EperLuo / scDiffusionLinks
A model developed for the generation of scRNA-seq data
☆84Updated 2 weeks ago
Alternatives and similar repositories for scDiffusion
Users that are interested in scDiffusion are comparing it to the libraries listed below
Sorting:
- Repository for Nicheformer: a foundation model for single-cell and spatial omics☆149Updated 2 months ago
- Official repo for CellPLM: Pre-training of Cell Language Model Beyond Single Cells.☆101Updated last year
- Modeling complex perturbations with CellFlow☆114Updated last week
- ☆69Updated 6 months ago
- Evaluation suite for transcriptomic perturbation effect prediction models. Includes support for single-cell foundation models.☆35Updated 6 months ago
- Single-Cell (Perturbation) Model Library☆89Updated 2 weeks ago
- PerturbNet is a deep generative model that can predict the distribution of cell states induced by chemical or genetic perturbation☆61Updated 3 weeks ago
- ☆114Updated this week
- Comprehensive suite for evaluating perturbation prediction models☆120Updated 2 weeks ago
- Code for evaluating single cell foundation models scBERT and scGPT☆46Updated last year
- ☆92Updated 5 months ago
- Single-cell perturbation effects prediction benchmark☆58Updated 3 weeks ago
- ☆79Updated 3 weeks ago
- The Compositional Perturbation Autoencoder (CPA) is a deep generative framework to learn effects of perturbations at the single-cell leve…☆134Updated last year
- Repository for paper scMulan: a multitask generative pre-trained language model for single-cell analysis.☆61Updated last year
- Learning Single-Cell Perturbation Responses using Neural Optimal Transport☆156Updated last year
- scPerturb: A resource and a python/R tool for single-cell perturbation data☆164Updated 11 months ago
- UCE is a zero-shot foundation model for single-cell gene expression data☆238Updated 11 months ago
- ☆25Updated 5 months ago
- Code for "Predicting Cellular Responses to Novel Drug Perturbations at a Single-Cell Resolution", NeurIPS 2022.☆142Updated 11 months ago
- ☆90Updated last year
- A unified approach for integrating spatial and single-cell transcriptomics data by leveraging deep generative models☆77Updated last year
- scDiff: A General Single-Cell Analysis Framework via Conditional Diffusion Generative Models☆32Updated last year
- PRnet is a flexible and scalable perturbation-conditioned generative model predicting transcriptional responses to unseen complex perturb…☆74Updated last year
- [Cell Patterns] Codes for paper: scELMo: Embeddings from Language Models are Good Learners for Single-cell Data Analysis☆19Updated 3 months ago
- Transformer for One-Stop Interpretable Cell-type Annotation☆146Updated last year
- ☆126Updated 11 months ago
- Models and datasets for perturbational single-cell omics☆172Updated 3 years ago
- a unified single-cell data integration framework by optimal transport☆35Updated last year
- [NeurIPS 2024 Spotlight] A cell-ontology guided transcriptome foundation model☆21Updated 10 months ago