Alternatives and similar repositories for GenKI

Users that are interested in GenKI are comparing it to the libraries listed below

• lanagarmire / Asgard
  ☆45Updated 2 years ago
• Teichlab / drug2cell
  Gene group activity utility functions for Scanpy
  ☆100Updated last year
• ZJUFanLab / scRank
  A computational method to rank and infer drug-responsive cell population towards in-silico drug perturbation using a target-perturbed gen…
  ☆64Updated 3 months ago
• cliffren / PENCIL
  PENCIL is a novel tool for singlecell data analysis to identify phenotype associated subpopulations and informative genes simultaneously.
  ☆28Updated 2 years ago
• KlugerLab / GeneTrajectory
  R implementation of GeneTrajectory
  ☆69Updated last year
• Patchouli-M / SequencingCancerFinder
  ☆43Updated 8 months ago
• matanhofree / crc-immune-hubs
  Principal analysis code used in for analysis of single cell RNAseq of primary untreated colon cancer. As described in: "Spatially organiz…
  ☆40Updated 4 years ago
• SONGDONGYUAN1994 / scDesign3
  scDesign3 generates realistic in silico data for multimodal single-cell and spatial omics
  ☆113Updated 4 months ago
• wallet-maker / cytopus
  Single cell omics biology annotations
  ☆53Updated 9 months ago
• Masood-Lab / PDAC_Mets
  The current study provides a comprehensive insights into the PDAC metastatic biology.
  ☆25Updated last year
• ImmucanWP7 / immucan-scdb
  ☆17Updated 2 years ago
• Junjie-Hu / NSCLC-immunotherapy
  ☆28Updated 2 years ago
• madilabcode / scNET
  ☆59Updated last week
• Durenlab / LINGER
  ☆123Updated 8 months ago
• saezlab / visium_heart
  Spatial transcriptomics of heart tissue
  ☆107Updated 2 years ago
• ZJUFanLab / scNiche
  a computational framework to identify and characterize cell niches from spatial omics data at single-cell resolution
  ☆50Updated 5 months ago
• OSU-BMBL / scDEAL
  Deep Transfer Learning of Drug Sensitivity by Integrating Bulk and Single-cell RNA-seq data
  ☆59Updated last year
• GuangyuWangLab2021 / cellDancer
  Predict RNA velocity through deep learning
  ☆72Updated 2 years ago
• mcgilldinglab / UNAGI
  UNAGI: deep generative AI for virtual disease and unsuperivsed in-silico perturbations.
  ☆49Updated 2 weeks ago
• omnideconv / omnideconv
  Unified access to several second-generation deconvolution methods
  ☆91Updated 3 weeks ago
• theislab / neural_organoid_atlas
  Reproducibility repository for the Human Neural Organoid Atlas publication
  ☆43Updated last year
• xiaoyeye / TFvelo
  ☆46Updated last year
• ostunilab / PDAC_Nature_2023
  ☆21Updated last year
• snehamitra / SCARlink
  ☆62Updated last month
• gmstanle / coronary-progenitor-scRNAseq
  ☆13Updated 7 years ago
• theislab / scib-reproducibility
  Additional code and analysis from the single-cell integration benchmarking project
  ☆71Updated 3 years ago
• icbi-lab / luca
  Single-cell Lung Cancer Atlas with 1.2M cells
  ☆87Updated last year
• Teichlab / HCA_Heart_ver2
  ☆40Updated 2 years ago
• mcgilldinglab / scSemiProfiler
  A computational method scSemiProfiler that provides affordable single-cell data for large-scale disease cohorts using deep generative mod…
  ☆26Updated 7 months ago
• YMa-lab / IRIS
  Integrative and Reference-Informed Spatial Domain Detection for Spatial Transcriptomics
  ☆41Updated last year