Alternatives and similar repositories for scCross:

Users that are interested in scCross are comparing it to the libraries listed below

• OSU-BMBL / marsgt
  Multi-omics data analysis for rare population inference using single-cell graph transformer
  ☆19Updated 5 months ago
• YangLabHKUST / Portal
  Adversarial domain translation networks for integrating large-scale atlas-level single-cell datasets
  ☆30Updated last year
• WPZgithub / CEFCON
  Deciphering driver regulators of cell fate decisions from single-cell RNA-seq data
  ☆24Updated 6 months ago
• tabdelaal / SpaGE
  Enhancing spatial transcriptomics data by predicting the expression of unmeasured genes from a dissociated scRNA-seq data
  ☆34Updated 10 months ago
• zhoux85 / STAligner
  STAligner is a tool for alignment and integration of spatially resolved transcriptomics data.
  ☆39Updated last year
• QuKunLab / MultiomeBenchmarking
  ☆43Updated 2 months ago
• XLearning-SCU / scBridge
  ☆21Updated 8 months ago
• bm2-lab / scMVP
  ☆29Updated 3 weeks ago
• KlugerLab / SIMVI
  ☆11Updated 4 months ago
• sldyns / scAce
  scAce: an adaptive embedding and clustering method for scRNA-seq data
  ☆11Updated last year
• suinleelab / contrastiveVI
  ☆54Updated last year
• Su-informatics-lab / DSTG
  Deconvoluting Spatial Transcriptomics Data through Graph-based Artificial Intelligence
  ☆38Updated 2 years ago
• zhanglab-wbgcas / STGRNS
  ☆29Updated 2 years ago
• mcgilldinglab / CellAgentChat
  Python agent-based model tool for inference, visualization and analysis of cell-cell communication from single-cell data
  ☆30Updated last month
• ZJUFanLab / scCube
  an SRT simulator for simulating multiple spatial variability in spatial resolved transcriptomics and generating unbiased simulated SRT da…
  ☆24Updated last month
• aaronwtr / PertEval
  Evaluation suite for transcriptomic perturbation effect prediction models. Includes support for single-cell foundation models.
  ☆23Updated last month
• theislab / multicpa
  ☆14Updated 2 years ago
• dpeerlab / ENVI
  ☆48Updated last month
• Teichlab / celcomen
  ☆12Updated last month
• rsinghlab / scNODE
  scNODE: Generative Model for Temporal Single Cell Transcriptomic Data Prediction
  ☆19Updated 6 months ago
• ZJUFanLab / scNiche
  a computational framework to identify and characterize cell niches from spatial omics data at single-cell resolution
  ☆26Updated 2 months ago
• theislab / CellFlow
  Modeling complex perturbations with CellFlow
  ☆29Updated this week
• theislab / scTab
  ☆58Updated 7 months ago
• MICS-Lab / novae
  Graph-based foundation model for spatial transcriptomics data. Zero-shot spatial domain inference, batch-effect correction, and many othe…
  ☆40Updated last week
• JiangBioLab / DeepTalk
  Deciphering cell-cell communication from spatially resolved transcriptomic data at single-cell resolution with subgraph-based attentional…
  ☆24Updated 8 months ago
• kodaim1115 / scMM
  ☆17Updated 3 years ago
• marvinquiet / Cellcano
  Supervised cell type identification for scATAC-seq data
  ☆13Updated last year
• ZJUFanLab / scSpace
  an integrative algorithm to distinguish spatially variable cell subclusters by reconstructing cells onto a pseudo space with spatial tran…
  ☆22Updated last year
• QIFEIDKN / STAGATE
  Adaptive Graph Attention Auto-encoder for Spatial Domain Identification of Spatial Transcriptomics
  ☆45Updated 2 years ago
• zhanglabtools / CAME
  Cell-type Assignment and Module Extraction based on a heterogeneous graph neural network.
  ☆9Updated last year