Alternatives and similar repositories for CellFlow

Users that are interested in CellFlow are comparing it to the libraries listed below

• EperLuo / scDiffusion
  A model developed for the generation of scRNA-seq data
  ☆81Updated 10 months ago
• theislab / nicheformer
  Repository for Nicheformer: a foundation model for single-cell and spatial omics
  ☆135Updated last month
• nitzanlab / biolord
  ☆89Updated last year
• welch-lab / PerturbNet
  PerturbNet is a deep generative model that can predict the distribution of cell states induced by chemical or genetic perturbation
  ☆58Updated 5 months ago
• ArcInstitute / cell-eval
  Comprehensive suite for evaluating perturbation prediction models
  ☆113Updated last week
• const-ae / linear_perturbation_prediction-Paper
  ☆66Updated 5 months ago
• aaronwtr / PertEval
  Evaluation suite for transcriptomic perturbation effect prediction models. Includes support for single-cell foundation models.
  ☆31Updated 4 months ago
• theislab / cpa
  The Compositional Perturbation Autoencoder (CPA) is a deep generative framework to learn effects of perturbations at the single-cell leve…
  ☆124Updated last year
• theislab / sc-pert
  Models and datasets for perturbational single-cell omics
  ☆170Updated 3 years ago
• bunnech / cellot
  Learning Single-Cell Perturbation Responses using Neural Optimal Transport
  ☆152Updated last year
• sanderlab / scPerturb
  scPerturb: A resource and a python/R tool for single-cell perturbation data
  ☆156Updated 10 months ago
• theislab / prophet
  ☆38Updated last week
• siyuh / Squidiff
  ☆94Updated last month
• xianglin226 / Benchmarking-Single-Cell-Perturbation
  Single-Cell (Perturbation) Model Library
  ☆86Updated 2 weeks ago
• YangLabHKUST / SpatialScope
  A unified approach for integrating spatial and single-cell transcriptomics data by leveraging deep generative models
  ☆74Updated last year
• theislab / chemCPA
  Code for "Predicting Cellular Responses to Novel Drug Perturbations at a Single-Cell Resolution", NeurIPS 2022.
  ☆134Updated 10 months ago
• clinicalml / sc-foundation-eval
  Code for evaluating single cell foundation models scBERT and scGPT
  ☆46Updated last year
• HantaoShu / DeepSEM
  ☆87Updated 2 years ago
• Genentech / sVAE
  ☆63Updated 2 years ago
• theislab / CFGen
  ☆23Updated 3 months ago
• cantinilab / scPRINT
  🏃 The go-to single-cell Foundation Model
  ☆126Updated last week
• ZhangLabGT / scMultiSim
  A simulator for single cell multi-omics and spatial omics data that provides ground truth to benchmark a wide range of methods.
  ☆66Updated last month
• carpenter-singh-lab / 2022_Haghighi_NatureMethods
  High-Dimensional Gene Expression and Morphology Profiles of Cells across 28,000 Genetic and Chemical Perturbations
  ☆51Updated 4 months ago
• OmicsML / scDiff
  scDiff: A General Single-Cell Analysis Framework via Conditional Diffusion Generative Models
  ☆32Updated last year
• snap-stanford / SATURN
  ☆149Updated last year
• OmicsML / CellPLM
  Official repo for CellPLM: Pre-training of Cell Language Model Beyond Single Cells.
  ☆101Updated last year
• jkobject / geneformer
  ☆88Updated 4 months ago
• altoslabs / perturbench
  ☆69Updated 2 months ago
• bm2-lab / scPerturBench
  Single-cell perturbation effects prediction benchmark
  ☆42Updated 5 months ago
• TuftsBCB / RegDiffusion
  Diffusion model for gene regulatory network inference.
  ☆24Updated 5 months ago