AmandaKedaigle / OrganoidAtlasLinks
Code to go along with https://doi.org/10.1016/j.cell.2022.09.010
☆21Updated 3 years ago
Alternatives and similar repositories for OrganoidAtlas
Users that are interested in OrganoidAtlas are comparing it to the libraries listed below
Sorting:
- Reproducibility code for the manuscript: 'Inferring and perturbing cell fate regulomes in human cerebral organoids☆29Updated 2 years ago
- ☆58Updated last year
- Repository for the building, sharing and editing of scRNAseq pipelines for the Lung Cell Atlas☆38Updated 4 years ago
- Analysis of imbalanced data and its impacts in a scRNA-seq integration setting☆30Updated 5 months ago
- Lung cancer 10X analysis☆11Updated 4 years ago
- Single-cell RNA-seq data-based inference of multilayer inter- and intra-cellular signaling networks☆27Updated 4 years ago
- Ordering gene-expression and functional events in single-cell experiments☆23Updated last year
- Computational pipeline to process EasySci-RNA data.☆21Updated last year
- Bi-order integration (in silico multi-omics data) of single cell RNA sequencing, single cell ATAC sequencing, spacial transcriptomics and…☆36Updated 2 years ago
- ☆22Updated 2 years ago
- Independent Component Analysis decipher functional modules for better cell clustering and annotation☆17Updated 3 years ago
- Calculation of Reference/Cluster Similarity Spectrum (RSS/CSS)☆33Updated last year
- A record of the analysis pipelines used to create the HTAPP data☆33Updated 4 months ago
- Spatial transcriptomics of heart tissue☆22Updated 3 years ago
- scMEGA: Single-cell Multiomic Enhancer-based Gene regulAtory network inference☆40Updated 11 months ago
- analysis script for GBM single cell RNA seq data☆21Updated 4 years ago
- STRIDE (Spatial TRanscRIptomics DEconvolution by topic modelling) is a cell-type deconvolution tool for spatial transcriptomics by using …☆26Updated last year
- Code used to process the data of the HBCA project☆30Updated last year
- Code used to analyze single cell RNA and ATAC sequencing in developing human brain☆33Updated 3 years ago
- ☆13Updated 9 months ago
- Framework for Unified Single-Cell Analysis (FUSCA) is a software package for single-cell data analysis developed in R. At the moment, it …☆21Updated 2 years ago
- R package IReNA☆28Updated 9 months ago
- We describe a transcriptional reference map of human natural killer (NK) cells based on analysis of scRNA-seq data from both blood and ti…☆11Updated 10 months ago
- ☆21Updated 2 years ago
- R package for generalized binary covariance decomposition.☆10Updated last month
- Mosaic single cell data integration using non-overlapping features☆37Updated 2 years ago
- ☆50Updated 5 years ago
- Image processing pipeline for spatial projects☆15Updated 2 years ago
- ☆37Updated 2 years ago
- Single-Cell Analysis of Inter-Individual Variability by Interpretable Tensor Decomposition☆61Updated last year