Alternatives and similar repositories for CellFlow

Users that are interested in CellFlow are comparing it to the libraries listed below

• theislab / prophet
  ☆31Updated last week
• theislab / scTab
  ☆58Updated 8 months ago
• StatBiomed / SpatialDM
  Spatial direct messaging detected by bivariate Moran
  ☆26Updated 2 weeks ago
• jkobject / scPRINT
  single cell foundation model for Gene network inference and more
  ☆16Updated 7 months ago
• theislab / multimil
  Multimodal weakly supervised learning to identify disease-specific changes in single-cell atlases
  ☆32Updated last month
• Genentech / decima
  Decima is a Python library to train sequence models on single-cell RNA-seq data.
  ☆36Updated 2 weeks ago
• aaronwtr / PertEval
  Evaluation suite for transcriptomic perturbation effect prediction models. Includes support for single-cell foundation models.
  ☆25Updated last month
• YosefLab / scib-metrics
  Accelerated, Python-only, single-cell integration benchmarking metrics
  ☆58Updated last week
• const-ae / linear_perturbation_prediction-Paper
  ☆21Updated last week
• Lotfollahi-lab / nichecompass
  End-to-end analysis of spatial multi-omics data
  ☆71Updated last month
• altoslabs / perturbench
  ☆25Updated 4 months ago
• dpeerlab / ENVI
  ☆48Updated last month
• theislab / DRVI
  Unsupervised Deep Disentangled Representation of Single-Cell Omics
  ☆42Updated this week
• nitzanlab / biolord
  ☆78Updated 9 months ago
• jiang-q19 / scPRAM
  scPRAM accurately predicts single-cell gene expression perturbation response based on attention mechanism
  ☆14Updated 7 months ago
• theislab / graphcompass
  GraphCompass: Graph Comparison Tools for Differential Analyses in Spatial Systems
  ☆35Updated last month
• Genentech / pascient
  ☆15Updated 2 weeks ago
• theislab / multicpa
  ☆14Updated 2 years ago
• MICS-Lab / novae
  Graph-based foundation model for spatial transcriptomics data. Zero-shot spatial domain inference, batch-effect correction, and many othe…
  ☆43Updated 2 weeks ago
• MarioniLab / sagenet
  Spatial reconstruction of dissociated single-cell data
  ☆17Updated last year
• cantinilab / scPRINT
  single cell foundation model for Gene network inference and more
  ☆77Updated this week
• ZhangLabGT / scMultiSim
  A simulator for single cell multi-omics and spatial omics data that provides ground truth to benchmark a wide range of methods.
  ☆40Updated 4 months ago
• huidongchen / simba
  SIMBA: SIngle-cell eMBedding Along with features
  ☆19Updated last year
• prabhakarlab / Banksy_py
  ☆48Updated 5 months ago
• scverse / scvi-tools-skeleton
  Template repository for creating novel models with scvi-tools
  ☆20Updated 2 years ago
• gifford-lab / prescient
  Codebase for PRESCIENT (Potential eneRgy undErlying Single Cell gradIENTs) for generative modeling of single-cell time-series.
  ☆47Updated 3 months ago
• jkobject / scDataLoader
  a dataloader to work with large single cell datasets from lamindb
  ☆24Updated this week
• lilab-bcb / harmony-pytorch
  ☆53Updated last month
• ma-compbio / SpiceMix
  spatial transcriptome, single cell
  ☆68Updated 2 years ago
• yutongo / TIGON
  ☆40Updated last month