A model developed for the generation of scRNA-seq data
☆87Jan 21, 2026Updated 2 months ago
Alternatives and similar repositories for scDiffusion
Users that are interested in scDiffusion are comparing it to the libraries listed below
Sorting:
- ☆12Jun 16, 2025Updated 9 months ago
- Diffusion Model for Single-Cell Multiome Data Generation and Analysis☆30Feb 5, 2026Updated last month
- ☆26Aug 29, 2025Updated 6 months ago
- A unifying representation of single cell expression profiles that quantifies similarity between expression states and generalizes to repr…☆236Updated this week
- Evaluation suite for transcriptomic perturbation effect prediction models. Includes support for single-cell foundation models.☆36Jul 29, 2025Updated 7 months ago
- ☆395Nov 23, 2025Updated 3 months ago
- Repository for paper scMulan: a multitask generative pre-trained language model for single-cell analysis.☆62May 30, 2024Updated last year
- ☆23Jan 10, 2025Updated last year
- scDiff: A General Single-Cell Analysis Framework via Conditional Diffusion Generative Models☆32Aug 13, 2024Updated last year
- Inpainting protein sequence and structure☆12Nov 10, 2023Updated 2 years ago
- Single-cell perturbation effects prediction benchmark☆72Jan 6, 2026Updated 2 months ago
- Single-Cell Multimodal Prediction via Transformer☆28Feb 7, 2024Updated 2 years ago
- [Cell Patterns] Codes for paper: scELMo: Embeddings from Language Models are Good Learners for Single-cell Data Analysis☆20Jan 31, 2026Updated last month
- ☆314Mar 18, 2024Updated 2 years ago
- ☆17May 23, 2025Updated 9 months ago
- Repository for Nicheformer: a foundation model for single-cell and spatial omics☆157Nov 23, 2025Updated 3 months ago
- ☆15Dec 18, 2024Updated last year
- ☆140Jan 30, 2026Updated last month
- ☆20Apr 7, 2025Updated 11 months ago
- ☆48Jun 16, 2025Updated 9 months ago
- ☆19May 25, 2024Updated last year
- ☆350Dec 13, 2023Updated 2 years ago
- CellDrift: temporal perturbation effects for single cell data☆13Dec 3, 2022Updated 3 years ago
- ☆338May 23, 2025Updated 9 months ago
- ☆413Jan 21, 2026Updated 2 months ago
- ☆60Apr 5, 2024Updated last year
- GEARS is a geometric deep learning model that predicts outcomes of novel multi-gene perturbations☆344Feb 1, 2025Updated last year
- The source code and results for different methods on annotating external testing datsets of human and mouse.☆12Apr 21, 2021Updated 4 years ago
- Reproducing the experiments of the DestVI paper☆22Feb 9, 2022Updated 4 years ago
- ☆19May 5, 2024Updated last year
- Benchmarking gene embeddings on single, paired, and gene set tasks☆19Nov 29, 2025Updated 3 months ago
- Diffusion model for gene regulatory network inference.☆28Updated this week
- Comprehensive suite for evaluating perturbation prediction models☆123Feb 26, 2026Updated 3 weeks ago
- Modeling complex perturbations with CellFlow☆124Updated this week
- ☆18Jul 10, 2025Updated 8 months ago
- A novel method named stDiff investigates the potential of employing diffusion models for single-cell omics generation.☆26Mar 13, 2024Updated 2 years ago
- GraphCompass: Graph Comparison Tools for Differential Analyses in Spatial Systems☆38Jul 11, 2025Updated 8 months ago
- Repository for Fast Non-autoregressive Inverse Folding with Discrete Diffusion☆18Feb 8, 2024Updated 2 years ago
- Meta-analysis of drug target evidence in single-cell data☆16Oct 22, 2024Updated last year