Alternatives and similar repositories for scDiffusion

Users that are interested in scDiffusion are comparing it to the libraries listed below

• theislab / nicheformer
  Repository for Nicheformer: a foundation model for single-cell and spatial omics
  ☆95Updated 5 months ago
• theislab / CellFlow
  Modeling complex perturbations with CellFlow
  ☆82Updated this week
• OmicsML / CellPLM
  Official repo for CellPLM: Pre-training of Cell Language Model Beyond Single Cells.
  ☆92Updated last year
• aaronwtr / PertEval
  Evaluation suite for transcriptomic perturbation effect prediction models. Includes support for single-cell foundation models.
  ☆27Updated 3 weeks ago
• welch-lab / PerturbNet
  PerturbNet is a deep generative model that can predict the distribution of cell states induced by chemical or genetic perturbation
  ☆44Updated last month
• theislab / cpa
  The Compositional Perturbation Autoencoder (CPA) is a deep generative framework to learn effects of perturbations at the single-cell leve…
  ☆109Updated last year
• HelloWorldLTY / scEval
  Codes for paper: Evaluating the Utilities of Large Language Models in Single-cell Data Analysis.
  ☆72Updated 2 months ago
• sanderlab / scPerturb
  scPerturb: A resource and a python/R tool for single-cell perturbation data
  ☆138Updated 6 months ago
• theislab / CFGen
  ☆22Updated 2 months ago
• clinicalml / sc-foundation-eval
  Code for evaluating single cell foundation models scBERT and scGPT
  ☆46Updated last year
• YangLabHKUST / SpatialScope
  A unified approach for integrating spatial and single-cell transcriptomics data by leveraging deep generative models
  ☆69Updated last year
• microsoft / zero-shot-scfoundation
  ☆72Updated last year
• yhr91 / GEARS_misc
  ☆20Updated 10 months ago
• bunnech / cellot
  Learning Single-Cell Perturbation Responses using Neural Optimal Transport
  ☆143Updated 9 months ago
• xianglin226 / Benchmarking-Single-Cell-Perturbation
  Single-Cell (Perturbation) Model Library
  ☆67Updated 3 weeks ago
• theislab / chemCPA
  Code for "Predicting Cellular Responses to Novel Drug Perturbations at a Single-Cell Resolution", NeurIPS 2022.
  ☆122Updated 6 months ago
• jkobject / geneformer
  ☆75Updated last week
• OmicsML / scDiff
  scDiff: A General Single-Cell Analysis Framework via Conditional Diffusion Generative Models
  ☆29Updated last year
• SuperBianC / scMulan
  Repository for paper scMulan: a multitask generative pre-trained language model for single-cell analysis.
  ☆61Updated last year
• snap-stanford / UCE
  UCE is a zero-shot foundation model for single-cell gene expression data
  ☆217Updated 5 months ago
• const-ae / linear_perturbation_prediction-Paper
  ☆47Updated last month
• snap-stanford / SATURN
  ☆135Updated last year
• yulun-rayn / graphVCI
  Predicting Cellular Responses with Variational Causal Inference and Refined Relational Information (ICLR 2023)
  ☆19Updated 2 months ago
• JackieHanLab / TOSICA
  Transformer for One-Stop Interpretable Cell-type Annotation
  ☆144Updated last year
• ArcInstitute / cell-eval
  Comprehensive suite for evaluating perturbation prediction models
  ☆71Updated this week
• theislab / prophet
  ☆36Updated 3 months ago
• Perturbation-Response-Prediction / PRnet
  PRnet is a flexible and scalable perturbation-conditioned generative model predicting transcriptional responses to unseen complex perturb…
  ☆55Updated 8 months ago
• cantinilab / scPRINT
  single cell foundation model
  ☆97Updated this week
• theislab / sc-pert
  Models and datasets for perturbational single-cell omics
  ☆161Updated 3 years ago
• bowang-lab / scGPT-spatial
  ☆108Updated 6 months ago