aertslab / scenicplus_analysesLinks
SCENIC+ analyses
☆15Updated last year
Alternatives and similar repositories for scenicplus_analyses
Users that are interested in scenicplus_analyses are comparing it to the libraries listed below
Sorting:
- Functional Inference of Gene Regulation☆46Updated last year
- Python package for analysis of multiomic single cell RNA-seq and ATAC-seq.☆64Updated last month
- All code associated with manuscript detailing scATAC and scRNA-seq following stimulus of PBMCs☆41Updated 2 years ago
- ☆39Updated 4 years ago
- Scalable sequence-informed embedding of single-cell ATAC-seq data with CellSpace☆41Updated 7 months ago
- R package IReNA☆28Updated 9 months ago
- ☆32Updated 7 months ago
- ☆54Updated 10 months ago
- Gene group activity utility functions for Scanpy☆84Updated 8 months ago
- ☆57Updated 2 months ago
- Framework for Unified Single-Cell Analysis (FUSCA) is a software package for single-cell data analysis developed in R. At the moment, it …☆21Updated 2 years ago
- ☆37Updated 2 months ago
- ScoMAP is an R package to spatially integrate single-cell omics data into virtual cells and infer enhancer-to-gene relationships.☆27Updated 3 years ago
- This repository contains our CellTag workflow, as deployed in our 2018 Biddy et al., Nature paper.☆32Updated last year
- ☆29Updated 10 months ago
- pycisTopic is a Python module to simultaneously identify cell states and cis-regulatory topics from single cell epigenomics data.☆74Updated last month
- Using TCR and expression for sequence embedding☆58Updated 2 weeks ago
- scWGCNA☆61Updated 2 years ago
- Cell age determination by scATAC-seq and bulk-ATAC-seq☆32Updated last year
- PhyloVelo, Phylogeny-based transcriptomic velocity of single cells☆43Updated last year
- SCRIP(Single Cell Regulatory network Inference using ChIP-seq) is a tool for evaluating the binding enrichment of specific TR at single-c…☆20Updated last year
- cell type deconvolution for multi-condition bulk RNA-seq data☆27Updated 3 years ago
- Code associated with the data analysis for Miyoshi & Morabito 2024☆23Updated last month
- ☆80Updated last week
- Repository for the building, sharing and editing of scRNAseq pipelines for the Lung Cell Atlas☆38Updated 4 years ago
- ☆69Updated last year
- ☆17Updated last year
- R implementation of GeneTrajectory☆63Updated last year
- Single cell omics biology annotations☆51Updated 4 months ago
- ☆45Updated last year