AmandaKedaigle / OrganoidAtlas
Code to go along with https://doi.org/10.1016/j.cell.2022.09.010
☆20Updated 3 years ago
Alternatives and similar repositories for OrganoidAtlas:
Users that are interested in OrganoidAtlas are comparing it to the libraries listed below
- Reproducibility code for the manuscript: 'Inferring and perturbing cell fate regulomes in human cerebral organoids☆27Updated last year
- Trajectory inference across multiple conditions with condiments: differential topology, progression, differentiation, and expression☆27Updated 4 months ago
- analysis scripts related to Jin et al manuscript on scRNA seq in aging mouse brain☆16Updated 9 months ago
- Single-cell RNA-seq data-based inference of multilayer inter- and intra-cellular signaling networks☆26Updated 3 years ago
- FastIntegrate integrates thousands of scRNA-seq datasets and outputs batch-corrected values for downstream analysis☆23Updated 5 months ago
- Repository for the building, sharing and editing of scRNAseq pipelines for the Lung Cell Atlas☆35Updated 4 years ago
- Functions for single cell data analysis☆31Updated 3 years ago
- A manually curated database of literature-supported ligand-receptor interactions in human and mouse☆30Updated 9 months ago
- The scripts used for analyzing JAX mouse dataset☆24Updated 5 months ago
- Calculation of Reference/Cluster Similarity Spectrum (RSS/CSS)☆31Updated last year
- ☆13Updated last year
- Collection of scripts for analysis of pan fetal immune atlas☆26Updated 2 years ago
- Analysis of imbalanced data and its impacts in a scRNA-seq integration setting☆30Updated last month
- Lung cancer 10X analysis☆11Updated 4 years ago
- iterative clustering pipeline of big single cell datasets.☆29Updated 2 months ago
- This repository contains scripts to identify healthy and malignant cells from scRNAseq with CloneTracer and process data from Optimized 1…☆25Updated 5 months ago
- Unsupervised Inference of Developmental Directions for Single Cells☆21Updated last year
- analyses of scRNAseq and spatial transcriptomics dataset of developing human pancreas at multiple gestational stages☆10Updated 2 years ago
- Mosaic single cell data integration using non-overlapping features☆37Updated 2 years ago
- analysis script for GBM single cell RNA seq data☆17Updated 3 years ago
- ☆55Updated last year
- Analysis cell-type-specific functional gene network, with SCINET and HumanNetv3☆41Updated last year
- Code for single-cell eQTL analysis of memory T cell data in Nathan, et al. bioRxiv (2021)☆19Updated last year
- ☆33Updated 11 months ago
- Framework for Unified Single-Cell Analysis (FUSCA) is a software package for single-cell data analysis developed in R. At the moment, it …☆19Updated 2 years ago
- ☆18Updated 2 years ago
- ☆24Updated last month
- sEV-containing droplet identification in scRNA-seq data (SEVtras)☆25Updated last month
- Spatial transcriptomics of heart tissue☆20Updated 2 years ago
- STRIDE (Spatial TRanscRIptomics DEconvolution by topic modelling) is a cell-type deconvolution tool for spatial transcriptomics by using …☆27Updated last year