mcgilldinglab / scCross
A Deep Learning-Based Model for the integration, cross-dataset cross-modality generation, self augmentation and matched multi-omics simulation of single-cell multi-omics data. Our model excels at maintaining in-silico perturbations during cross-modality generation and harnessing these perturbations to identify key genes.
☆13Updated 2 months ago
Alternatives and similar repositories for scCross:
Users that are interested in scCross are comparing it to the libraries listed below
- ☆18Updated 5 months ago
- Adversarial domain translation networks for integrating large-scale atlas-level single-cell datasets☆30Updated last year
- Enhancing spatial transcriptomics data by predicting the expression of unmeasured genes from a dissociated scRNA-seq data☆33Updated 6 months ago
- Deciphering driver regulators of cell fate decisions from single-cell RNA-seq data☆22Updated 3 months ago
- STAligner is a tool for alignment and integration of spatially resolved transcriptomics data.☆34Updated 9 months ago
- ☆11Updated last year
- ☆34Updated last year
- A unified approach for integrating spatial and single-cell transcriptomics data by leveraging deep generative models☆58Updated 8 months ago
- ☆29Updated 7 months ago
- ☆41Updated last year
- a unified single-cell data integration framework by optimal transport☆33Updated 3 months ago
- scNODE: Generative Model for Temporal Single Cell Transcriptomic Data Prediction☆18Updated 3 months ago
- Multi-omics data analysis for rare population inference using single-cell graph transformer☆17Updated 2 months ago
- ☆52Updated 6 months ago
- ☆29Updated last year
- ☆24Updated last year
- Deconvoluting Spatial Transcriptomics Data through Graph-based Artificial Intelligence☆37Updated 2 years ago
- ☆21Updated 7 months ago
- Cell clustering for spatial transcriptomics data with graph neural network☆58Updated last year
- Knowledge-graph-based cell-cell communication inference for spatially resolved transcriptomic data☆62Updated last week
- Single Cell Multi-omics deep clustering☆25Updated 11 months ago
- ☆49Updated 2 months ago
- ☆28Updated 4 months ago
- ☆101Updated 10 months ago
- SpatialGlue is a novel deep learning methods for spatial multi-omics data integration.☆46Updated 7 months ago
- Repository for Nicheformer: a foundation model for single-cell and spatial omics☆78Updated 3 weeks ago
- scAce: an adaptive embedding and clustering method for scRNA-seq data☆11Updated last year
- Identify spatial domain☆63Updated last year
- domain adaptation of spatial and single-cell transcriptome☆25Updated 4 months ago