated last month
• raphael-group / CalicoST
  Inferring allele-specific copy number aberrations and tumor phylogeography from spatially resolved transcriptomics
  ☆33Updated last week
• kaifuchenlab / MEBOCOST
  ☆16Updated 10 months ago
• welch-lab / cytosignal
  ☆17Updated last week
• AndersonHu85 / ccRCC_multiomics
  ☆16Updated last year
• scmethods / scregclust
  ☆12Updated 2 months ago
• yanailab / PanCancer
  Data available at: https://www.dropbox.com/sh/jh4s57kgbb0rnxe/AABoMK466cGc1OKsOuFN10wca?dl=0 and https://nyulangone-my.sharepoint.com//g/…
  ☆30Updated 2 years ago
• JunyueCaoLab / EasySci
  Computational pipeline to process EasySci-RNA data.
  ☆18Updated last year
• pachterlab / FGP_2024
  ☆12Updated 2 months ago
• kaishumason / NicheDE
  NicheDE is a method that detects context dependent changes in gene expression in spatial transcriptomic data.
  ☆17Updated 6 months ago
• qingnanl / gsdensity
  ☆9Updated 9 months ago
• bsungwoo / spSeudoMap
  spSeudoMap: cell type mapping of spatial transcriptomics using unmatched single-cell RNA-seq data
  ☆12Updated 6 months ago
• guangchunhan / LUAD_Code
  ☆18Updated last year
• ZhoulabCPH / MVI_HCC
  These are code and scripts for MVI+ HCC scRNA-seq analysis.
  ☆15Updated last year
• KPMP / Cell-State-Atlas-2022
  Code for a multimodal atlas of healthy and injured cell states and niches in the human kidney
  ☆17Updated last year
• hernet / transcriptional-map-nk
  We describe a transcriptional reference map of human natural killer (NK) cells based on analysis of scRNA-seq data from both blood and ti…
  ☆9Updated 6 months ago
• KramannLab / visium_heart
  Spatial transcriptomics of heart tissue
  ☆20Updated 2 years ago
• wanglab-broad / CAST
  CAST package
  ☆34Updated 5 months ago
• dpeerlab / pdac-progression
  ☆10Updated last year
• whwanglab / PDAC
  ☆11Updated 2 years ago
• WWXkenmo / ICAnet
  Independent Component Analysis decipher functional modules for better cell clustering and annotation
  ☆15Updated 3 years ago
• raphael-group / STARCH
  Spatial Transcriptomics Algorithm Reconstructing Copy-number Heterogeneity
  ☆26Updated 8 months ago
• yunshun / HumanBreast10X
  ☆25Updated 3 years ago
• sunnyzwu / stromal_subclasses
  code for data processing and visualisation associated with the stromal subclasses manuscript
  ☆11Updated 4 years ago