Modeling complex perturbations with CellFlow
☆165Oct 26, 2026Updated this week
Alternatives and similar repositories for CellFlow
Users that are interested in CellFlow are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Modeling complex perturbations with CellFlow☆11Jul 17, 2026Updated 3 months ago
- [ICLR 2026] scDFM: Distributional Flow Matching for Robust Single-Cell Perturbation Prediction☆66Sep 28, 2026Updated last month
- State is a machine learning model that predicts cellular perturbation response across diverse contexts☆738Jul 24, 2026Updated 3 months ago
- Comprehensive suite for evaluating perturbation prediction models☆165Jul 27, 2026Updated 3 months ago
- pytorch dataloaders for single-cell perturbation data☆56Jul 18, 2026Updated 3 months ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Single-cell perturbation effects prediction benchmark☆107Oct 22, 2026Updated last week
- Single-Cell (Perturbation) Model Library☆130Jul 27, 2026Updated 3 months ago
- ☆191Jan 30, 2026Updated 9 months ago
- Single-cell perturbation analysis☆355Updated this week
- inferring regulatory cellular dynamics☆199Oct 21, 2026Updated last week
- GEARS is a geometric deep learning model that predicts outcomes of novel multi-gene perturbations☆420Feb 1, 2025Updated last year
- Single-cell differential expression☆21Oct 18, 2026Updated last week
- ☆18Jan 30, 2026Updated 8 months ago
- Stack is a single-cell foundation model that enables in-context learning at inference time.☆169Apr 28, 2026Updated 6 months ago
- Deploy open-source AI quickly and easily - Special Bonus Offer • AdRunpod Hub is built for open source. One-click deployment and autoscaling endpoints without provisioning your own infrastructure.
- ☆75Jan 14, 2026Updated 9 months ago
- Arc Virtual Cell Atlas☆646Updated this week
- Multi-omic single-cell optimal transport tools☆217Oct 19, 2026Updated last week
- ☆65Aug 23, 2026Updated 2 months ago
- physics-informed neural network based method for solving single-cell population dynamics☆18Sep 19, 2026Updated last month
- Learning Single-Cell Perturbation Responses using Neural Optimal Transport☆182Oct 31, 2024Updated last year
- ☆595Updated this week
- PIE is a perturbation effect prediction model that generalizes to unseen biological conditions☆62Updated this week
- A model developed for the generation of scRNA-seq data☆96Jan 21, 2026Updated 9 months ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- ☆38Jul 27, 2026Updated 3 months ago
- VCWorld: A Biological World Model for Virtual Cell Simulation☆74May 29, 2026Updated 5 months ago
- Robust and scalable single-cell signature scoring☆29Updated this week
- ☆433Nov 23, 2025Updated 11 months ago
- k-NN-based mapping of cells across representations to transfer labels, embeddings, and expression values.☆17Oct 19, 2026Updated last week
- scPerturb: A resource and a python/R tool for single-cell perturbation data☆192Feb 25, 2025Updated last year
- Automatically annotate cell types, consistently across samples.☆30Updated this week
- pycisTopic is a Python module to simultaneously identify cell states and cis-regulatory topics from single cell epigenomics data.☆88Sep 15, 2026Updated last month
- ☆101Aug 10, 2026Updated 2 months ago
- Open source password manager - Proton Pass • AdSecurely store, share, and autofill your credentials with Proton Pass, the end-to-end encrypted password manager trusted by millions.
- Code and example of the D-SPIN framework☆45Updated this week
- PerturbNet is a deep generative model that can predict the distribution of cell states induced by chemical or genetic perturbation☆69Jan 12, 2026Updated 9 months ago
- A unifying representation of single cell expression profiles that quantifies similarity between expression states and generalizes to repr…☆267Mar 14, 2026Updated 7 months ago
- Official implementation of "CellFlux: Simulating Cellular Morphology Changes via Flow Matching" (ICML 2025)☆45Sep 3, 2025Updated last year
- Bayesian Sparse Additive Perturbation Regression, code and simulations☆19Apr 29, 2025Updated last year
- A repository for reproducing experiments from the TxPert paper☆55Mar 25, 2026Updated 7 months ago
- Evaluation suite for transcriptomic perturbation effect prediction models. Includes support for single-cell foundation models.☆41Jul 29, 2025Updated last year