Modeling complex perturbations with CellFlow
☆137Apr 27, 2026Updated this week
Alternatives and similar repositories for CellFlow
Users that are interested in CellFlow are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Official implementation of "CellFlux: Simulating Cellular Morphology Changes via Flow Matching" (ICML 2025)☆36Sep 3, 2025Updated 7 months ago
- ☆15Dec 18, 2024Updated last year
- A repository for reproducing experiments from the TxPert paper☆26Mar 25, 2026Updated last month
- Nextflow pipeline to re-process all public single-cell RNA-seq data☆33Jul 9, 2025Updated 9 months ago
- Arc Virtual Cell Atlas☆513Feb 12, 2026Updated 2 months ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- A Deep Learning-Based Model for the integration, cross-dataset cross-modality generation, self augmentation and matched multi-omics simul…☆16Aug 9, 2025Updated 8 months ago
- GEARS is a geometric deep learning model that predicts outcomes of novel multi-gene perturbations☆356Feb 1, 2025Updated last year
- scPRAM accurately predicts single-cell gene expression perturbation response based on attention mechanism☆18Oct 17, 2024Updated last year
- [NeurIPS 2024 Spotlight] A cell-ontology guided transcriptome foundation model☆22Mar 12, 2025Updated last year
- Single-cell perturbation effects prediction benchmark☆82Apr 13, 2026Updated 2 weeks ago
- MorphoDiff is a diffusion based generative pipeline to predict high-resolution cell morphological responses under different conditions ba…☆33Mar 20, 2026Updated last month
- Comprehensive suite for evaluating perturbation prediction models☆126Mar 24, 2026Updated last month
- Single-cell perturbation analysis☆309Updated this week
- ☆28Aug 29, 2025Updated 8 months ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- 🏃 The go-to single-cell Foundation Model☆145Feb 20, 2026Updated 2 months ago
- ☆27Apr 1, 2025Updated last year
- Single-Cell (Perturbation) Model Library☆100Mar 30, 2026Updated last month
- State is a machine learning model that predicts cellular perturbation response across diverse contexts☆565Updated this week
- The code for "Learning Molecular Representation in a Cell"☆41Mar 6, 2025Updated last year
- ☆161Jan 30, 2026Updated 3 months ago
- Python API and Jupyter widget for Vitessce☆65Apr 17, 2026Updated last week
- ☆341May 23, 2025Updated 11 months ago
- ☆40Feb 24, 2026Updated 2 months ago
- Bare Metal GPUs on DigitalOcean Gradient AI • AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- scPerturb: A resource and a python/R tool for single-cell perturbation data☆173Feb 25, 2025Updated last year
- Public Codebase supporting the paper "Modeling Cellular Perturbations with The Sparse Additive Mechanism Shift Variational Autoencoder" b…☆14Oct 20, 2023Updated 2 years ago
- Deciphering driver regulators of cell fate decisions from single-cell RNA-seq data☆30Oct 24, 2024Updated last year
- ☆82Feb 17, 2026Updated 2 months ago
- ☆406Nov 23, 2025Updated 5 months ago
- Learning Single-Cell Perturbation Responses using Neural Optimal Transport☆171Oct 31, 2024Updated last year
- Perturbation-response Score (PS) analysis is a method to quantify diverse perturbation responses and discover novel biological insights i…☆17Apr 20, 2024Updated 2 years ago
- ☆67Jul 21, 2023Updated 2 years ago
- ☆35Feb 24, 2026Updated 2 months ago
- Simple, predictable pricing with DigitalOcean hosting • AdAlways know what you'll pay with monthly caps and flat pricing. Enterprise-grade infrastructure trusted by 600k+ customers.
- Diffusion Model for Single-Cell Multiome Data Generation and Analysis☆33Feb 5, 2026Updated 2 months ago
- Distributed single-cell data analysis.☆39Apr 15, 2026Updated 2 weeks ago
- Multi-omic single-cell optimal transport tools☆205Apr 20, 2026Updated last week
- A model developed for the generation of scRNA-seq data☆89Jan 21, 2026Updated 3 months ago
- ☆28Apr 15, 2026Updated 2 weeks ago
- ☆434Jan 21, 2026Updated 3 months ago
- code for paper: Identifiability Guarantees for Causal Disentanglement from Soft Interventions☆15Nov 27, 2023Updated 2 years ago