Alternatives and similar repositories for CellFlow

Users that are interested in CellFlow are comparing it to the libraries listed below

• welch-lab / PerturbNet
  PerturbNet is a deep generative model that can predict the distribution of cell states induced by chemical or genetic perturbation
  ☆49Updated 3 months ago
• theislab / cpa
  The Compositional Perturbation Autoencoder (CPA) is a deep generative framework to learn effects of perturbations at the single-cell leve…
  ☆115Updated last year
• aaronwtr / PertEval
  Evaluation suite for transcriptomic perturbation effect prediction models. Includes support for single-cell foundation models.
  ☆27Updated 2 months ago
• EperLuo / scDiffusion
  A model developed for the generation of scRNA-seq data
  ☆73Updated 8 months ago
• theislab / nicheformer
  Repository for Nicheformer: a foundation model for single-cell and spatial omics
  ☆96Updated 7 months ago
• siyuh / Squidiff
  ☆14Updated 7 months ago
• sanderlab / scPerturb
  scPerturb: A resource and a python/R tool for single-cell perturbation data
  ☆151Updated 8 months ago
• theislab / sc-pert
  Models and datasets for perturbational single-cell omics
  ☆165Updated 3 years ago
• ArcInstitute / cell-eval
  Comprehensive suite for evaluating perturbation prediction models
  ☆94Updated last week
• theislab / chemCPA
  Code for "Predicting Cellular Responses to Novel Drug Perturbations at a Single-Cell Resolution", NeurIPS 2022.
  ☆127Updated 8 months ago
• bunnech / cellot
  Learning Single-Cell Perturbation Responses using Neural Optimal Transport
  ☆148Updated 11 months ago
• theislab / prophet
  ☆35Updated last month
• const-ae / linear_perturbation_prediction-Paper
  ☆56Updated 3 months ago
• xianglin226 / Benchmarking-Single-Cell-Perturbation
  Single-Cell (Perturbation) Model Library
  ☆75Updated last month
• nitzanlab / biolord
  ☆85Updated last year
• cantinilab / scPRINT
  🏃 The go-to single-cell Foundation Model
  ☆112Updated 2 weeks ago
• theislab / DRVI
  Unsupervised Deep Disentangled Representation of Single-Cell Omics
  ☆53Updated last week
• HantaoShu / DeepSEM
  ☆85Updated 2 years ago
• YangLabHKUST / SpatialScope
  A unified approach for integrating spatial and single-cell transcriptomics data by leveraging deep generative models
  ☆73Updated last year
• clinicalml / sc-foundation-eval
  Code for evaluating single cell foundation models scBERT and scGPT
  ☆46Updated last year
• TuftsBCB / RegDiffusion
  Diffusion model for gene regulatory network inference.
  ☆24Updated 3 months ago
• yhr91 / GEARS_misc
  ☆22Updated last year
• altoslabs / perturbench
  ☆43Updated last week
• Perturbation-Response-Prediction / PRnet
  PRnet is a flexible and scalable perturbation-conditioned generative model predicting transcriptional responses to unseen complex perturb…
  ☆62Updated 10 months ago
• mlbio-epfl / systema
  ☆38Updated 3 months ago
• czi-ai / transcriptformer
  ☆87Updated last month
• OmicsML / CellPLM
  Official repo for CellPLM: Pre-training of Cell Language Model Beyond Single Cells.
  ☆98Updated last year
• jkobject / geneformer
  ☆81Updated 2 months ago
• pinellolab / simba
  SIMBA: SIngle-cell eMBedding Along with features
  ☆63Updated last year
• snap-stanford / SATURN
  ☆141Updated last year