ArcInstitute / state-reproduceView external linksLinks
Reproduce analyses and baselines from the State paper
☆13Oct 24, 2025Updated 3 months ago
Alternatives and similar repositories for state-reproduce
Users that are interested in state-reproduce are comparing it to the libraries listed below
Sorting:
- Evaluation suite for transcriptomic perturbation effect prediction models. Includes support for single-cell foundation models.☆35Jul 29, 2025Updated 6 months ago
- NeST-VNN repo☆12Jun 13, 2025Updated 8 months ago
- Research Paper: "Graph Contrastive Learning as a Versatile Foundation for Advanced scRNA-seq Data Analysis"☆10Nov 20, 2024Updated last year
- pytorch dataloaders for single-cell perturbation data☆43Updated this week
- Diffusion model for gene regulatory network inference.☆26Jan 29, 2026Updated 2 weeks ago
- This is the official implementation of the paper: Fractional Denoising for 3D Molecular Pre-training☆22Mar 30, 2024Updated last year
- Drug Response Prediction and Biomarker Discovery Using Multi-Modal Deep Learning☆14Apr 24, 2024Updated last year
- ☆10Aug 5, 2021Updated 4 years ago
- 吴恩达深度学习课程课后作业☆10Jan 28, 2020Updated 6 years ago
- ☆12Jun 16, 2025Updated 8 months ago
- Perform probe-guided blind docking with FTMap and DOCK6☆10Apr 25, 2023Updated 2 years ago
- PERM GaussianKG☆10Nov 24, 2021Updated 4 years ago
- ☆11Nov 11, 2023Updated 2 years ago
- Scalable tumor phylogeny inference and validation from single-cell RNA or DNA data☆14Dec 24, 2023Updated 2 years ago
- ☆11Aug 13, 2025Updated 6 months ago
- Parallelizing Google's PageRank algorithm in C++ with CUDA framework on GPU. Conducted some experiments, tried new ideas. Final Course Pr…☆10May 20, 2021Updated 4 years ago
- A thin wrapper around ProteinMPNN for convenient sampling without having to write out or consume files☆12Apr 29, 2024Updated last year
- Resources for Drug Repurposing In Alzheimer's Disease (DRIAD) work☆11Mar 4, 2021Updated 4 years ago
- ☆10Sep 24, 2024Updated last year
- Minibatch loading for on-disk anndata files, co-developed by Lamin Labs and scverse☆24Updated this week
- lightgbmのfeature-transform(特徴量の非線形化)をすることで、80,000を超える特徴量を線形回帰でも表現できることを示します☆10Nov 7, 2017Updated 8 years ago
- ☆10Nov 17, 2020Updated 5 years ago
- The SimSite3D Software tools are designed to quickly search a database of three dimensional structures, in Protein Data Bank format, with…☆11Oct 18, 2018Updated 7 years ago
- The main repository for ACTIVA: realistic single-cell RNA-seq generation with automatic cell-type identification using introspective vari…☆10Jan 23, 2023Updated 3 years ago
- ☆15Apr 30, 2025Updated 9 months ago
- Code of "Instruction Multi-Constraint Molecular Generation Using a Teacher-Student Large Language Model"☆14Jul 8, 2025Updated 7 months ago
- Code for WWW'26 paper: Hi-GMAE: Hierarchical Graph Masked Autoencoders☆11Feb 8, 2025Updated last year
- Perturbational analysis by causality-aware generative model for single-cell RNA-sequencing data☆19Dec 16, 2025Updated 2 months ago
- chatgpt api 网页,基于gpt-3.5-turbo☆12Mar 7, 2023Updated 2 years ago
- Dynamic Flux Balance analysis in Python☆11Jan 22, 2016Updated 10 years ago
- Processed E-MTAB-3610 dataset - Transcriptional Profiling of 1,000 human cancer cell lines☆11Dec 23, 2021Updated 4 years ago
- A computational method for comparing cellular profiles with the flexibility to place a higher weight on functional features of interest.☆12Jan 31, 2023Updated 3 years ago
- Python library (C++ backend) for degree-preserving network randomization☆14Oct 14, 2019Updated 6 years ago
- Notebook tutorials for MolecularGraph.jl☆11Jun 22, 2025Updated 7 months ago
- Official implementation for the paper "EBMDOCK: NEURAL PROBABILISTIC PROTEIN-PROTEIN DOCKING VIA A DIFFERENTIABLE ENERGY-BASED MODEL" (IC…☆14Apr 24, 2024Updated last year
- A simulator for low-precision floating point calculations running in the browser☆12Mar 11, 2024Updated last year
- material for cheminfo tutorial☆13Oct 26, 2023Updated 2 years ago
- Breast Cancer Single Cell Atlas☆12Mar 31, 2022Updated 3 years ago
- I have developed a local computer software called OmicsTools for unlimited, zero-code bioinformatics data analysis and visualization. Omi…☆19Feb 4, 2026Updated last week