Stack is a single-cell foundation model that enables in-context learning at inference time.
☆141Apr 28, 2026Updated 2 months ago
Alternatives and similar repositories for stack
Users that are interested in stack are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- State is a machine learning model that predicts cellular perturbation response across diverse contexts☆621Updated this week
- X-Cell: a diffusion language model for genome-scale perturbation prediction☆106Mar 16, 2026Updated 4 months ago
- Arc Virtual Cell Atlas☆557Jul 1, 2026Updated 2 weeks ago
- Comprehensive suite for evaluating perturbation prediction models☆146Updated this week
- pytorch dataloaders for single-cell perturbation data☆47Updated this week
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Single-cell perturbation effects prediction benchmark☆92May 6, 2026Updated 2 months ago
- Tahoe-x1 is a single cell foundation model designed for gigascale datasets☆158Jun 3, 2026Updated last month
- parallel differential expression for single-cell perturbation sequencing☆25Updated this week
- ☆20Nov 12, 2025Updated 8 months ago
- ☆178Jan 30, 2026Updated 5 months ago
- Modeling complex perturbations with CellFlow☆151Updated this week
- Official implementation of "CellFlux: Simulating Cellular Morphology Changes via Flow Matching" (ICML 2025)☆42Sep 3, 2025Updated 10 months ago
- ☆117Aug 18, 2025Updated 11 months ago
- Contrastive pre-training for technology-agnostic single-cell representations beyond reconstruction☆37Jun 15, 2026Updated last month
- Deploy open-source AI quickly and easily - Special Bonus Offer • AdRunpod Hub is built for open source. One-click deployment and autoscaling endpoints without provisioning your own infrastructure.
- ☆52Apr 7, 2026Updated 3 months ago
- Perturbational analysis by causality-aware generative model for single-cell RNA-sequencing data☆23Dec 16, 2025Updated 7 months ago
- ☆22Apr 30, 2025Updated last year
- Single-cell perturbation analysis☆338Updated this week
- PULSAR: a Foundation Model for Multi-scale and Multicellular Biology☆36Mar 1, 2026Updated 4 months ago
- Compound ranking predictions from gene expression signatures using ensemble neural network models.☆85Mar 23, 2026Updated 3 months ago
- AetherCell is a hierarchical generative framework designed to predict context-specific transcriptomic responses to drugs and genetic pert…☆19May 14, 2026Updated 2 months ago
- ☆87Jul 18, 2025Updated last year
- A repository for reproducing experiments from the TxPert paper☆41Mar 25, 2026Updated 3 months ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- ☆31Jan 22, 2025Updated last year
- ☆109Updated this week
- A Predictive World Model of the Transcriptome☆34Oct 18, 2025Updated 9 months ago
- ☆421Nov 23, 2025Updated 7 months ago
- ☆161Nov 13, 2025Updated 8 months ago
- ☆502Updated this week
- UNAGI: deep generative AI for virtual disease and unsuperivsed in-silico perturbations.☆58Jul 10, 2026Updated last week
- Diffusion Model for Single-Cell Multiome Data Generation and Analysis☆39May 19, 2026Updated 2 months ago
- Cell2Sentence: Teaching Large Language Models the Language of Biology☆874Nov 4, 2025Updated 8 months ago
- End-to-end encrypted cloud storage - Proton Drive • AdSpecial offer: 40% Off Yearly / 80% Off First Month. Protect your most important files, photos, and documents from prying eyes.
- Reproduce analyses and baselines from the State paper☆16Jun 29, 2026Updated 3 weeks ago
- 🏃 The go-to single-cell Foundation Model☆154May 20, 2026Updated 2 months ago
- CellNavi is a deep learning framework designed to predict genes driving cellular transitions.☆51Jul 10, 2026Updated last week
- ☆19Mar 31, 2023Updated 3 years ago
- GEARS is a geometric deep learning model that predicts outcomes of novel multi-gene perturbations☆383Feb 1, 2025Updated last year
- UCE is a zero-shot foundation model for single-cell gene expression data☆309Jul 8, 2026Updated last week
- Code and example of the D-SPIN framework☆39May 12, 2026Updated 2 months ago