Alternatives and similar repositories for stack

Users that are interested in stack are comparing it to the libraries listed below

• const-ae / linear_perturbation_prediction-Paper
  ☆69Updated 6 months ago
• czi-ai / transcriptformer
  ☆100Updated 3 months ago
• microsoft / zero-shot-scfoundation
  ☆79Updated 3 weeks ago
• cantinilab / scPRINT
  🏃 The go-to single-cell Foundation Model
  ☆135Updated last month
• altoslabs / perturbench
  ☆74Updated last week
• welch-lab / PerturbNet
  PerturbNet is a deep generative model that can predict the distribution of cell states induced by chemical or genetic perturbation
  ☆61Updated 3 weeks ago
• zou-group / CellVoyager
  ☆101Updated 4 months ago
• EperLuo / scDiffusion
  A model developed for the generation of scRNA-seq data
  ☆84Updated 2 weeks ago
• aaronwtr / PertEval
  Evaluation suite for transcriptomic perturbation effect prediction models. Includes support for single-cell foundation models.
  ☆35Updated 6 months ago
• SuperBianC / scMulan
  Repository for paper scMulan: a multitask generative pre-trained language model for single-cell analysis.
  ☆61Updated last year
• jkobject / geneformer
  ☆92Updated 5 months ago
• siyuh / Squidiff
  ☆114Updated last week
• theislab / nicheformer
  Repository for Nicheformer: a foundation model for single-cell and spatial omics
  ☆149Updated 2 months ago
• theislab / CFGen
  ☆25Updated 5 months ago
• Genentech / SpatialAgent
  ☆134Updated 10 months ago
• sldyns / SpaHDmap
  Deep fusion of spatial transcriptomics and histology images for interpretable high-definition embedding mapping
  ☆16Updated last week
• sjgosai / boda2
  Computational Optimization of DNA Activity (CODA)
  ☆67Updated 10 months ago
• sanderlab / scPerturb
  scPerturb: A resource and a python/R tool for single-cell perturbation data
  ☆165Updated 11 months ago
• theislab / prophet
  ☆38Updated last month
• carpenter-singh-lab / 2022_Haghighi_NatureMethods
  High-Dimensional Gene Expression and Morphology Profiles of Cells across 28,000 Genetic and Chemical Perturbations
  ☆53Updated 5 months ago
• ArcInstitute / cell-eval
  Comprehensive suite for evaluating perturbation prediction models
  ☆120Updated 3 weeks ago
• nitzanlab / biolord
  ☆90Updated last year
• OmicsML / CellPLM
  Official repo for CellPLM: Pre-training of Cell Language Model Beyond Single Cells.
  ☆101Updated last year
• snap-stanford / KGWAS
  KGWAS: novel genetics discovery enabled by massive functional genomics knowledge graph
  ☆77Updated 11 months ago
• snap-stanford / SATURN
  ☆155Updated last year
• biomed-AI / CellFM
  ☆95Updated 5 months ago
• bowang-lab / scGPT-spatial
  ☆126Updated 11 months ago
• pinellolab / simba
  SIMBA: SIngle-cell eMBedding Along with features
  ☆66Updated last year
• ZhangLabGT / scMultiSim
  A simulator for single cell multi-omics and spatial omics data that provides ground truth to benchmark a wide range of methods.
  ☆69Updated 3 months ago
• theislab / cpa
  The Compositional Perturbation Autoencoder (CPA) is a deep generative framework to learn effects of perturbations at the single-cell leve…
  ☆134Updated last year