aertslab / scenicplus_analysesLinks
SCENIC+ analyses
☆18Updated 2 years ago
Alternatives and similar repositories for scenicplus_analyses
Users that are interested in scenicplus_analyses are comparing it to the libraries listed below
Sorting:
- ☆33Updated 11 months ago
- Python package for analysis of multiomic single cell RNA-seq and ATAC-seq.☆67Updated 6 months ago
- Functional Inference of Gene Regulation☆49Updated last year
- All code associated with manuscript detailing scATAC and scRNA-seq following stimulus of PBMCs☆41Updated 2 years ago
- Single-Cell ENhancer Target gene mapping using multimodal data with ATAC + RNA☆82Updated 8 months ago
- Removing empty droplets in multiome datasets☆17Updated last year
- Scalable sequence-informed embedding of single-cell ATAC-seq data with CellSpace☆41Updated last year
- scWGCNA☆61Updated 3 years ago
- Pipeline to run scE2G☆32Updated 2 months ago
- Gene group activity utility functions for Scanpy☆99Updated last year
- This repository contains our CellTag workflow, as deployed in our 2018 Biddy et al., Nature paper.☆32Updated last year
- An R package for ECM molecule annotation, classification, and analysis☆14Updated last year
- The scripts used for the analyses in TOME project☆25Updated last month
- Single Cell Transcriptomics of 25 Human Organs to Create a Tabula Sapiens☆44Updated last month
- AD regulome analysis☆14Updated 2 years ago
- pycisTopic is a Python module to simultaneously identify cell states and cis-regulatory topics from single cell epigenomics data.☆79Updated last month
- Whole mouse brain snATAC seq analysis☆28Updated 9 months ago
- Tutorial of single-cell RNA-ATAC multiomic sequencing data analysis☆68Updated last year
- ☆56Updated last year
- ScoMAP is an R package to spatially integrate single-cell omics data into virtual cells and infer enhancer-to-gene relationships.☆28Updated 4 years ago
- Cell age determination by scATAC-seq and bulk-ATAC-seq☆32Updated last year
- ☆39Updated 4 years ago
- Framework for Unified Single-Cell Analysis (FUSCA) is a software package for single-cell data analysis developed in R. At the moment, it …☆21Updated 2 years ago
- Using TCR and expression for sequence embedding☆62Updated last week
- ☆34Updated 2 years ago
- Repository for the building, sharing and editing of scRNAseq pipelines for the Lung Cell Atlas☆39Updated 5 years ago
- Pan-Cancer Single Cell Classifier☆83Updated last year
- Python package with CLI for the analysis of single cell methylation data.☆18Updated last year
- This repository contains scripts to identify healthy and malignant cells from scRNAseq with CloneTracer and process data from Optimized 1…☆26Updated last year
- ☆18Updated last year