AmandaKedaigle / OrganoidAtlas
Code to go along with https://doi.org/10.1016/j.cell.2022.09.010
☆20Updated 2 years ago
Related projects ⓘ
Alternatives and complementary repositories for OrganoidAtlas
- Reproducibility code for the manuscript: 'Inferring and perturbing cell fate regulomes in human cerebral organoids☆25Updated last year
- Repository for the building, sharing and editing of scRNAseq pipelines for the Lung Cell Atlas☆31Updated 3 years ago
- analysis script for GBM single cell RNA seq data☆17Updated 3 years ago
- sEV-containing droplet identification in scRNA-seq data (SEVtras)☆20Updated 2 weeks ago
- Calculation of Reference/Cluster Similarity Spectrum (RSS/CSS)☆30Updated 8 months ago
- Bi-order integration (in silico multi-omics data) of single cell RNA sequencing, single cell ATAC sequencing, spacial transcriptomics and…☆34Updated last year
- Trajectory inference across multiple conditions with condiments: differential topology, progression, differentiation, and expression☆25Updated last month
- Functions for single cell data analysis☆27Updated 3 years ago
- Aligning gene expression trajectories of single-cell reference and query systems☆46Updated last month
- Code used to run the data analysis in the hdWGCNA manuscript (Morabito et al 2022)☆13Updated last year
- Scripts and notebooks to reproduce all analysis from Massoni-Badosa et al. (2022)☆25Updated last month
- ☆17Updated 2 years ago
- A manually curated database of literature-supported ligand-receptor interactions in human and mouse☆26Updated 4 months ago
- Spatial transcriptomics of heart tissue☆17Updated 2 years ago
- Accurate and fast cell marker gene identification with COSG☆38Updated last year
- Unsupervised Inference of Developmental Directions for Single Cells☆21Updated 10 months ago
- This repository contains scripts to identify healthy and malignant cells from scRNAseq with CloneTracer and process data from Optimized 1…☆24Updated last month
- ☆39Updated 3 years ago
- Mosaic single cell data integration using non-overlapping features☆34Updated 2 years ago
- Inferring CNV data from single cell ATAC seq☆22Updated 9 months ago
- Mitochondrial Alteration Enrichment and Genome Analysis Toolkit☆17Updated 10 months ago
- ☆12Updated last year
- scMEGA: Single-cell Multiomic Enhancer-based Gene regulAtory network inference☆37Updated 2 months ago
- Lung cancer 10X analysis☆11Updated 3 years ago
- Framework for Unified Single-Cell Analysis (FUSCA) is a software package for single-cell data analysis developed in R. At the moment, it …☆17Updated last year
- Gene group activity utility functions for Scanpy☆56Updated 3 months ago
- Single-cell RNA-seq data-based inference of multilayer inter- and intra-cellular signaling networks☆25Updated 3 years ago
- Scalable sequence-informed embedding of single-cell ATAC-seq data with CellSpace☆34Updated 8 months ago
- Identifying external communication signals using single-cell transcriptomics data☆18Updated 5 months ago
- Analysis cell-type-specific functional gene network, with SCINET and HumanNetv3☆38Updated 8 months ago