Alternatives and similar repositories for DIISCO_public:

Users that are interested in DIISCO_public are comparing it to the libraries listed below

• Teichlab / Genes2Genes
  Aligning gene expression trajectories of single-cell reference and query systems
  ☆54Updated 3 months ago
• bioinfo-biols / SEVtras
  sEV-containing droplet identification in scRNA-seq data (SEVtras)
  ☆22Updated 2 weeks ago
• Teichlab / PanGIAtlas
  Integration of gut cell atlases
  ☆17Updated 2 months ago
• SunXQlab / scMLnet
  Single-cell RNA-seq data-based inference of multilayer inter- and intra-cellular signaling networks
  ☆26Updated 3 years ago
• lifei176 / Single-cell-atlas-of-sex-differences-and-androgen-effects
  ☆16Updated 10 months ago
• Teichlab / HCA_Heart_ver2
  ☆27Updated last year
• jumphone / Vector
  Unsupervised Inference of Developmental Directions for Single Cells
  ☆21Updated last year
• YiLab-SC / scHolography
  ☆10Updated 8 months ago
• phillipnicol / scDist
  Robust identification of perturbed cell types in single-cell RNA-seq data
  ☆29Updated 2 months ago
• CamaraLab / ConDecon
  R package: ConDecon is a clustering-independent deconvolution method for estimating cell abundances in bulk tissues using single-cell RNA…
  ☆12Updated 3 months ago
• Chuxj / CRC-atlas
  ☆24Updated 7 months ago
• yanailab / PanCancer
  Data available at: https://www.dropbox.com/sh/jh4s57kgbb0rnxe/AABoMK466cGc1OKsOuFN10wca?dl=0 and https://nyulangone-my.sharepoint.com//g/…
  ☆28Updated 2 years ago
• guangchunhan / LUAD_Code
  ☆13Updated last year
• KramannLab / visium_heart
  Spatial transcriptomics of heart tissue
  ☆19Updated 2 years ago
• cbib / Seurat-Integrate
  R package gathering a set of wrappers to apply various integration methods to Seurat objects (and rate such methods)
  ☆14Updated 2 weeks ago
• Teichlab / SKM_ageing_atlas
  ☆12Updated 9 months ago
• Fraternalilab / sciCSR
  Single-Cell Inference of Class Switch Recombination
  ☆18Updated 5 months ago
• yunguan-wang / Spacia
  ☆25Updated 2 months ago
• LungCellAtlas / scRNAseq_pipelines
  Repository for the building, sharing and editing of scRNAseq pipelines for the Lung Cell Atlas
  ☆31Updated 4 years ago
• christophhmayr / 2023_Mayr
  Code for the spatial transcriptomic paper on IPF lungs
  ☆13Updated 6 months ago
• marcalva / hcc_sc_2022
  HCC single cell analysis for Alvarez, Benhammou et al.
  ☆16Updated 2 years ago
• wanglabtongji / STRIDE
  STRIDE (Spatial TRanscRIptomics DEconvolution by topic modelling) is a cell-type deconvolution tool for spatial transcriptomics by using …
  ☆22Updated last year
• ChanghanGitHub / exFINDER
  Identifying external communication signals using single-cell transcriptomics data
  ☆19Updated 7 months ago
• LuChenLab / inferCC
  Lung cancer 10X analysis
  ☆11Updated 4 years ago
• dpeerlab / pdac-progression
  ☆10Updated last year
• mbourgey / scRNA_GBM
  analysis script for GBM single cell RNA seq data
  ☆17Updated 3 years ago
• ThomasJamesMitchell / deSCeRNAMut
  Method for de novo mutation calling from droplet based single cell RNA seq data
  ☆12Updated 3 years ago
• SaskiaFreytag / spatial_brain_cancer
  ☆13Updated last year
• Olaniru / human-fetal-pancreas
  analyses of scRNAseq and spatial transcriptomics dataset of developing human pancreas at multiple gestational stages
  ☆9Updated 2 years ago
• JunyueCaoLab / EasySci
  Computational pipeline to process EasySci-RNA data.
  ☆18Updated last year