Alternatives and similar repositories for GenKI:

Users that are interested in GenKI are comparing it to the libraries listed below

• lanagarmire / Asgard
  ☆42Updated last year
• Teichlab / drug2cell
  Gene group activity utility functions for Scanpy
  ☆71Updated 3 months ago
• OSU-BMBL / scDEAL
  Deep Transfer Learning of Drug Sensitivity by Integrating Bulk and Single-cell RNA-seq data
  ☆54Updated 8 months ago
• cliffren / PENCIL
  PENCIL is a novel tool for singlecell data analysis to identify phenotype associated subpopulations and informative genes simultaneously.
  ☆28Updated last year
• ImmucanWP7 / immucan-scdb
  ☆16Updated last year
• ZJUFanLab / scRank
  A computational method to rank and infer drug-responsive cell population towards in-silico drug perturbation using a target-perturbed gen…
  ☆45Updated 8 months ago
• KlugerLab / GeneTrajectory
  R implementation of GeneTrajectory
  ☆58Updated last year
• beyondpie / CEMBA_wmb_snATAC
  Whole mouse brain snATAC seq analysis
  ☆25Updated 3 weeks ago
• StatBiomed / SpatialDM
  Spatial direct messaging detected by bivariate Moran
  ☆26Updated 3 months ago
• SmritiChawla / Precily
  ☆30Updated 2 years ago
• ZJUFanLab / scNiche
  a computational framework to identify and characterize cell niches from spatial omics data at single-cell resolution
  ☆26Updated 2 months ago
• immunogenomics / RA_Atlas_CITEseq
  RA Synovial Single-cell Multimodal Cell Atlas
  ☆13Updated last year
• Durenlab / LINGER
  ☆100Updated 3 months ago
• gmstanle / coronary-progenitor-scRNAseq
  ☆13Updated 6 years ago
• Roy-lab / scMTNI
  ☆25Updated 3 months ago
• xiaoyeye / TFvelo
  ☆44Updated 11 months ago
• yunguan-wang / SPROD
  SPROD: Spatial expression profiling de-noising
  ☆36Updated last year
• PYangLab / Matilda
  Matilda is a multi-task framework for learning from single-cell multimodal omics data. Matilda leverages the information from the multi-m…
  ☆20Updated 4 months ago
• DongqingSun96 / STRIDE
  STRIDE (Spatial TRanscRIptomics DEconvolution by topic modelling) is a cell-type deconvolution tool for spatial transcriptomics by using …
  ☆18Updated 2 years ago
• lanagarmire / Single-cell-drug-repositioning
  ☆15Updated 9 months ago
• SONGDONGYUAN1994 / scDesign3
  scDesign3 generates realistic in silico data for multimodal single-cell and spatial omics
  ☆93Updated last month
• snehamitra / SCARlink
  ☆50Updated 7 months ago
• zhouzilu / cTPnet
  cTPnet Package
  ☆25Updated 2 years ago
• ZJUFanLab / scSpace
  an integrative algorithm to distinguish spatially variable cell subclusters by reconstructing cells onto a pseudo space with spatial tran…
  ☆22Updated last year
• matanhofree / crc-immune-hubs
  Principal analysis code used in for analysis of single cell RNAseq of primary untreated colon cancer. As described in: "Spatially organiz…
  ☆39Updated 3 years ago
• YingMa0107 / IRIS
  Integrative and Reference-Informed Spatial Domain Detection for Spatial Transcriptomics
  ☆34Updated 2 months ago
• JinmiaoChenLab / DISCOtoolkit
  ☆29Updated this week
• decomverse / ACTIONet
  ACTIONet single-cell analysis framework
  ☆38Updated 7 months ago
• teresho4 / scRNA-seq_atlas_Hs_PBMC_aging
  ☆15Updated last year
• zakieh-tayyebi / CellSpace
  Scalable sequence-informed embedding of single-cell ATAC-seq data with CellSpace
  ☆40Updated 3 months ago