Single-cell perturbation effects prediction benchmark
☆92May 6, 2026Updated 2 months ago
Alternatives and similar repositories for scPerturBench
Users that are interested in scPerturBench are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Single-Cell (Perturbation) Model Library☆116Jul 1, 2026Updated 2 weeks ago
- ☆69Jan 14, 2026Updated 6 months ago
- GEARS is a geometric deep learning model that predicts outcomes of novel multi-gene perturbations☆384Feb 1, 2025Updated last year
- ☆89Feb 17, 2026Updated 5 months ago
- ☆30Oct 14, 2024Updated last year
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- State is a machine learning model that predicts cellular perturbation response across diverse contexts☆621Updated this week
- GenePert: Leveraging GenePT Embeddings for Gene Perturbation Prediction☆22Oct 29, 2024Updated last year
- PerturbNet is a deep generative model that can predict the distribution of cell states induced by chemical or genetic perturbation☆66Jan 12, 2026Updated 6 months ago
- Modeling complex perturbations with CellFlow☆151Updated this week
- Modeling and predicting single-cell multi-gene perturbation responses with scLAMBDA☆27Mar 20, 2026Updated 4 months ago
- A repository for reproducing experiments from the TxPert paper☆41Mar 25, 2026Updated 3 months ago
- ☆19May 23, 2025Updated last year
- Stack is a single-cell foundation model that enables in-context learning at inference time.☆143Apr 28, 2026Updated 2 months ago
- The Compositional Perturbation Autoencoder (CPA) is a deep generative framework to learn effects of perturbations at the single-cell leve…☆149Aug 14, 2024Updated last year
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- ☆87Jul 18, 2025Updated last year
- ☆178Jan 30, 2026Updated 5 months ago
- ☆19May 29, 2026Updated last month
- Single-cell perturbation analysis☆338Updated this week
- ☆51Jun 16, 2025Updated last year
- Perturbational analysis by causality-aware generative model for single-cell RNA-sequencing data☆23Dec 16, 2025Updated 7 months ago
- CellNavi is a deep learning framework designed to predict genes driving cellular transitions.☆51Jul 10, 2026Updated last week
- Evaluation suite for transcriptomic perturbation effect prediction models. Includes support for single-cell foundation models.☆38Jul 29, 2025Updated 11 months ago
- ☆505Jul 15, 2026Updated last week
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- ☆54Apr 7, 2026Updated 3 months ago
- Arc Virtual Cell Atlas☆560Jul 1, 2026Updated 2 weeks ago
- UCE is a zero-shot foundation model for single-cell gene expression data☆311Jul 8, 2026Updated last week
- Comprehensive suite for evaluating perturbation prediction models☆146Jul 14, 2026Updated last week
- 🏃 The go-to single-cell Foundation Model☆154May 20, 2026Updated 2 months ago
- Scripts for analysis of genome-wide perturb-seq in primary human T cells☆18Jun 1, 2026Updated last month
- ☆16Dec 18, 2024Updated last year
- ☆109Updated this week
- A model developed for the generation of scRNA-seq data☆94Jan 21, 2026Updated 6 months ago
- Simple, predictable pricing with DigitalOcean hosting • AdAlways know what you'll pay with monthly caps and flat pricing. Enterprise-grade infrastructure trusted by 600k+ customers.
- LLM agents for working with the SRA and associated bioinformatics databases.☆177May 22, 2026Updated 2 months ago
- A foundation model for single-cell epigenomic data☆69Jun 3, 2026Updated last month
- ☆421Nov 23, 2025Updated 7 months ago
- ☆17Jul 8, 2024Updated 2 years ago
- Perturbation-response Score (PS) analysis is a method to quantify diverse perturbation responses and discover novel biological insights i…☆17Apr 20, 2024Updated 2 years ago
- Code for "Predicting Cellular Responses to Novel Drug Perturbations at a Single-Cell Resolution", NeurIPS 2022.☆156Feb 6, 2025Updated last year
- PULSAR: a Foundation Model for Multi-scale and Multicellular Biology☆36Mar 1, 2026Updated 4 months ago